Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d053886_T007
CDS Infomation	cds chromosome:B73_RefGen_v4:4:242976108:242981375:1 gene:Zm00001d053886 gene_biotype:protein_coding transcript_biotype:protein_coding description:L-arabinokinase
Sequence	ATGAATGGAAGTGATGAGTCATCGTTCGAGGACTTTGAGATACTCCATGGTGACATGCAA GGCTTAACTGATACTATGTCCTTTTTGAAGAGTTTATCAGGGCTTGTTGGAAATGACTTA AGAAGCCCTGAGAAGCAAACTCGAGAGAGGGCTGCTGCTTCTGTGCTCTTTGACTGGGAG GAGGAAATATATGTTGCAAGAGCACCTGGGCGATTAGACGTTATGGGTGGTATCGCAGAT TACTCTGGAAGTCTTGTATTGCAGATGCCCATCCGAGAGGCATGCCATGTTGCTGTTCAG AGAAGTGACCCTACCAAACAGAAGCAATGGAAGCATACACAGGCTAGACAACTAGCAAAT GGAGGAGCAGTACCAGTGTTACAAATTGTATCCTTTGGTTCTGAATTAAGTAATCGTGCA CCTACGTTTGACATGGACCTTTCTGATTTTATGGATGGCGACAAACCAATATCTTATGAT AATGTGAAGGAATACTTTTCTCGGGATCCATCCCAAAAATGGGCTGCCTATGTTGCTGGA ACTATTTTTGTATTGATGGCTGAACTAGGGGTGCGCTTTAAAGACAGCATGAGCATTTTG GTTTCTTCATCTGTCCCTGAAGGCAAAGGTGTCTCCTCTTCTGCATCTGTGGAGGTTGCT TCTATGTCTGCTATCGCCGCTGCCTATGGTTTAAACATTGCTCCAAGGGATCTTGCTTTG CTCTGTCAAAAGGTTGAGAATCGTGTCGTCGGAGCTCCTTGTGGAGTAATGGACCAAATG ACATCTGCTTGTGGAGAAGCTAACAAACTCCTAGCAATGGTTTGCCAGCCTGCAGAAGTG AAGGAGTTGGTTAACATTCCAACTCATATAAGATTTTGGGGTCTTGACTCTGGGATACGT CATAGTGTTGGTGGGACTGATTATGGGTCTGTAAGAGTAGGCACTTACATGGGCCGCAAG ATGATCAAGTGTGCTGCATCCAACCTACTTTCAGAATTGTTGCTCTCGTGTACGTCTACG CAACCAGGCGACTCAAGTCCCGACGAATATGAAGGACATGGCGTCGACCTCCTGAAATCT GAAGCGTCAATGGAGTATCTATGCAACTTACCACCACATAGGTATGAAGCTGTTTTCGCG AAAGAAATTCCGGAGACGATCACTGGCGATGCGTTTTTAGAGAAGTATGGAGACCACAAC GATGCGGTAACAGAAGTTGACCCAAAGCGGTCTTACTGTGTCAAGGCTCCTACTAGACAT CCCATATACGAGAACTTCCGAGTCGAGGCCTTCAAAGCGTTGCTAACAGCTGCCAAAACA GACGAGCAGCTCTCAGCCCTTGGAGAGCTGATGTTCCAGTGCCACTACAGCTACAACGCT TGCGGGCTCGGCTCTGACGGCACAGACAGGCTAGTGAATCTAGTTCAAGAAATCCGGCAC AGGAAGAGCTCGCGCGCCGGAGGGCCCAGCCTGTTCGGCGCGAAGATCACCGGCGGAGGG TCCGGCGGCTCGGTCTGCGTGATGGGGAAGAACTGCCTGAAAAGCAGCGAGGAGATCCTC GAGATCCAGAAGAGGTACAAAGCGGCGACTGGGTACCTCCCGACTGTTTTCGACGGCTCG TCTCCCGGCGCCGGCAAGTTTGGGTACCTGAAGATTCGGCGCCGGTCCACGTCGCCGTCT GATTGA

Peptide Sequence

PEP ID	Zm00001d053886_P007
PEP Infomation	pep chromosome:B73_RefGen_v4:4:242976108:242981375:1 gene:Zm00001d053886 transcript:Zm00001d053886_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:L-arabinokinase
Sequence	MNGSDESSFEDFEILHGDMQGLTDTMSFLKSLSGLVGNDLRSPEKQTRERAAASVLFDWE EEIYVARAPGRLDVMGGIADYSGSLVLQMPIREACHVAVQRSDPTKQKQWKHTQARQLAN GGAVPVLQIVSFGSELSNRAPTFDMDLSDFMDGDKPISYDNVKEYFSRDPSQKWAAYVAG TIFVLMAELGVRFKDSMSILVSSSVPEGKGVSSSASVEVASMSAIAAAYGLNIAPRDLAL LCQKVENRVVGAPCGVMDQMTSACGEANKLLAMVCQPAEVKELVNIPTHIRFWGLDSGIR HSVGGTDYGSVRVGTYMGRKMIKCAASNLLSELLLSCTSTQPGDSSPDEYEGHGVDLLKS EASMEYLCNLPPHRYEAVFAKEIPETITGDAFLEKYGDHNDAVTEVDPKRSYCVKAPTRH PIYENFRVEAFKALLTAAKTDEQLSALGELMFQCHYSYNACGLGSDGTDRLVNLVQEIRH RKSSRAGGPSLFGAKITGGGSGGSVCVMGKNCLKSSEEILEIQKRYKAATGYLPTVFDGS SPGAGKFGYLKIRRRSTSPSD

Transcript Sequence

Transcript ID	Zm00001d053886_T007
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:242976108:242981375:1 gene:Zm00001d053886 gene_biotype:protein_coding transcript_biotype:protein_coding description:L-arabinokinase
Sequence	AGGTAGCTGCACATATCCTCCAAGATACTGCTGTTGGGAAGAAGTATATTTCTGGAAAGT TGAGCGGAGCAAGACGGTTGCGTGATGCCATTGTGCTTGGCTATCAGCTTCAAAGGGCTC CTGGGAGAGATGTAGGAATTCCTTACTGGTATTCTCACTCTGAGAAAGAAATTAGTGTTG GCCCAGCGCCCACATCTCATGATATGAATGGAAGTGATGAGTCATCGTTCGAGGACTTTG AGATACTCCATGGTGACATGCAAGGCTTAACTGATACTATGTCCTTTTTGAAGAGTTTAT CAGGGCTTGTTGGAAATGACTTAAGAAGCCCTGAGAAGCAAACTCGAGAGAGGGCTGCTG CTTCTGTGCTCTTTGACTGGGAGGAGGAAATATATGTTGCAAGAGCACCTGGGCGATTAG ACGTTATGGGTGGTATCGCAGATTACTCTGGAAGTCTTGTATTGCAGATGCCCATCCGAG AGGCATGCCATGTTGCTGTTCAGAGAAGTGACCCTACCAAACAGAAGCAATGGAAGCATA CACAGGCTAGACAACTAGCAAATGGAGGAGCAGTACCAGTGTTACAAATTGTATCCTTTG GTTCTGAATTAAGTAATCGTGCACCTACGTTTGACATGGACCTTTCTGATTTTATGGATG GCGACAAACCAATATCTTATGATAATGTGAAGGAATACTTTTCTCGGGATCCATCCCAAA AATGGGCTGCCTATGTTGCTGGAACTATTTTTGTATTGATGGCTGAACTAGGGGTGCGCT TTAAAGACAGCATGAGCATTTTGGTTTCTTCATCTGTCCCTGAAGGCAAAGGTGTCTCCT CTTCTGCATCTGTGGAGGTTGCTTCTATGTCTGCTATCGCCGCTGCCTATGGTTTAAACA TTGCTCCAAGGGATCTTGCTTTGCTCTGTCAAAAGGTTGAGAATCGTGTCGTCGGAGCTC CTTGTGGAGTAATGGACCAAATGACATCTGCTTGTGGAGAAGCTAACAAACTCCTAGCAA TGGTTTGCCAGCCTGCAGAAGTGAAGGAGTTGGTTAACATTCCAACTCATATAAGATTTT GGGGTCTTGACTCTGGGATACGTCATAGTGTTGGTGGGACTGATTATGGGTCTGTAAGAG TAGGCACTTACATGGGCCGCAAGATGATCAAGTGTGCTGCATCCAACCTACTTTCAGAAT TGTTGCTCTCGTGTACGTCTACGCAACCAGGCGACTCAAGTCCCGACGAATATGAAGGAC ATGGCGTCGACCTCCTGAAATCTGAAGCGTCAATGGAGTATCTATGCAACTTACCACCAC ATAGGTATGAAGCTGTTTTCGCGAAAGAAATTCCGGAGACGATCACTGGCGATGCGTTTT TAGAGAAGTATGGAGACCACAACGATGCGGTAACAGAAGTTGACCCAAAGCGGTCTTACT GTGTCAAGGCTCCTACTAGACATCCCATATACGAGAACTTCCGAGTCGAGGCCTTCAAAG CGTTGCTAACAGCTGCCAAAACAGACGAGCAGCTCTCAGCCCTTGGAGAGCTGATGTTCC AGTGCCACTACAGCTACAACGCTTGCGGGCTCGGCTCTGACGGCACAGACAGGCTAGTGA ATCTAGTTCAAGAAATCCGGCACAGGAAGAGCTCGCGCGCCGGAGGGCCCAGCCTGTTCG GCGCGAAGATCACCGGCGGAGGGTCCGGCGGCTCGGTCTGCGTGATGGGGAAGAACTGCC TGAAAAGCAGCGAGGAGATCCTCGAGATCCAGAAGAGGTACAAAGCGGCGACTGGGTACC TCCCGACTGTTTTCGACGGCTCGTCTCCCGGCGCCGGCAAGTTTGGGTACCTGAAGATTC GGCGCCGGTCCACGTCGCCGTCTGATTGAAGAAGAAGAAGAAGGAAGAGCTCTGCTCGGT CGGCCGTACCCTCACGGTCGTATTGATCGTATCGTATCCCACGCACTACGCCCAAGATGC CAATAAATGGGACAGATTGATCGGCAATAATAATACTAGTAGCCATAGAAAACTCTAGTG ATAAGCTGCGAAACAACTTGTATGTCGAAGAAAATATTTGAAACCATGGTATCTTTGTGG TCGATATCTGAAGTGAGATGATGTGAATG