Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053935_T056
CDS Infomation

cds chromosome:B73_RefGen_v4:4:243876795:243882745:1 gene:Zm00001d053935 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable phosphoinositide phosphatase SAC9
Sequence

ATGTTAACCAATAGTGAACGTGCTCCTGAATTTATGGAGTTTATCAATAAAAAATCATCA
AGTGCTCACTGTAATCTAGGTTCCAAGTCTTTTGGAAATTCTTCCATGCCTGGGAATGAT
TCTCATGGTATTGATGAGTCTTATACTAAAAGTTCATCATTAGTTCAACCGTGTGGTTCG
GAAAATTTGTTGGATTTTCTCACAGGTGATTTTGACATGTCGGAGTCCCATATAACTCAA
AATACTTTTGGTGCTGGAGAACAAACAAACTTCTTAGATGATGGATTTGATGTTAATCCT
TTCGCCCCTGCATTGGAAGTGCCTGTTCCTGTTGCTAAAGTAAACAAGGAGGTTGAAGAA
TGTGGCAGCACCCAGCTTTATATTAAATTTTTTGAATCCCTTTCTGGCTATAATAAGGGA
AAGGGTCTTGACTTTGAGCAAACGATGAAGCTTGAAATAAAACGTCTCCGTCTTGGTCTT
TCAGCCGCTGAAAGGGACCAGGCGTTGTTATCAATTGGTGTAATTCCTGCCACATTAGAT
CCAAACCGTTTAATTGATTATTCTTACCTATTGAAGTTATCCAGCTTAGCTGATAATCTA
GCACTGCTGGGCCATACAGTCCTTGAGGATCGCGCTAATGCTTCAATAGGGCTTGAAAAG
GGCAGTGAACATGCTATAGACTTTTGGAACATCAGTGAAAATGATGAATTCTGCTATGGT
GGGGCATGTGAAGTCCGTGCTCTGTCTTCATTACAAGCTTTAGCATCTAGAGAAAATCAA
TCGGTATTCATGGAATGTTTCCAGTGTGAAAAGACAGTTTGCAAAGCTTGCTGTGCTGGG
AAAGGGGCCTTCCTTTTGCTTAACACCTACAGGGAGTTGAAGATATATGGTGGGAGTCAA
AGTGGTGGCTACTCAGCACTCACAGATAGTTTTGTGTGCAAATCGTGCTGCAGTGAAATT
ATCAAACGTGCATTGTATGTGGATTATGTCCGGGTTCTTCATAGTTTGCGCAGAAAAGAT
CGTTCAGAGAAAGCAGCACTGAGTGCTGTGAATCAGGTCTGCCAACTGGAGTACAAGAAA
GCATCTGATTTATCTCAAAGTATTCAATTTGGTCAGAGACAATTGAAGCAGATCCTTGAT
GGTGAAGAATCCCTTGCAGAATTTCCATATGCAAACTTTTTACAAATGGTTGAAACTGCC
AATGACTCTGAACCACTGCTTTCATTACTGGCGCCTTTTGGTACTGGAGAGTATACGTCT
TACTGGAAAGCTCCACAAGGTATCACTTCAGTGGAATTCTCAATTGTTCTTGGTGGTTTA
TCAGATATTGCAGGAGTTTCCATAATTGTCAGTTCTTGCGGTTACTCAGCATCTGACTGC
CCAATTGTAGAGATATGGGCGAGTAATAAAATACACCGAGAAGATCGTACATTTATAGGA
AAGTGGGATGTACAGGATATAATATCTTCATCTCCACAGCTTCGTGGACCTGAAAAATCT
AGTAGATTGAGTGAAGAACCAAGACACATTAAATTTCACTTCCCAAATCCTATCCGTTGT
CGTATAATTTCAATAAAAATGACACTTTCCCATAGAGGTTCTCATTCAACCAAGTTTAGT
GAGGAGTTTGATCTTCTATCATTGAATGATAGCTCATCTTATGAATCGAAGCCAACCAAT
TTACATAATTCATTTATCCATGCAAAAAGAATTGTAGTTTTTGGCAGTTTGTTGAGAAAG
GAGATGGAGCCTGACACATCAGGGGGGATAATGAGAATGAAAAGTTATTTAGACAGATCA
CCGGCCTTGGGGAGATTTAGGATCCCAGTTGAAGCTGAGAGGCTGAGAGATAATGATCTT
GTTCTTGAGCAATATCTCTTAGCTAATTCACCTGGAATAGCTGGATTCCGGCTTGATTCT
TTCAGTGTTATAAGACCTCGTGTGACCCATTCACCTTCTTCATCAGAGTTGGACATGAGG
GAGTTTTCATTGACACGAATGGAAGATAGATTTATAAACCCAGCAATTCTGTATATACAG
GTCACAGTTGTTAAGGAGTCCGGCAAGTTGGTTGTAGAGGAATACCGTTTACCAGAAGTA
AAAGCAAACACGCCACTATATTTTGATTTCCCAGATCTACAACAGGATGCGCGCTGTGTT
ATCTTTAGATTGCTTGGTGACGTCACTGCCTTTGTCGACGACATTTCTGAGCTTGAGAAC
TTAAACTTGCGGAATCTTCCTTTGGCGTCGGGACTGTCTTTGTCAAATAAGATCAAGTTG
TACTACTATGCTGATACATATGAGATGGGAAAGATCGGCAGTCTCTCAGCTGTATAA

Peptide Sequence

PEP ID

Zm00001d053935_P056
PEP Infomation

pep chromosome:B73_RefGen_v4:4:243876795:243882745:1 gene:Zm00001d053935 transcript:Zm00001d053935_T056 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable phosphoinositide phosphatase SAC9
Sequence

MLTNSERAPEFMEFINKKSSSAHCNLGSKSFGNSSMPGNDSHGIDESYTKSSSLVQPCGS
ENLLDFLTGDFDMSESHITQNTFGAGEQTNFLDDGFDVNPFAPALEVPVPVAKVNKEVEE
CGSTQLYIKFFESLSGYNKGKGLDFEQTMKLEIKRLRLGLSAAERDQALLSIGVIPATLD
PNRLIDYSYLLKLSSLADNLALLGHTVLEDRANASIGLEKGSEHAIDFWNISENDEFCYG
GACEVRALSSLQALASRENQSVFMECFQCEKTVCKACCAGKGAFLLLNTYRELKIYGGSQ
SGGYSALTDSFVCKSCCSEIIKRALYVDYVRVLHSLRRKDRSEKAALSAVNQVCQLEYKK
ASDLSQSIQFGQRQLKQILDGEESLAEFPYANFLQMVETANDSEPLLSLLAPFGTGEYTS
YWKAPQGITSVEFSIVLGGLSDIAGVSIIVSSCGYSASDCPIVEIWASNKIHREDRTFIG
KWDVQDIISSSPQLRGPEKSSRLSEEPRHIKFHFPNPIRCRIISIKMTLSHRGSHSTKFS
EEFDLLSLNDSSSYESKPTNLHNSFIHAKRIVVFGSLLRKEMEPDTSGGIMRMKSYLDRS
PALGRFRIPVEAERLRDNDLVLEQYLLANSPGIAGFRLDSFSVIRPRVTHSPSSSELDMR
EFSLTRMEDRFINPAILYIQVTVVKESGKLVVEEYRLPEVKANTPLYFDFPDLQQDARCV
IFRLLGDVTAFVDDISELENLNLRNLPLASGLSLSNKIKLYYYADTYEMGKIGSLSAV

Transcript Sequence

Transcript ID

Zm00001d053935_T056
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:243876795:243882745:1 gene:Zm00001d053935 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable phosphoinositide phosphatase SAC9
Sequence

GTATCAAGAACACCCATTACTCTTGGCGAGATTGAAGTACTTGGAGTTTCCCTTCCATGG
GCAGACATGTTAACCAATAGTGAACGTGCTCCTGAATTTATGGAGTTTATCAATAAAAAA
TCATCAAGTGCTCACTGTAATCTAGGTTCCAAGTCTTTTGGAAATTCTTCCATGCCTGGG
AATGATTCTCATGGTATTGATGAGTCTTATACTAAAAGTTCATCATTAGTTCAACCGTGT
GGTTCGGAAAATTTGTTGGATTTTCTCACAGGTGATTTTGACATGTCGGAGTCCCATATA
ACTCAAAATACTTTTGGTGCTGGAGAACAAACAAACTTCTTAGATGATGGATTTGATGTT
AATCCTTTCGCCCCTGCATTGGAAGTGCCTGTTCCTGTTGCTAAAGTAAACAAGGAGGTT
GAAGAATGTGGCAGCACCCAGCTTTATATTAAATTTTTTGAATCCCTTTCTGGCTATAAT
AAGGGAAAGGGTCTTGACTTTGAGCAAACGATGAAGCTTGAAATAAAACGTCTCCGTCTT
GGTCTTTCAGCCGCTGAAAGGGACCAGGCGTTGTTATCAATTGGTGTAATTCCTGCCACA
TTAGATCCAAACCGTTTAATTGATTATTCTTACCTATTGAAGTTATCCAGCTTAGCTGAT
AATCTAGCACTGCTGGGCCATACAGTCCTTGAGGATCGCGCTAATGCTTCAATAGGGCTT
GAAAAGGGCAGTGAACATGCTATAGACTTTTGGAACATCAGTGAAAATGATGAATTCTGC
TATGGTGGGGCATGTGAAGTCCGTGCTCTGTCTTCATTACAAGCTTTAGCATCTAGAGAA
AATCAATCGGTATTCATGGAATGTTTCCAGTGTGAAAAGACAGTTTGCAAAGCTTGCTGT
GCTGGGAAAGGGGCCTTCCTTTTGCTTAACACCTACAGGGAGTTGAAGATATATGGTGGG
AGTCAAAGTGGTGGCTACTCAGCACTCACAGATAGTTTTGTGTGCAAATCGTGCTGCAGT
GAAATTATCAAACGTGCATTGTATGTGGATTATGTCCGGGTTCTTCATAGTTTGCGCAGA
AAAGATCGTTCAGAGAAAGCAGCACTGAGTGCTGTGAATCAGGTCTGCCAACTGGAGTAC
AAGAAAGCATCTGATTTATCTCAAAGTATTCAATTTGGTCAGAGACAATTGAAGCAGATC
CTTGATGGTGAAGAATCCCTTGCAGAATTTCCATATGCAAACTTTTTACAAATGGTTGAA
ACTGCCAATGACTCTGAACCACTGCTTTCATTACTGGCGCCTTTTGGTACTGGAGAGTAT
ACGTCTTACTGGAAAGCTCCACAAGGTATCACTTCAGTGGAATTCTCAATTGTTCTTGGT
GGTTTATCAGATATTGCAGGAGTTTCCATAATTGTCAGTTCTTGCGGTTACTCAGCATCT
GACTGCCCAATTGTAGAGATATGGGCGAGTAATAAAATACACCGAGAAGATCGTACATTT
ATAGGAAAGTGGGATGTACAGGATATAATATCTTCATCTCCACAGCTTCGTGGACCTGAA
AAATCTAGTAGATTGAGTGAAGAACCAAGACACATTAAATTTCACTTCCCAAATCCTATC
CGTTGTCGTATAATTTCAATAAAAATGACACTTTCCCATAGAGGTTCTCATTCAACCAAG
TTTAGTGAGGAGTTTGATCTTCTATCATTGAATGATAGCTCATCTTATGAATCGAAGCCA
ACCAATTTACATAATTCATTTATCCATGCAAAAAGAATTGTAGTTTTTGGCAGTTTGTTG
AGAAAGGAGATGGAGCCTGACACATCAGGGGGGATAATGAGAATGAAAAGTTATTTAGAC
AGATCACCGGCCTTGGGGAGATTTAGGATCCCAGTTGAAGCTGAGAGGCTGAGAGATAAT
GATCTTGTTCTTGAGCAATATCTCTTAGCTAATTCACCTGGAATAGCTGGATTCCGGCTT
GATTCTTTCAGTGTTATAAGACCTCGTGTGACCCATTCACCTTCTTCATCAGAGTTGGAC
ATGAGGGAGTTTTCATTGACACGAATGGAAGATAGATTTATAAACCCAGCAATTCTGTAT
ATACAGGTCACAGTTGTTAAGGAGTCCGGCAAGTTGGTTGTAGAGGAATACCGTTTACCA
GAAGTAAAAGCAAACACGCCACTATATTTTGATTTCCCAGATCTACAACAGGATGCGCGC
TGTGTTATCTTTAGATTGCTTGGTGACGTCACTGCCTTTGTCGACGACATTTCTGAGCTT
GAGAACTTAAACTTGCGGAATCTTCCTTTGGCGTCGGGACTGTCTTTGTCAAATAAGATC
AAGTTGTACTACTATGCTGATACATATGAGATGGGAAAGATCGGCAGTCTCTCAGCTGTA
TAATGTATGTGAGGTCGTCGTACATGCCAACCTGGGATGGTAACCCGTCCCTAGAAGATT
GTTGTAACCTACTGTTTCTACGTGTTGTTGTGGAAGTAAGAGCTGCTGCTACAGATACAT
GATGCTTTTTTTTTACTGCTTCTGTATTCTTGCTTCTTTTTGCTTTTGATTAGATGACCC
CAGTTTGAGGGATGTAGGGATTTTGCCTGTAGAATTTCTGGAAATTCATCTCTTTTTTTA
ATGTAGAATAGCCGGAAATTCAATTCGATCGCAGTCCACGAAACTGCCAGCTACGTTTGT
CGATACCTGTATTGGGACCTGGATTATTGTATAGAGCCAAGAACTTGCATTG