Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d054042_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:4:245465326:245468059:-1 gene:Zm00001d054042 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable metal-nicotianamine transporter YSL7
Sequence

ATGGACGACGGGCAGCATACGCAGGAAGGCGTGTCGACGGAGCGCGCGTTCGAGGCAGAC
CCGATCCCATCCTTGTCGGAGACGATCACGGCACGGGCGATAGCGGCCAGCTTCATCCTG
GGCGTCGCCCTCTGCGCCGTCGCCATGAAGATCAGCCTCAACTCGGGCTTCCTCCCGTCG
CTCACCGTCCCGGCTGGCCTCGTCGGCTTCTACCTCGTCCGGGCGTGGATCCGTGCCCTC
GACTGCTGCTTCCAGGTGCCACACCAGCTGCCATTCACGCGCCAGGAGAACACCGTCATC
CAGACGTGCGTTGTCGCCTGCTCTGCAATAACATTCAGCGGAGGGTTTGGCACGTACATC
CTCGCCATGGGCAAGAACGCGGCCGGAGGAGACGTCAGGGACGGCAAGAACATCGTGGAG
CCGAGCATTGGCCGAACGGTTGCTTTCCTCTTCCTCGTCAGTTTCTCCGGCATGTTCGTC
CTCATGCCGTTCAGGAAGGTCATGATCATCCGGCACCGCCTCACGTACCCTAACGGAATG
GCCACGGCGCACCTCATCAACAGCTTCCACACCCCTCAGGGAGCCAGTAAGGCAAGACAG
CAAGTGGAGATGCTGTTTAGGTCACTGGGAGGAACCATGCTGTGGAACATGTTCCAGTGG
TTTTTCGCTGCTGCAAAGGGCTGTGGCTTCGGAGTGTTCCCTATCTTTGGCCTCGAGGCA
TATAAACACGGATTCTACTTCGACTTCTCCATGTCCAACATCGGCATCGGCATGCTGTGC
CCGTACACCATCACCGTGTCCATGTTCATCGGGAGCGTCGTCTCGTGGGGGCTCGTCTCG
CCGTACCTCGCGACCAAGGCGGGCGTCTGGTACTCTTCGCACCTCAGCCCCAGCAGCCTC
AGCGGCATCAGGGGCTACAAGGTGTTCATCGGCGTCTCCATGATACTCGCCGACGGCCTC
TTCAACTTCCTGTCCATCGTGGCGTACACGCTGCACACCATGCGCAAGAGGCGCAGCAGG
CAGCAGCCGATAATAATCCAAGGCGGCGGCTGCGGTGGCGGTAGTGAAGCCGACGACGGT
GACACGCAGCCGCTACCGTTCCACTGCCTCAACGCTGCTGCCGAGCAACCGAAGAAGAGC
TTCGATGATCGCCGCCGGGCGCAGGTGTTTCTGCGGGACCATATATCCAACTCGGTCAAC
ATCGCGTGCTACGTCCTCCTGTCGATGGTCTCCGTCGCCGCCATACCGTACCTCTACCCG
CAGATGCGGCGCGCGCACGTCGCCCTCATCTACCTCGCCGCGCCGGTCGTCGCGTTCTGC
GACGCGTACGCCTTCGGCGTGACGGACATGAACCTGTCGAGCACCTACGGCAAGCTCGCC
ATGGTGCTCGTGGGCTCCAGCGTGGGGCGCAACGACGGCGGCGTCGTCGCCGGCCTCGTG
GCCTGTGGGATCGTGATGGGGACCATGTCCAACGCCAACAACCTGATGCAGGACCTCAAG
ACGGGGTACCTGACGCTGACCTCGCCGCACACCGTGTTCATCAGCCAGGCCATCGGCACG
GCGCTCGGGTGCGTCGTCAACCCGGTCATGTTCTGGGCCTTCTACAGGGTGGTGCAGAAC
GGCGACACCGACGTCTTCGACGCGCCCTACGCCCGAGTGTACCGCAGCATCGCCATGCTG
AGCGCCGGGCAGGACGGGATACCCATGCACAGCCTCTGGCTCTGCAAGCTCTTCTTCGCG
CTGGCGCTCGCGCTCAGCGTGTTCAGGGAGGTGGCCATGTGGAAGCGCTGGCGTGTGGCA
CGCTACATTCCGAGCATCATCTGTGTGGCCATCGCCTTTGTGGTGCCGGCGCGCATACCC
ATCGACATGTTCGTCGGGAGCTTGGTGCTGTACCTGTGGAGGCGTGCCGACCCTAGCAAG
GCGCCGACGTTCTCGATGGCGGTGGCGTCAGGGATGATCTGTGGGGACGGGCTAGGGATG
CTCTTGTCATCCACGATGGCACTCATGCATGCGCGGGCGCCCATCTGCATCAAGTTCATG
TCTCGTACCGATAATGTAAAGCTAGATGCCTTCTTAGCTACACTGCCTGTGACATAG

Peptide Sequence

PEP ID

Zm00001d054042_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:4:245465326:245468059:-1 gene:Zm00001d054042 transcript:Zm00001d054042_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable metal-nicotianamine transporter YSL7
Sequence

MDDGQHTQEGVSTERAFEADPIPSLSETITARAIAASFILGVALCAVAMKISLNSGFLPS
LTVPAGLVGFYLVRAWIRALDCCFQVPHQLPFTRQENTVIQTCVVACSAITFSGGFGTYI
LAMGKNAAGGDVRDGKNIVEPSIGRTVAFLFLVSFSGMFVLMPFRKVMIIRHRLTYPNGM
ATAHLINSFHTPQGASKARQQVEMLFRSLGGTMLWNMFQWFFAAAKGCGFGVFPIFGLEA
YKHGFYFDFSMSNIGIGMLCPYTITVSMFIGSVVSWGLVSPYLATKAGVWYSSHLSPSSL
SGIRGYKVFIGVSMILADGLFNFLSIVAYTLHTMRKRRSRQQPIIIQGGGCGGGSEADDG
DTQPLPFHCLNAAAEQPKKSFDDRRRAQVFLRDHISNSVNIACYVLLSMVSVAAIPYLYP
QMRRAHVALIYLAAPVVAFCDAYAFGVTDMNLSSTYGKLAMVLVGSSVGRNDGGVVAGLV
ACGIVMGTMSNANNLMQDLKTGYLTLTSPHTVFISQAIGTALGCVVNPVMFWAFYRVVQN
GDTDVFDAPYARVYRSIAMLSAGQDGIPMHSLWLCKLFFALALALSVFREVAMWKRWRVA
RYIPSIICVAIAFVVPARIPIDMFVGSLVLYLWRRADPSKAPTFSMAVASGMICGDGLGM
LLSSTMALMHARAPICIKFMSRTDNVKLDAFLATLPVT

Transcript Sequence

Transcript ID

Zm00001d054042_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:245465326:245468059:-1 gene:Zm00001d054042 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable metal-nicotianamine transporter YSL7
Sequence

ATTGCACCCGTCACATTTGATTTGATTCTGTGCGTATGTCTTGGTTTATTAACTAATGAC
TTAATAGACCAAGACATGCACACAGAATCAAACCAACAATCAAACCCTTTTATTTGTTCC
ATCATATCTATGGGAGGAATCTAATTATGGACGACGGGCAGCATACGCAGGAAGGCGTGT
CGACGGAGCGCGCGTTCGAGGCAGACCCGATCCCATCCTTGTCGGAGACGATCACGGCAC
GGGCGATAGCGGCCAGCTTCATCCTGGGCGTCGCCCTCTGCGCCGTCGCCATGAAGATCA
GCCTCAACTCGGGCTTCCTCCCGTCGCTCACCGTCCCGGCTGGCCTCGTCGGCTTCTACC
TCGTCCGGGCGTGGATCCGTGCCCTCGACTGCTGCTTCCAGGTGCCACACCAGCTGCCAT
TCACGCGCCAGGAGAACACCGTCATCCAGACGTGCGTTGTCGCCTGCTCTGCAATAACAT
TCAGCGGAGGGTTTGGCACGTACATCCTCGCCATGGGCAAGAACGCGGCCGGAGGAGACG
TCAGGGACGGCAAGAACATCGTGGAGCCGAGCATTGGCCGAACGGTTGCTTTCCTCTTCC
TCGTCAGTTTCTCCGGCATGTTCGTCCTCATGCCGTTCAGGAAGGTCATGATCATCCGGC
ACCGCCTCACGTACCCTAACGGAATGGCCACGGCGCACCTCATCAACAGCTTCCACACCC
CTCAGGGAGCCAGTAAGGCAAGACAGCAAGTGGAGATGCTGTTTAGGTCACTGGGAGGAA
CCATGCTGTGGAACATGTTCCAGTGGTTTTTCGCTGCTGCAAAGGGCTGTGGCTTCGGAG
TGTTCCCTATCTTTGGCCTCGAGGCATATAAACACGGATTCTACTTCGACTTCTCCATGT
CCAACATCGGCATCGGCATGCTGTGCCCGTACACCATCACCGTGTCCATGTTCATCGGGA
GCGTCGTCTCGTGGGGGCTCGTCTCGCCGTACCTCGCGACCAAGGCGGGCGTCTGGTACT
CTTCGCACCTCAGCCCCAGCAGCCTCAGCGGCATCAGGGGCTACAAGGTGTTCATCGGCG
TCTCCATGATACTCGCCGACGGCCTCTTCAACTTCCTGTCCATCGTGGCGTACACGCTGC
ACACCATGCGCAAGAGGCGCAGCAGGCAGCAGCCGATAATAATCCAAGGCGGCGGCTGCG
GTGGCGGTAGTGAAGCCGACGACGGTGACACGCAGCCGCTACCGTTCCACTGCCTCAACG
CTGCTGCCGAGCAACCGAAGAAGAGCTTCGATGATCGCCGCCGGGCGCAGGTGTTTCTGC
GGGACCATATATCCAACTCGGTCAACATCGCGTGCTACGTCCTCCTGTCGATGGTCTCCG
TCGCCGCCATACCGTACCTCTACCCGCAGATGCGGCGCGCGCACGTCGCCCTCATCTACC
TCGCCGCGCCGGTCGTCGCGTTCTGCGACGCGTACGCCTTCGGCGTGACGGACATGAACC
TGTCGAGCACCTACGGCAAGCTCGCCATGGTGCTCGTGGGCTCCAGCGTGGGGCGCAACG
ACGGCGGCGTCGTCGCCGGCCTCGTGGCCTGTGGGATCGTGATGGGGACCATGTCCAACG
CCAACAACCTGATGCAGGACCTCAAGACGGGGTACCTGACGCTGACCTCGCCGCACACCG
TGTTCATCAGCCAGGCCATCGGCACGGCGCTCGGGTGCGTCGTCAACCCGGTCATGTTCT
GGGCCTTCTACAGGGTGGTGCAGAACGGCGACACCGACGTCTTCGACGCGCCCTACGCCC
GAGTGTACCGCAGCATCGCCATGCTGAGCGCCGGGCAGGACGGGATACCCATGCACAGCC
TCTGGCTCTGCAAGCTCTTCTTCGCGCTGGCGCTCGCGCTCAGCGTGTTCAGGGAGGTGG
CCATGTGGAAGCGCTGGCGTGTGGCACGCTACATTCCGAGCATCATCTGTGTGGCCATCG
CCTTTGTGGTGCCGGCGCGCATACCCATCGACATGTTCGTCGGGAGCTTGGTGCTGTACC
TGTGGAGGCGTGCCGACCCTAGCAAGGCGCCGACGTTCTCGATGGCGGTGGCGTCAGGGA
TGATCTGTGGGGACGGGCTAGGGATGCTCTTGTCATCCACGATGGCACTCATGCATGCGC
GGGCGCCCATCTGCATCAAGTTCATGTCTCGTACCGATAATGTAAAGCTAGATGCCTTCT
TAGCTACACTGCCTGTGACATAGCTAGCTCCGT