Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053872_T046
CDS Infomation

cds chromosome:B73_RefGen_v4:4:242636055:242643611:1 gene:Zm00001d053872 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-directed RNA polymerase V subunit 1
Sequence

ATGCCAATCGATGGAAAGCTACATAAGGTTCCATGTGTGCAGTTTGCTTTTTCTGATGAC
ATTGTACTATCCGAGTCTATTGAGAGAGCAGTGAATGTGATAGCTGACTCTGTCTGCTCA
GTGCTTTTAGATACAATTATTAAAGGTGATCCTCGAATTCAAGCGGCAAAAGTTATCTGG
GTTGAATCAGATGCAGCATCTTGGGTAAAACACACACGGAAGGTATCAAAGGGCGAGTCA
GCATTAGAAATCATTGTTGAAAAAGATGATGCTGTAAGCAATGGTGATGCCTGGAGAACA
GCAATTGATGCCTGCTTACCTGTACTTAACCTCATTGACACACGGAGGTCTATTCCATAT
GGCATTCAACAAGTGAGGGAACTTATTGGCATCTCATGTGCCTTCGATCAAGTGGTGCAG
CGGCTTTCAACGACTGTAAAAATGGTTAATAAAGGAGTTCTTAAAGACCATTTGATACTT
GTGGCAAACAGCATGACATGCACTGGAAATTTGATTGGGTTCAACATTGCTGGCTACAAG
GCAACTTTCCGTTCATTAAAAGTTCAAGTGCCTTTCACCGAGTCCACTTTGTTTACCCCT
ATGAAATGCTTTGAGAAGGCTGCAGAAAAATGTGATTCTGATTCATTGGGATGTGTGGTC
TCATCGTCCGCATGGGGCAAGCATGCAGCAGTTGGTACTGGGTCATCTTTTCAAATTCTC
TGGAATGAAAATCAGCTGAAAAGCAACAAGGAGTATGGGGATGGGTTGTACGATTTCTTA
GCATTGGTCAGGACTGACCAAGAAAAGACAGACTACATGTTCTTGGACGATGTTGACTAT
CTTGTAGAGGAGAATGCAGCAGATGACATGTGCTTATCTCCTGAGCCAGATGGGACCCTT
GGTAAGCCTACCTTTGAGGATAATTTTGAAGAGCAAAATATTCAGAAAGGCAGCTCATGG
GAAATTGGCATAACAACGAACTCAAGTTGGGAACAGAATGCTAGTGTTGCGAATGATTCT
GGTGACTGGGGAGGCTGGAGTAGTGGAGGTGGAGCTGCTGCAAAGCCAGCAGATCAAGAT
AATTCATGGGAAGTGCATGCTAAGGTGCAGGACAATTCCACCACTGATTGGGGAGGCTGG
AGCGTTGAGAAGCCAACAGGTGAGGCAACTGTATCTGGAGAACCAGCTGAAACAGATACT
TGGGCTGATAAGGGTGCTAAAATGGAATCAGATGCAGGTGATGGTAATTGGGAAAAGTCC
AGCACTCCTGAGGCATCAAAGAAAAATGACTCATCAGAAAATACATGGGACAAAAGAAAA
GGAGATGGAGGTGATGGTGCGTGGGGGAACAGGTCTGATGATGGCCATGGCAATTGGGAG
CATCCCAGCAATTGGAATGGGCAGAGTTTGGATGTAGATCAGGACACATGGGGAAACGCC
AGGGGAAAAAAGAAGGCAGATGGTAACTACTGTCAATGGGAGGAGCAGCCAAGCAATTAC
AAACAGAAGAAGACAAATGCTGATCATGATTCCTCCTATAACAATGTGATGCCGTCATCA
GAAATTGCTTGGAATGCTGGAGATGGAACTGGAAGACCAAATGCCAAGTCTAATGCAGAA
TCCAGTTGGGGTGAGGAAGATAAGATGGAGTCTGACGATCATCCGAAAGTCCCAAAAGAA
TCAGACACATGGAATACAGGGAGATCAAATGAAAGTCCATGGGATAACACTGATGCACTG
CAGGATTCCTGGGTTAAGAGCGCAGCTCGCAATAACAACACTCAGGATGGTTCATGGGAT
AAAGTAGTATCTATGAAGGATCTTGATTCACTCCAAGATTCATGGAGTAAGGCGACAATC
CAGACGAATGATGCACAGAATGATTCTTGGGACAATGTGGCAAAAAATGCCCCGGATTCT
GCCGCAGAAGACTCCTGGGGGGCTGCAACACCAGCGGAGACAACTGATTCTGGTAACAAG
GAGTGGAAATCAGATGGATGGGGGGCAAAGTCTGGTAACTGGAGCAGCCAAAGAAATAAT
CCTGGGAGACCCCCAAGGAGACCAGATGAGAGGGGTCCACCTCCACCAAGACAACGGTTC
GAACTAACAGTTGCGGAGAAGAACATTCTTCTAGAAGTTGAACCTATTAAATTACGTGTG
AGAAGCATCTTCCGTGAAGCATGTGACGGTGTTAGACTTAATCCAGAAGACGAGAAGTTT
ATCCTGGAGAAAGTTCTTGAGCACCACCCGGAAAAGCAATCCAAGGTGTCTGGTGAAATC
GACTACCTAACGGTCAACAAGCACCAGACTTTCCAGGACACTCGGTGCTTTTTCGTGGTC
TCCACAGATGGATCCCAGGCAGATTTCTCCTACCTGAAGTGCCTGGAGAACTTTGTGAGG
AAGAGCTACACGGAGGACGCCGACACATTCTGCATGAAGTACTTAAGGCCCCGTCGCAGG
CAGGCACCACCAGCTGATGTTGGGACAGCATCAGGCGCCCCGGATGAGGTTCCACCGTCA
ACCGCAGCTGAGACAGAGCAAGGCACTCCTCCAGCCCCTCAGGCAGAGGTTCCACAAGAG
ACTTGGGGTTCTCCCGCAGTGCCTCTGGAAGGAGGAACTCACATCGCCGGACCAGACTCA
ACAGGCGACGCTGTGATCCTAGGGGAGCAGCACGATCTGACTCCGGCTTCTCCAGCTGTG
GCACCACAAGTGGCTTCTGAGCCAGACACAACCGACGGCACGGGGCTTCTAGGAAAGGCT
CCGCAAGCTGACTGGGGACCCAGATTCGACGCTGACTGA

Peptide Sequence

PEP ID

Zm00001d053872_P046
PEP Infomation

pep chromosome:B73_RefGen_v4:4:242636055:242643611:1 gene:Zm00001d053872 transcript:Zm00001d053872_T046 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-directed RNA polymerase V subunit 1
Sequence

MPIDGKLHKVPCVQFAFSDDIVLSESIERAVNVIADSVCSVLLDTIIKGDPRIQAAKVIW
VESDAASWVKHTRKVSKGESALEIIVEKDDAVSNGDAWRTAIDACLPVLNLIDTRRSIPY
GIQQVRELIGISCAFDQVVQRLSTTVKMVNKGVLKDHLILVANSMTCTGNLIGFNIAGYK
ATFRSLKVQVPFTESTLFTPMKCFEKAAEKCDSDSLGCVVSSSAWGKHAAVGTGSSFQIL
WNENQLKSNKEYGDGLYDFLALVRTDQEKTDYMFLDDVDYLVEENAADDMCLSPEPDGTL
GKPTFEDNFEEQNIQKGSSWEIGITTNSSWEQNASVANDSGDWGGWSSGGGAAAKPADQD
NSWEVHAKVQDNSTTDWGGWSVEKPTGEATVSGEPAETDTWADKGAKMESDAGDGNWEKS
STPEASKKNDSSENTWDKRKGDGGDGAWGNRSDDGHGNWEHPSNWNGQSLDVDQDTWGNA
RGKKKADGNYCQWEEQPSNYKQKKTNADHDSSYNNVMPSSEIAWNAGDGTGRPNAKSNAE
SSWGEEDKMESDDHPKVPKESDTWNTGRSNESPWDNTDALQDSWVKSAARNNNTQDGSWD
KVVSMKDLDSLQDSWSKATIQTNDAQNDSWDNVAKNAPDSAAEDSWGAATPAETTDSGNK
EWKSDGWGAKSGNWSSQRNNPGRPPRRPDERGPPPPRQRFELTVAEKNILLEVEPIKLRV
RSIFREACDGVRLNPEDEKFILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVV
STDGSQADFSYLKCLENFVRKSYTEDADTFCMKYLRPRRRQAPPADVGTASGAPDEVPPS
TAAETEQGTPPAPQAEVPQETWGSPAVPLEGGTHIAGPDSTGDAVILGEQHDLTPASPAV
APQVASEPDTTDGTGLLGKAPQADWGPRFDAD

Transcript Sequence

Transcript ID

Zm00001d053872_T046
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:242636055:242643611:1 gene:Zm00001d053872 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-directed RNA polymerase V subunit 1
Sequence

GGAAATTCTTCAGACAAGAACTTCCTATAAAAATGATGTGAAAGATCGGAAAGTGGTCCT
ATTCCTGAATGATTGCTCTTGCGCAAAAAAATTCTGCAAGGAAAGGGCTGCACTTGCAGT
ACAAAGTTGTCTTAAGAGAGTCACACTTGGGGATTGTGCTACTGATATCTGCATTGAGCA
TCAGAAGCAAATAAATTTAGATGGAACATCTGAAGCTGCCCCAACTCTTGTAGGACATAT
TCACCTTGACAAGGGGCATTTAGAAAGGATAAACATTAGTACTCAAGACATTCTCCAAAA
ATGTCAAGAAGTTTCTGGGAGATTTGGAAAGAAGAAAGGACACCTTTGCCACATCTTTAA
AAAAATTACTTTTGCTACTTGTGATTGTTCATTCACTCAGATGCCAATCGATGGAAAGCT
ACATAAGGTTCCATGTGTGCAGTTTGCTTTTTCTGATGACATTGTACTATCCGAGTCTAT
TGAGAGAGCAGTGAATGTGATAGCTGACTCTGTCTGCTCAGTGCTTTTAGATACAATTAT
TAAAGGTGATCCTCGAATTCAAGCGGCAAAAGTTATCTGGGTTGAATCAGATGCAGCATC
TTGGGTAAAACACACACGGAAGGTATCAAAGGGCGAGTCAGCATTAGAAATCATTGTTGA
AAAAGATGATGCTGTAAGCAATGGTGATGCCTGGAGAACAGCAATTGATGCCTGCTTACC
TGTACTTAACCTCATTGACACACGGAGGTCTATTCCATATGGCATTCAACAAGTGAGGGA
ACTTATTGGCATCTCATGTGCCTTCGATCAAGTGGTGCAGCGGCTTTCAACGACTGTAAA
AATGGTTAATAAAGGAGTTCTTAAAGACCATTTGATACTTGTGGCAAACAGCATGACATG
CACTGGAAATTTGATTGGGTTCAACATTGCTGGCTACAAGGCAACTTTCCGTTCATTAAA
AGTTCAAGTGCCTTTCACCGAGTCCACTTTGTTTACCCCTATGAAATGCTTTGAGAAGGC
TGCAGAAAAATGTGATTCTGATTCATTGGGATGTGTGGTCTCATCGTCCGCATGGGGCAA
GCATGCAGCAGTTGGTACTGGGTCATCTTTTCAAATTCTCTGGAATGAAAATCAGCTGAA
AAGCAACAAGGAGTATGGGGATGGGTTGTACGATTTCTTAGCATTGGTCAGGACTGACCA
AGAAAAGACAGACTACATGTTCTTGGACGATGTTGACTATCTTGTAGAGGAGAATGCAGC
AGATGACATGTGCTTATCTCCTGAGCCAGATGGGACCCTTGGTAAGCCTACCTTTGAGGA
TAATTTTGAAGAGCAAAATATTCAGAAAGGCAGCTCATGGGAAATTGGCATAACAACGAA
CTCAAGTTGGGAACAGAATGCTAGTGTTGCGAATGATTCTGGTGACTGGGGAGGCTGGAG
TAGTGGAGGTGGAGCTGCTGCAAAGCCAGCAGATCAAGATAATTCATGGGAAGTGCATGC
TAAGGTGCAGGACAATTCCACCACTGATTGGGGAGGCTGGAGCGTTGAGAAGCCAACAGG
TGAGGCAACTGTATCTGGAGAACCAGCTGAAACAGATACTTGGGCTGATAAGGGTGCTAA
AATGGAATCAGATGCAGGTGATGGTAATTGGGAAAAGTCCAGCACTCCTGAGGCATCAAA
GAAAAATGACTCATCAGAAAATACATGGGACAAAAGAAAAGGAGATGGAGGTGATGGTGC
GTGGGGGAACAGGTCTGATGATGGCCATGGCAATTGGGAGCATCCCAGCAATTGGAATGG
GCAGAGTTTGGATGTAGATCAGGACACATGGGGAAACGCCAGGGGAAAAAAGAAGGCAGA
TGGTAACTACTGTCAATGGGAGGAGCAGCCAAGCAATTACAAACAGAAGAAGACAAATGC
TGATCATGATTCCTCCTATAACAATGTGATGCCGTCATCAGAAATTGCTTGGAATGCTGG
AGATGGAACTGGAAGACCAAATGCCAAGTCTAATGCAGAATCCAGTTGGGGTGAGGAAGA
TAAGATGGAGTCTGACGATCATCCGAAAGTCCCAAAAGAATCAGACACATGGAATACAGG
GAGATCAAATGAAAGTCCATGGGATAACACTGATGCACTGCAGGATTCCTGGGTTAAGAG
CGCAGCTCGCAATAACAACACTCAGGATGGTTCATGGGATAAAGTAGTATCTATGAAGGA
TCTTGATTCACTCCAAGATTCATGGAGTAAGGCGACAATCCAGACGAATGATGCACAGAA
TGATTCTTGGGACAATGTGGCAAAAAATGCCCCGGATTCTGCCGCAGAAGACTCCTGGGG
GGCTGCAACACCAGCGGAGACAACTGATTCTGGTAACAAGGAGTGGAAATCAGATGGATG
GGGGGCAAAGTCTGGTAACTGGAGCAGCCAAAGAAATAATCCTGGGAGACCCCCAAGGAG
ACCAGATGAGAGGGGTCCACCTCCACCAAGACAACGGTTCGAACTAACAGTTGCGGAGAA
GAACATTCTTCTAGAAGTTGAACCTATTAAATTACGTGTGAGAAGCATCTTCCGTGAAGC
ATGTGACGGTGTTAGACTTAATCCAGAAGACGAGAAGTTTATCCTGGAGAAAGTTCTTGA
GCACCACCCGGAAAAGCAATCCAAGGTGTCTGGTGAAATCGACTACCTAACGGTCAACAA
GCACCAGACTTTCCAGGACACTCGGTGCTTTTTCGTGGTCTCCACAGATGGATCCCAGGC
AGATTTCTCCTACCTGAAGTGCCTGGAGAACTTTGTGAGGAAGAGCTACACGGAGGACGC
CGACACATTCTGCATGAAGTACTTAAGGCCCCGTCGCAGGCAGGCACCACCAGCTGATGT
TGGGACAGCATCAGGCGCCCCGGATGAGGTTCCACCGTCAACCGCAGCTGAGACAGAGCA
AGGCACTCCTCCAGCCCCTCAGGCAGAGGTTCCACAAGAGACTTGGGGTTCTCCCGCAGT
GCCTCTGGAAGGAGGAACTCACATCGCCGGACCAGACTCAACAGGCGACGCTGTGATCCT
AGGGGAGCAGCACGATCTGACTCCGGCTTCTCCAGCTGTGGCACCACAAGTGGCTTCTGA
GCCAGACACAACCGACGGCACGGGGCTTCTAGGAAAGGCTCCGCAAGCTGACTGGGGACC
CAGATTCGACGCTGACTGATATTTAGGCTGTGTGAAGCTGCCGCATGTAAAAGCCAGACC
TGTGCTCTGAGCAAGGGAGCATTCCCTTGCTAAGTCGTCAGTTAACTCCCCTTGACTTCA
TCTGGAGAGGTGGACAGGTAGTAGCGGCAAACATTCTAGCCCTTAGCGGCCGCTTGCTCG
TCCTCGTCCGTTTCGTCTCGCCCTGATGGGAACCATGTAAATCCTTGGGAACAAAGCTAC
CCCCTGCTGCCTTTACCGTATCTAGTTGGACCTTCCCCACTGTTGGAATCTGTGAGTCCG
TCTGCTGTTAAATTTTTGATGGTTTCTGGGCTGTGGCTTGCCAGCGGTGATGCCAAACTC
TGGAAACCTAGGGATTTGTTTGGTGCGGTCGTTTGGTTGTCAGGTCGATC