Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053855_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:242281659:242285564:1 gene:Zm00001d053855 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:WHIRLY-transcription factor 2 description:DNA binding protein isoform 1%3B DNA binding protein isoform 2

Sequence

ATGATAGCCCATTTCTTAGGTTTCGGCGCCTCAGTGGGACGAAACTCACTGGCTCCCTCT
CCTCCCCCAGTCCGCGGCGCTCGCTCCGTTCACCTCGGCCGCGGCGACCTTCGAGGCGAC
GAGACGATGCTGCGGCTCTCCCGCTTCCTCCCCTCCGCCTGCAGGAGGGGTTTTGATCTA
AAAGAATCTCTTTGGAGTGGTTCATTGACATTCCAACAAGCTGTTTCCACTGCAGCAACA
AATCTTGATGGGAACTTGTCTGGCAAAAAGTTTGCAAGTTATACCGTGTTCAAGGGAAAG
GCTGCACTTTCTATACATCCTATACTGCCAAGTTTCAGCAAATTAGAATCCGGAGGATCT
CGAGTGAGCAAAAATGGATCAGTAATGCTGACCTTCTTTCCTGCTGTTGGACAAAGGAAG
TATGACTATACAAAGAAACAGCTCTTTGCTCTGTCACCTACTGAAGTTGGAAGCCTGATA
AGTCTTGGGCCTGCTGAATCCTGTGAATTTTTCCATGACCCATCCATGAAATCAAGTAAT
GAAGGAACGGTGAAAAAATCGCTGTCGATCACTCCACTTGGCAGTGACAGTGGATACTTT
GTTAATATAACCGTTGTGAACAGTGCAGAGAGGACTAATGATCGTCTTTCAGTCCCTATC
ACAAAAGCTGAGTTTGCTGTGATCCGCACAACTCTGAGTTTTGCATTGCCACATATTATG
GGTTGGGACCAGGCTTTAACCAATCACCATCCAGCTCCAGCTCCTCCAGCTAGCAGCAGG
CCCACGGTAGAGCGTCCACACCCGGATTCCGAATGGGAGAGGTGA

Peptide Sequence

PEP ID

Zm00001d053855_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:242281659:242285564:1 gene:Zm00001d053855 transcript:Zm00001d053855_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:WHIRLY-transcription factor 2 description:DNA binding protein isoform 1%3B DNA binding protein isoform 2

Sequence

MIAHFLGFGASVGRNSLAPSPPPVRGARSVHLGRGDLRGDETMLRLSRFLPSACRRGFDL
KESLWSGSLTFQQAVSTAATNLDGNLSGKKFASYTVFKGKAALSIHPILPSFSKLESGGS
RVSKNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSN
EGTVKKSLSITPLGSDSGYFVNITVVNSAERTNDRLSVPITKAEFAVIRTTLSFALPHIM
GWDQALTNHHPAPAPPASSRPTVERPHPDSEWER

Transcript Sequence

Transcript ID

Zm00001d053855_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:242281659:242285564:1 gene:Zm00001d053855 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:WHIRLY-transcription factor 2 description:DNA binding protein isoform 1%3B DNA binding protein isoform 2

Sequence

AGCGTATTCAAACACGCCCGCTAGCATGATAGCCCATTTCTTAGGTTTCGGCGCCTCAGT
GGGACGAAACTCACTGGCTCCCTCTCCTCCCCCAGTCCGCGGCGCTCGCTCCGTTCACCT
CGGCCGCGGCGACCTTCGAGGCGACGAGACGATGCTGCGGCTCTCCCGCTTCCTCCCCTC
CGCCTGCAGGAGGGGTTTTGATCTAAAAGAATCTCTTTGGAGTGGTTCATTGACATTCCA
ACAAGCTGTTTCCACTGCAGCAACAAATCTTGATGGGAACTTGTCTGGCAAAAAGTTTGC
AAGTTATACCGTGTTCAAGGGAAAGGCTGCACTTTCTATACATCCTATACTGCCAAGTTT
CAGCAAATTAGAATCCGGAGGATCTCGAGTGAGCAAAAATGGATCAGTAATGCTGACCTT
CTTTCCTGCTGTTGGACAAAGGAAGTATGACTATACAAAGAAACAGCTCTTTGCTCTGTC
ACCTACTGAAGTTGGAAGCCTGATAAGTCTTGGGCCTGCTGAATCCTGTGAATTTTTCCA
TGACCCATCCATGAAATCAAGTAATGAAGGAACGGTGAAAAAATCGCTGTCGATCACTCC
ACTTGGCAGTGACAGTGGATACTTTGTTAATATAACCGTTGTGAACAGTGCAGAGAGGAC
TAATGATCGTCTTTCAGTCCCTATCACAAAAGCTGAGTTTGCTGTGATCCGCACAACTCT
GAGTTTTGCATTGCCACATATTATGGGTTGGGACCAGGCTTTAACCAATCACCATCCAGC
TCCAGCTCCTCCAGCTAGCAGCAGGCCCACGGTAGAGCGTCCACACCCGGATTCCGAATG
GGAGAGGTGAAGCTCCCTGCTAGAGGATGGAGGCCTTTGGCTTTGGGCACCAGTACAAGT
TGCTGCTGCAAAGTATGTGTGCTTGAACAATCTCTTAGAACACTGTCTGCCGACCGCATT
AGATTTCTGGAACTTAAGGCTAGATGAAGCACGATGAACCATTGTATTTGTTCAGTGCAT
GTATAACTATATCACGCCTACTAAAGGCATATTTCTAGTCGAGTCGAGCTGTTTTACGCT
TGCTTGTCGACGATGTCTGTGCTTGGTTACGCATCGGCATTCTAC