Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053969_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:4:244427853:244433697:-1 gene:Zm00001d053969 gene_biotype:protein_coding transcript_biotype:protein_coding description:protein dimerizations
Sequence

ATGGACGGCGGCCTCGACGACGAGTGGGAAGCTAGCTTCCTCGACGAGGTGATACGCGCG
ACGGATGAGGCTGAGGCTGTCGTCTCCCGCAACCCTAACCCCACTCCCACCCCCGCGCCC
GCTCCCATCCCCACGTATTATCCCTTGGCCGCCGCCCCCGTCTCCTACCTCCCAGCCTCT
TCGGTCTCCTACATCCCTGCCGCTTCGCACCTCCGCTCCGCGATCAGCTTCTCCCCTCCA
CGGGACCTCTCCCAGAGGCCGCCGCTCCCGCCGCCGACCGCTGCCACCAGCACCAGGGAT
GCGCTGGCGACGGGGGCCGACGTCGGTCGCGACTTCTCTCCTCCGCCCCAGCTCTCCCAG
CGCCCGGCGGCTGATGAGGGCAGCCTCGTGGCCTTCGCGGCGTCGAGCTCAGCCAGCGAC
CGCCGCTTCATTAGCACGGGCTGTGGAGAAGCGGGCGCGAAGAGGGAAGCGAGGGAGATC
GAGAGGCTCAAAAGAGAGCTGGACCGTGTCTCCAAGGAAAGGAATGAATTGAAAAATGAA
TGCACCGCGCTGAAAAAGGACAGAACAAAGAAAGATCTTCAAATCAAAGCTAAAGAAGCG
GAGATTCAAAATCTGAAAAAAGCTAATGTCAGCTCCATGAAAGATGTTTGCAGTGCAGGG
ATGAACATTGATCAGTCCTTTCACGCCCCTGCAAATGAGGCTTTGCATACTGGGGTTTCT
TCTAGGCGAACAGACAAGATGAGTGGCAAAGATAAGGATGCCCATTCATTGCGAGACGAT
CTCTATCTAAAGCAAGGGCATCAAACTGATTTACTTGAGGCTTTAGAACTGAGGCGTCGC
ACCATGATTGATAACGGAATGAGTACATCTGGAGTAGTGTCTCTGGAGGAGGACACCCAT
TTTGAACCAAGAAACGCTACATGCAAGGAAATTAAGGCGATAGGAGTCCAGACAGATAAC
ACATCTGACAATGAACATCTTGACTGCAAGAAATTATTGGTTGAGCGTATATCTGGTAAC
CTACGTGCAATGTGGGGCATGTCACCTAACAGTTTATCAAGCAGGAATTTGATATCAAAG
ATCAATGTTTCTTGTTCAGAAGAAATTTTGTCACTTCTCCAGCATACGAGATTGTCAGAC
AACTGTGAACCCTCTTCTCAAGCAATCTCCTCCATGAATGAAGCTATTTCCCAACTGTAT
GACACGTTCATTAAGATGAATAGTGGGAAGATGTCAATACAAACTTTCCTTGAAGCATTG
CTAAATCTATGTGCTTTTGATGATGCTGCTATAGTCAGTAGAACTTTGAGGGTATTCCTC
AAAGTTTTACAGCACTTACTGCAACATGGAGCCAAGTCTAGTGAAAGGAACAATGTTTCT
GTTGAACCATATGTTAACGTACTCATGGAGAACAACCACAAAGACTGTTCGACCTTGTTG
AGACCAGTGGATGCAGAAGATTCATTGAGACTGCATAATATGTTTCTTCCTTTTACTTTC
TGGAGTTCACTTTTCACTGGCATGCTTCAAATTGGGGTCAAGTACTCACAAGAGACAATT
CGTACTGATGCATTATCCATAATGATTCTCATTGTAAGGACAACAGATCCCATAGAGGAA
CGCCAGAAATTCGGATTTACTTCAGTAATGACGAGATTGCATCTGCTATTGCAGAAAGAG
AACGGATTGCTTGTTAAGAAGCATTCTGTGCGTCTACTTTTCTTGCTTCTGAATTGCCCA
GTGATGTTGAAGTTGCTGTGTAGTGGAGGCAAAGACGGCTCCAAACAGATGGGATCGGAA
GCTTGTGAAAGTAATAGATCACAAGAAGTCATAAGCTCAGTTCTTGTGGATTTATCTGAT
TGTTTGACATGTGGGGAAACTTGTTCTCTGGGGATTGAGCTTTGCAGGCTCGTCATCATT
CTGCTAGCTTATATAGCTTCCAGTGGCAAATTGGGATATGAGGTGCTTTTAGTTCCAGTG
AGTGCCCGTGGTGCCAGTTTTTTGGAGATGATAATGGAAGTCCTTGCATCGCAGATGCAA
TATGAAACACGAGAGTTACTAAAAGAAAGGTACATCATACTTGGCTACCACAGTCTTGTG
CGTTCCTAG

Peptide Sequence

PEP ID

Zm00001d053969_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:4:244427853:244433697:-1 gene:Zm00001d053969 transcript:Zm00001d053969_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:protein dimerizations
Sequence

MDGGLDDEWEASFLDEVIRATDEAEAVVSRNPNPTPTPAPAPIPTYYPLAAAPVSYLPAS
SVSYIPAASHLRSAISFSPPRDLSQRPPLPPPTAATSTRDALATGADVGRDFSPPPQLSQ
RPAADEGSLVAFAASSSASDRRFISTGCGEAGAKREAREIERLKRELDRVSKERNELKNE
CTALKKDRTKKDLQIKAKEAEIQNLKKANVSSMKDVCSAGMNIDQSFHAPANEALHTGVS
SRRTDKMSGKDKDAHSLRDDLYLKQGHQTDLLEALELRRRTMIDNGMSTSGVVSLEEDTH
FEPRNATCKEIKAIGVQTDNTSDNEHLDCKKLLVERISGNLRAMWGMSPNSLSSRNLISK
INVSCSEEILSLLQHTRLSDNCEPSSQAISSMNEAISQLYDTFIKMNSGKMSIQTFLEAL
LNLCAFDDAAIVSRTLRVFLKVLQHLLQHGAKSSERNNVSVEPYVNVLMENNHKDCSTLL
RPVDAEDSLRLHNMFLPFTFWSSLFTGMLQIGVKYSQETIRTDALSIMILIVRTTDPIEE
RQKFGFTSVMTRLHLLLQKENGLLVKKHSVRLLFLLLNCPVMLKLLCSGGKDGSKQMGSE
ACESNRSQEVISSVLVDLSDCLTCGETCSLGIELCRLVIILLAYIASSGKLGYEVLLVPV
SARGASFLEMIMEVLASQMQYETRELLKERYIILGYHSLVRS

Transcript Sequence

Transcript ID

Zm00001d053969_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:244427853:244433697:-1 gene:Zm00001d053969 gene_biotype:protein_coding transcript_biotype:protein_coding description:protein dimerizations
Sequence

GCAGCTGCCGCCGCCAGTGCCGGTGAGAAGAGTAGGGAGGCGCAGCGCGGGGATGGACGG
CGGCCTCGACGACGAGTGGGAAGCTAGCTTCCTCGACGAGGTGATACGCGCGACGGATGA
GGCTGAGGCTGTCGTCTCCCGCAACCCTAACCCCACTCCCACCCCCGCGCCCGCTCCCAT
CCCCACGTATTATCCCTTGGCCGCCGCCCCCGTCTCCTACCTCCCAGCCTCTTCGGTCTC
CTACATCCCTGCCGCTTCGCACCTCCGCTCCGCGATCAGCTTCTCCCCTCCACGGGACCT
CTCCCAGAGGCCGCCGCTCCCGCCGCCGACCGCTGCCACCAGCACCAGGGATGCGCTGGC
GACGGGGGCCGACGTCGGTCGCGACTTCTCTCCTCCGCCCCAGCTCTCCCAGCGCCCGGC
GGCTGATGAGGGCAGCCTCGTGGCCTTCGCGGCGTCGAGCTCAGCCAGCGACCGCCGCTT
CATTAGCACGGGCTGTGGAGAAGCGGGCGCGAAGAGGGAAGCGAGGGAGATCGAGAGGCT
CAAAAGAGAGCTGGACCGTGTCTCCAAGGAAAGGAATGAATTGAAAAATGAATGCACCGC
GCTGAAAAAGGACAGAACAAAGAAAGATCTTCAAATCAAAGCTAAAGAAGCGGAGATTCA
AAATCTGAAAAAAGCTAATGTCAGCTCCATGAAAGATGTTTGCAGTGCAGGGATGAACAT
TGATCAGTCCTTTCACGCCCCTGCAAATGAGGCTTTGCATACTGGGGTTTCTTCTAGGCG
AACAGACAAGATGAGTGGCAAAGATAAGGATGCCCATTCATTGCGAGACGATCTCTATCT
AAAGCAAGGGCATCAAACTGATTTACTTGAGGCTTTAGAACTGAGGCGTCGCACCATGAT
TGATAACGGAATGAGTACATCTGGAGTAGTGTCTCTGGAGGAGGACACCCATTTTGAACC
AAGAAACGCTACATGCAAGGAAATTAAGGCGATAGGAGTCCAGACAGATAACACATCTGA
CAATGAACATCTTGACTGCAAGAAATTATTGGTTGAGCGTATATCTGGTAACCTACGTGC
AATGTGGGGCATGTCACCTAACAGTTTATCAAGCAGGAATTTGATATCAAAGATCAATGT
TTCTTGTTCAGAAGAAATTTTGTCACTTCTCCAGCATACGAGATTGTCAGACAACTGTGA
ACCCTCTTCTCAAGCAATCTCCTCCATGAATGAAGCTATTTCCCAACTGTATGACACGTT
CATTAAGATGAATAGTGGGAAGATGTCAATACAAACTTTCCTTGAAGCATTGCTAAATCT
ATGTGCTTTTGATGATGCTGCTATAGTCAGTAGAACTTTGAGGGTATTCCTCAAAGTTTT
ACAGCACTTACTGCAACATGGAGCCAAGTCTAGTGAAAGGAACAATGTTTCTGTTGAACC
ATATGTTAACGTACTCATGGAGAACAACCACAAAGACTGTTCGACCTTGTTGAGACCAGT
GGATGCAGAAGATTCATTGAGACTGCATAATATGTTTCTTCCTTTTACTTTCTGGAGTTC
ACTTTTCACTGGCATGCTTCAAATTGGGGTCAAGTACTCACAAGAGACAATTCGTACTGA
TGCATTATCCATAATGATTCTCATTGTAAGGACAACAGATCCCATAGAGGAACGCCAGAA
ATTCGGATTTACTTCAGTAATGACGAGATTGCATCTGCTATTGCAGAAAGAGAACGGATT
GCTTGTTAAGAAGCATTCTGTGCGTCTACTTTTCTTGCTTCTGAATTGCCCAGTGATGTT
GAAGTTGCTGTGTAGTGGAGGCAAAGACGGCTCCAAACAGATGGGATCGGAAGCTTGTGA
AAGTAATAGATCACAAGAAGTCATAAGCTCAGTTCTTGTGGATTTATCTGATTGTTTGAC
ATGTGGGGAAACTTGTTCTCTGGGGATTGAGCTTTGCAGGCTCGTCATCATTCTGCTAGC
TTATATAGCTTCCAGTGGCAAATTGGGATATGAGGTGCTTTTAGTTCCAGTGAGTGCCCG
TGGTGCCAGTTTTTTGGAGATGATAATGGAAGTCCTTGCATCGCAGATGCAATATGAAAC
ACGAGAGTTACTAAAAGAAAGGTACATCATACTTGGCTACCACAGTCTTGTGCGTTCCTA
G