Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053913_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:243607475:243612187:1 gene:Zm00001d053913 gene_biotype:protein_coding transcript_biotype:protein_coding description:HVA22-like protein i
Sequence

ATGCTTCCCCCTCCCGTGCCGGCTTGGGCAGCAGTTGGGCTCTCTCGGCCCGCCTCCTTC
CCGAGCACGCACGCCGCCTCGCTTCCAATTCTTCCCCCCCTCTCCTCGTCCGCTCCGCTC
CGCTCCTGCGTTGCCGTGGAGTGCCGCCCGGGGCTCCATTCCATTCCACCCGTAGCCCGG
TCCCCCCGCGCCGCCGGCGCGCCGGTTCCTTCGGTTCCCGGGATCAAGATGATTGGTTCA
TTCATTACCGGAATGCTAACGCTTGTTCTCGGATACGCGTACCCTGCATACGACTGCTAC
AAGACAGTGGAGCTGAACAGGCCTGAGGTCGAGCAGCTGCGGTTCTGGTGTCAGTACTGG
ATTTTACTCGCGTTTCTCACCGTACTGGAGAGAGTTGGGGAAAGTTTCGTATCATGGTTG
CCAATGTATAGTGAAGCAAAGCTCGCATTTATCGTGTACTTGTGGTATCCAAAGACACGG
GGGACTGCCTATGTATACGAGTCATTCTTCAAGCCATACATTGCAAAACATGAAACTGAG
ATTGATCGAAATCTGCTTGAGTTGAGGACAAGGGCCGGTGACATGGCAGTTCTTTATTTC
CAGAGGGTTACAAACTATGCTCAGACAAGGTCTTATGAAATCTTGCAGTATATTGCCTCA
CAGTCACCGACTCAAAGACAGGCACATCAGCAGCAGCAACGCCCACCACCGCCACGGACT
CGGCAGGTCAACCCTGCACCTCCACCTATTCCCGCACCCTCCGCGCCTCCGATGCCACCA
CAGCCTGCCCAAGCCCAAGTTCCTCCCACTCCACCAAGGCCCCTAGTTCCAGTGGTTCCT
CCTGGCGCAGTGCCTCCTGCCCCGCCACCAACTGCTCCTGAAGCCACCGCCACCAACGGT
CTTCAGGACACCGAAACCATGCAGGTCGACCCACCTCGTGCTTCACTGAGCGGCCCACCA
CTACCACCTGAGGAGACGCTCATCGAGGAGGCGATCCGGCTGACCCGGGGCCGGCTCAGG
AGGCGCTTGGCTGGGGGATCTGGACCACCGCAAAATTAG

Peptide Sequence

PEP ID

Zm00001d053913_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:243607475:243612187:1 gene:Zm00001d053913 transcript:Zm00001d053913_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:HVA22-like protein i
Sequence

MLPPPVPAWAAVGLSRPASFPSTHAASLPILPPLSSSAPLRSCVAVECRPGLHSIPPVAR
SPRAAGAPVPSVPGIKMIGSFITGMLTLVLGYAYPAYDCYKTVELNRPEVEQLRFWCQYW
ILLAFLTVLERVGESFVSWLPMYSEAKLAFIVYLWYPKTRGTAYVYESFFKPYIAKHETE
IDRNLLELRTRAGDMAVLYFQRVTNYAQTRSYEILQYIASQSPTQRQAHQQQQRPPPPRT
RQVNPAPPPIPAPSAPPMPPQPAQAQVPPTPPRPLVPVVPPGAVPPAPPPTAPEATATNG
LQDTETMQVDPPRASLSGPPLPPEETLIEEAIRLTRGRLRRRLAGGSGPPQN

Transcript Sequence

Transcript ID

Zm00001d053913_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:243607475:243612187:1 gene:Zm00001d053913 gene_biotype:protein_coding transcript_biotype:protein_coding description:HVA22-like protein i
Sequence

GACAGAGATGCTTCCCCCTCCCGTGCCGGCTTGGGCAGCAGTTGGGCTCTCTCGGCCCGC
CTCCTTCCCGAGCACGCACGCCGCCTCGCTTCCAATTCTTCCCCCCCTCTCCTCGTCCGC
TCCGCTCCGCTCCTGCGTTGCCGTGGAGTGCCGCCCGGGGCTCCATTCCATTCCACCCGT
AGCCCGGTCCCCCCGCGCCGCCGGCGCGCCGGTTCCTTCGGTTCCCGGGATCAAGATGAT
TGGTTCATTCATTACCGGAATGCTAACGCTTGTTCTCGGATACGCGTACCCTGCATACGA
CTGCTACAAGACAGTGGAGCTGAACAGGCCTGAGGTCGAGCAGCTGCGGTTCTGGTGTCA
GTACTGGATTTTACTCGCGTTTCTCACCGTACTGGAGAGAGTTGGGGAAAGTTTCGTATC
ATGGTTGCCAATGTATAGTGAAGCAAAGCTCGCATTTATCGTGTACTTGTGGTATCCAAA
GACACGGGGGACTGCCTATGTATACGAGTCATTCTTCAAGCCATACATTGCAAAACATGA
AACTGAGATTGATCGAAATCTGCTTGAGTTGAGGACAAGGGCCGGTGACATGGCAGTTCT
TTATTTCCAGAGGGTTACAAACTATGCTCAGACAAGGTCTTATGAAATCTTGCAGTATAT
TGCCTCACAGTCACCGACTCAAAGACAGGCACATCAGCAGCAGCAACGCCCACCACCGCC
ACGGACTCGGCAGGTCAACCCTGCACCTCCACCTATTCCCGCACCCTCCGCGCCTCCGAT
GCCACCACAGCCTGCCCAAGCCCAAGTTCCTCCCACTCCACCAAGGCCCCTAGTTCCAGT
GGTTCCTCCTGGCGCAGTGCCTCCTGCCCCGCCACCAACTGCTCCTGAAGCCACCGCCAC
CAACGGTCTTCAGGACACCGAAACCATGCAGGTCGACCCACCTCGTGCTTCACTGAGCGG
CCCACCACTACCACCTGAGGAGACGCTCATCGAGGAGGCGATCCGGCTGACCCGGGGCCG
GCTCAGGAGGCGCTTGGCTGGGGGATCTGGACCACCGCAAAATTAGCGTCGATCAAGATT
TCCATCTCACGCGAATTGCACCACACTGGTCTGGTTCTTGGTGATTGACTGAGAAGAGGG
GGAATGCTGAGTTGGTTGAACAGAGTTTGGGTTTCCTCGCATGCGTTCTCCGTTGTACGA
ACTGGAACCGGTTTGGTCTCGAATTGTGAATAGTATCCCAGAAACAGAAGTGGATGATCA
ATTCAATTCACAGTGTAGCGCTAGGAAATATGGTTGGGAACCATCTTCTGCAAGACGCGA
AGGCGCGACATGTCATGAGCATTTAGCAACGATGATACTACTGGTCACAGTAGTGTAGTC
TGGAATCCAAATGCGAAGAACAAAAAAGAACAGCGCCATGTATGTGCTGCGTACATGTAG
TTAACGACTACTATGCAATTAGTCCTTATATGCAATCAGCTATACTCCTGATTTGTTAGA
TCATAATTCAATCATATATCACAATTAACTTTT