Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053931_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:4:243762030:243766760:1 gene:Zm00001d053931 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peroxisome biogenesis protein 16
Sequence

ATGCTCTTACAAGGAGGGGAGGTGGTAAATGAAGAAGAGGTGACCGTTCTTGAAAATAGT
TATGGAGTAAATGGTAATGGAGTACCAGCCATCTATCCGATGGATGGACATGCAGAAAAT
GGTCACAAAACTATGGCCAAGGGTCTGGATGGTAAAAATGGATTTGTATCTAAGAGTCTT
GAGAAAAGAGCAGTAGCTGCTTTGAACAAATTTGGTGAGAACGCAAAGATGATGTCTGAT
CCTATGTGGATTCGGAGGCTCCAACCTACTCCTGAGCCAACTGTGATGGTTGCCGAGAAG
CCAACTTTGGCAAGTATTTGGTCTGCTAAAGGCGGTACTGGGCGCTTGTTTGTTTTAGGG
GAGGTTGTTCACATATTCAGGCCACTTGTATATGTACTTCTGATCAGAAAGTTTGGAATA
AAATCGTGGACCCCGTGGCTAGTGTCGCTAGCTGTGGAACTCACAAGTCTAGGCGTCCAT
TCCCATGCAACCGATATGAATCACAGATTAGGAAAAGTGCATCAGCTCAGTTCTGCTGAG
AGGGATGAGTTGAAAAGGCGAAAGATGATGTGGGCTCTTTATGTGATGAGAGATCCTTTC
TTTGCCAGTTACAGCAAGCGTCACCTCCTGAAGGCTGAACAGGTTCTGAATCCGGTGCCA
TTGATTGGCTTCCTTACAGGGAAACTTGTAGAGCTACTGGAGGGGATTCAGACGAGATAC
ACGTACACATCAGGTTCATAG

Peptide Sequence

PEP ID

Zm00001d053931_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:4:243762030:243766760:1 gene:Zm00001d053931 transcript:Zm00001d053931_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peroxisome biogenesis protein 16
Sequence

MLLQGGEVVNEEEVTVLENSYGVNGNGVPAIYPMDGHAENGHKTMAKGLDGKNGFVSKSL
EKRAVAALNKFGENAKMMSDPMWIRRLQPTPEPTVMVAEKPTLASIWSAKGGTGRLFVLG
EVVHIFRPLVYVLLIRKFGIKSWTPWLVSLAVELTSLGVHSHATDMNHRLGKVHQLSSAE
RDELKRRKMMWALYVMRDPFFASYSKRHLLKAEQVLNPVPLIGFLTGKLVELLEGIQTRY
TYTSGS

Transcript Sequence

Transcript ID

Zm00001d053931_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:243762030:243766760:1 gene:Zm00001d053931 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peroxisome biogenesis protein 16
Sequence

GTCTTTACTAGAGAGAGCGCCAATCCTCCCCATCCCGACCGCCGCCCCCACCTCCTCCGC
GGCCGCCTCGCGGCGATTCCGTCCGCATCTGACCCCGATCCCAGGGGCATCGTCCTCACC
TCCTCCGCCAGCTGCCGCTCTTCCGTCCTCTTCCGCAGCTTCTGCGTGGGGAAGAGGCGG
TGGCGGCCGAACCAGCGTAGTCGTCGCCGACGCCGCTGCCAGCCGCCATGGAGGCGTACA
AGCTCTGGGTGCGCAGGAACAGGGACCTCGTCCGATCCCTCGAGTCCCTCGCCAACGGGC
TCACATGGATACTCCCCGAGCGCTTCGCCAACTCTGAGATCGCACCGGAAGCAGGTGATC
TCAAGGATTCTTCCTTCAGTTGGGAGTAACATTTAGTTCCATTGTGTGGTTTTTGCTATC
TGAATATATTGCTGGTCACACATATGTTTGCTGGTCACACATATGTTTGCTGGTCACACA
TATGTTTGGTGTCTCATAGATTTGGATTTTGAGCTTTACCAGTTTCTTATCTTTGTGATT
GCAAGCATTTAAGCTTATCAAACTGTGTGAGCTGGTATGATTTCGAAATAGGATGTGCAA
CTTCCATGCTGCAAATATACTTGTGAGGTGTGAGCTGCTAGAAGTAGAATTTGCTGAAAT
TGTTATAAAGAGGCATAGCTCATGTATCTTGTGATATCCTGCATTTCCTAGTGACTGTTA
AGATATATGAATGACAGGCGTGTGAAGTTGACGAGTGCATGTTGCTTGTGATTTCACGTG
TCAAAGCCCCCTTTTTTCCATAATTATTAATAAGTGACATTATATAGGGAACATATAACA
GCAAAAAATTGGCAACTGTATTTCCTATTGGGTAATGTTTCCTATATTGGTGTTACCGTT
ACTATAAATGATTTCCTAGGTCCCTGCAATCTCTTGTCGGCATGCACAGAGTGATACATG
ATCTTTAGTGGTTGAGGCCAAAATGTGATCCATATTATTGTGCCAAAATAATCTGTTTGT
TACACTACCACCCAAGTGCAAACTGCAAACCATCCTGTCCTGTTTGATATTGCTCTAAAG
CACCTAGGTACCAGAAGTCCAGTATGCTACCATGGTCGCTATGTGAGTTATCTCATAAAG
GAAATAAATGATATTTGTTCCTATCAGGCCATCTATTTCTATGGAACTCATATAGTCATG
TGTAGCTGCCTAGGGTGGGCTTAGCACTAGAGTGATTAAGCTTATTTCAGAATTTGTGTT
CGCATTTTTATCCTTACCTAAAAAGAATTACTAGTGTTGTATGCTCATTTTGTGCTATTG
GACGTAAGAGACCATTGGAATATGTTTCACTGACCAATCTGAATAAGCCTTAGTGTTTAA
TATTTCTGTATTGAGCATATATGTTTTGCTTCAAGGTATTATTTATCAGGGAATCAAATT
AATTGCTATTACCAAAAATATGTAATTGCACACTGTTTGTTTTCCCAACTATTTTGATAC
TAATCTGAGAAGAAATTGCAGAGATTAGCTCTTGAATTTACTATAATTTTGTCTAGGTGA
TTCAATCCCCTATGCAATAAATCAATATTTTGTTCTGTTTGTAACATATGCATACTGATA
TAGTAATGTTTTCAAGAACCAAAGACATTGTTTACAGTTTTGATTGAGAGAAGTCTATTT
ATAAGACAAGCTGCTGCTCGTTTTGATCTTTTGCTGCATCAGATAGTTCGTTTATTGGTT
GGCTCTTGCTGCCCATCTAGAGTACTGTAGGAGTATGGCAATTGACCAACTATGTAGTGG
CATACATCAGCCATGTATTAGTAGTTGGGGGCTGAGCCAAGCCATGTACTAGCGTACTAT
ATAGTCGGTACTAGACTTGTATATATACTAGACAATGTAATAGAGGAAGTAGTTCAGTTT
GATACACATTCAGTGCCTACATGTGTGCTGAGTGTATGCTCTGTTCTCGCCTCAGCTCAT
CTTCTACCTAGCTGTGAGTCGTGAGAGTGAGCTGATTGCTCACCTGTGCAGGGTGATCAA
GGGCCAACATATTTTGAGTGGTATATACTTGATTTCTTCACATTAACACATACTTCATTG
TCTGAACAGTATATGCACTACTGGGTATTGTGAGTTCTGTCAATCAGCACATAATTGATG
CGCCCACTGAGAATCACTCATTTGCCTCCAAGGAACAATCTATCCCATGGGGTCTTGTTG
TCTCTGTACTAAAGGATGTGGAGGCGGTTGTTGAGGTTGCTGCCCAGCACTTTGTTGGCG
ATGATCGCAAGTGGAGCTTTCTTGCTGTTACAGAAGCAGTGAAAGCAGGTGTCAGGTTAG
CTGCTTTTCGGGAGAGTGGATACAAGATGCTCTTACAAGGAGGGGAGGTGGTAAATGAAG
AAGAGGTGACCGTTCTTGAAAATAGTTATGGAGTAAATGGTAATGGAGTACCAGCCATCT
ATCCGATGGATGGACATGCAGAAAATGGTCACAAAACTATGGCCAAGGGTCTGGATGGTA
AAAATGGATTTGTATCTAAGAGTCTTGAGAAAAGAGCAGTAGCTGCTTTGAACAAATTTG
GTGAGAACGCAAAGATGATGTCTGATCCTATGTGGATTCGGAGGCTCCAACCTACTCCTG
AGCCAACTGTGATGGTTGCCGAGAAGCCAACTTTGGCAAGTATTTGGTCTGCTAAAGGCG
GTACTGGGCGCTTGTTTGTTTTAGGGGAGGTTGTTCACATATTCAGGCCACTTGTATATG
TACTTCTGATCAGAAAGTTTGGAATAAAATCGTGGACCCCGTGGCTAGTGTCGCTAGCTG
TGGAACTCACAAGTCTAGGCGTCCATTCCCATGCAACCGATATGAATCACAGATTAGGAA
AAGTGCATCAGCTCAGTTCTGCTGAGAGGGATGAGTTGAAAAGGCGAAAGATGATGTGGG
CTCTTTATGTGATGAGAGATCCTTTCTTTGCCAGTTACAGCAAGCGTCACCTCCTGAAGG
CTGAACAGGTTCTGAATCCGGTGCCATTGATTGGCTTCCTTACAGGGAAACTTGTAGAGC
TACTGGAGGGGATTCAGACGAGATACACGTACACATCAGGTTCATAGAGATGGCCAATCT
GAGCCTGCTGCTCGCCTCTCGATTTGCCCTGGCGGACATGTGCTTTGTGCGAGTTGGTTG
ATGGTTAATGGTTAATGGCTAGGAACTGGTGCTTAATCCTGAAACCCGTACTGCTGTTTT
TCTTGCCAACTGTGGCATCGTCGTCTTGTGGCTGCGAAGCTGCAGCCACCTCGTTCGTGT
ATGGCGGCAGATGAGACAATTCATAATCTAAGTATATAGATATAAATAGTAGTATTACCG
GTTTGTTTGTATTTACGATTTATCGTGAACTGATGGAACATAATGTGTATACAGCGAAAA
TTTATCTGATT