Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053857_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:4:242295531:242298482:-1 gene:Zm00001d053857 gene_biotype:protein_coding transcript_biotype:protein_coding description:T-complex protein 1 subunit eta
Sequence

ATGTCGGCGATGATGCAACCGCAGATCATCCTGCTCAAGGAGGGCACGGACACGTCGCAG
GGGCGCGCTCAGGTGGTGAGCAATATCAACGCGTGCACGGCGGTGGGCGACACCGTGCGG
ACCACGCTGGGGCCTCGGGGGATGGACAAGCTCATCCACGACGACAAGGGCGGAGTCACC
ATCTCCAACGACGGCGCCACCATCATGCGCCTCCTCGACATCGTGCACCCCGCCGCCAAG
ATCCTTGTCGACATCGCCAAGTCGCAGGACTCCGAGGTCGGCGATGGGACAACTACTGTG
GTGCTTCTAGCTGCAGAATTCTTAAAGGAAGCAAAACCTTATATCGAGGACGGGGTGCAC
CCCCACAGTCTAATTCGCAGTTATAGAACTGCAGGCAATATGGCAATCCAAAGGGTTAAA
GAGCTGGCAGTTAGCATAGAAGGAAAAAGCCTTGAAGAGAAGAAATCACTGCTAGCCAAG
TGCGCTGCTACAACACTCTCTTCAAAACTTATAGGTGGTGAAAAAGAATTCTTTGCTTCT
ATGGTTGTGGATGCTGTCCTTGCCATTGGCAATGATGACAGGCTTAATCTTATTGGGATT
AAAAAGGTTCCTGGAGGTACCATGAGAGACTCTTTTTTGGTGAATGGTGTTGCGTTCAAG
AAGACGTTTTCATATGCAGGATTTGAGCAACAACCAAAGAAGTTCCTTAATCCAAAGATT
CTTTTGTTAAACATTGAACTAGAATTGAAATCTGAGAAGGAAAATGCAGAGATCAGATTG
TCTGACCCTCTGCAATACCAATCAATTGTTGATGCTGAGTGGAACATTATTTATGACAAA
CTGGATAAATGTGTGAAAAGTGGAGCAAAGATAGTTCTGTCTCGGCTAGCTATTGGTGAT
CTTGGAACACAGTATTTTGCAGATCGAGACATTTTCTGTGCTGGCCGTGTCACTGAAGAA
GATTTGCAACGTGTTGCTGCAGCAACTGGTGGAACTGTTCAAACTTCTGTAAATAATGTC
ATCAATGATGTACTCGGTTCCTGTGAGGTATTC

Peptide Sequence

PEP ID

Zm00001d053857_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:4:242295531:242298482:-1 gene:Zm00001d053857 transcript:Zm00001d053857_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:T-complex protein 1 subunit eta
Sequence

MSAMMQPQIILLKEGTDTSQGRAQVVSNINACTAVGDTVRTTLGPRGMDKLIHDDKGGVT
ISNDGATIMRLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPYIEDGVH
PHSLIRSYRTAGNMAIQRVKELAVSIEGKSLEEKKSLLAKCAATTLSSKLIGGEKEFFAS
MVVDAVLAIGNDDRLNLIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKI
LLLNIELELKSEKENAEIRLSDPLQYQSIVDAEWNIIYDKLDKCVKSGAKIVLSRLAIGD
LGTQYFADRDIFCAGRVTEEDLQRVAAATGGTVQTSVNNVINDVLGSCEVF

Transcript Sequence

Transcript ID

Zm00001d053857_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:242295531:242298482:-1 gene:Zm00001d053857 gene_biotype:protein_coding transcript_biotype:protein_coding description:T-complex protein 1 subunit eta
Sequence

GGCGCAGCAGCAGACGGACGCCAGGTTTTTTTCCTTTTAGACCGCAACCTCAAAACCCTA
GCTTGTCCCTCCTGCTCCCAGATCTCTTCCACTCGGCCACTCCCTAGCACATCAAACCCT
AGCTCCGCCCAGCCCCCAACCATGTCGGCGATGATGCAACCGCAGATCATCCTGCTCAAG
GAGGGCACGGACACGTCGCAGGGGCGCGCTCAGGTGGTGAGCAATATCAACGCGTGCACG
GCGGTGGGCGACACCGTGCGGACCACGCTGGGGCCTCGGGGGATGGACAAGCTCATCCAC
GACGACAAGGGCGGAGTCACCATCTCCAACGACGGCGCCACCATCATGCGCCTCCTCGAC
ATCGTGCACCCCGCCGCCAAGATCCTTGTCGACATCGCCAAGTCGCAGGACTCCGAGGTC
GGCGATGGGACAACTACTGTGGTGCTTCTAGCTGCAGAATTCTTAAAGGAAGCAAAACCT
TATATCGAGGACGGGGTGCACCCCCACAGTCTAATTCGCAGTTATAGAACTGCAGGCAAT
ATGGCAATCCAAAGGGTTAAAGAGCTGGCAGTTAGCATAGAAGGAAAAAGCCTTGAAGAG
AAGAAATCACTGCTAGCCAAGTGCGCTGCTACAACACTCTCTTCAAAACTTATAGGTGGT
GAAAAAGAATTCTTTGCTTCTATGGTTGTGGATGCTGTCCTTGCCATTGGCAATGATGAC
AGGCTTAATCTTATTGGGATTAAAAAGGTTCCTGGAGGTACCATGAGAGACTCTTTTTTG
GTGAATGGTGTTGCGTTCAAGAAGACGTTTTCATATGCAGGATTTGAGCAACAACCAAAG
AAGTTCCTTAATCCAAAGATTCTTTTGTTAAACATTGAACTAGAATTGAAATCTGAGAAG
GAAAATGCAGAGATCAGATTGTCTGACCCTCTGCAATACCAATCAATTGTTGATGCTGAG
TGGAACATTATTTATGACAAACTGGATAAATGTGTGAAAAGTGGAGCAAAGATAGTTCTG
TCTCGGCTAGCTATTGGTGATCTTGGAACACAGTATTTTGCAGATCGAGACATTTTCTGT
GCTGGCCGTGTCACTGAAGAAGATTTGCAACGTGTTGCTGCAGCAACTGGTGGAACTGTT
CAAACTTCTGTAAATAATGTCATCAATGATGTACTCGGTTCCTGTGAGGTATTCG