Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053813_T041
CDS Infomation

cds chromosome:B73_RefGen_v4:4:241597975:241604208:1 gene:Zm00001d053813 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cullin-associated NEDD8-dissociated protein 1
Sequence

ATGGATATATTTAACACCTTCATTGAGCTGTTACGCCAAACTGGTAATGTTACGAAAGGA
CAAGGCGACATCGATGAGTCCAGCCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTT
GTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAGGTTGGGGCATTT
TCAGTACTGAAGGAGCTTGTGGTTGTATTACCAGACTGTCTTGCTGATCATTTCGGGTCA
CTTGTTCCTGGGATTGAGAAGGCTTTGAATGACAAGTCTTCTACCTCCAACCTGAAGATT
GAAGCCCTTGTATTAACAAGGCTTGTTATGGCTTCACATTCACCATCTGTGTTTCATCCA
TACATCAAGGCTCTTTCTGCACCTATACTGTCTGCTATCAGAGATAGATATTATAAAGTC
ACTGCTGAGGCTTTGCGGGTGTGTGGAGAGCTAGTCCGTGTCCTTCGTCCAAATCTCGAG
ACAACCTCAGTTGATTTTAAGCCATACATTGGTCCAATCTATAATGCAATACTGGGACGT
TTGGCCAATCAAGATCAGGATCAGGAGGTAAAAGAATGCGCCATATCTTGCATGAGTTTG
GTGGTCTCTACTTTTGGTGATGGTCTTGAAAGAGAATTACCAGCATGCCTTCCCATACTC
GTTGACAGGATGGGTAATGAAATTACAAGACTTACAGCTGTCAAGGCATTTTCAGTTATT
GCGAATTCACCTCTACGTATTGATCTCTCGTGTGTCCTGGATCATGTTGTTTCTGAGCTC
ACAGCTTTCCTTCGCAAGGCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAAT
TCTTTGGTTGTCACATATGGTGGTCAGATTGGCTCTTCTTCGTATGAGACAATAATCGCG
GAACTTTCAACCCTCATAAGTGACATGGATTTGCATATGACCGCTCTTGCATTGGAACTT
TGTTGCACAATAATGGTTGACAGAAAATCTATTCAAAACGTTGGTTTAGCTGTTAGAGAT
AAAGTTTTGCCTCAGGCCCTTGTTTTGATCAGGAGTGCCCTGTTGCAAGGGCAGGCACTG
CAGGCTCTTCAGAGGTTTTTTGCATCACTTGTTCAATCTGCAAATACTAGCTTTGATGCT
TTGTTGGAGTCCCTTATTTCTGCTGCTAAGCCATCACATTCAGGTAGTCTTGCTAAGCAA
GCACTGTCTTCTATTGCTAAGTGTGTTGCTGTTCTATGCTTAGCAGCTGGTGACCAGAAG
TGTGCATCTACAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT
GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAGGACCTCAGC
AATCATGTTCAAATTGAGAACATCGTCATTGAATCGTTTCAATCACCTTTTGAGGAGATT
AAGTCCGCAGCATCCTATGCACTTGGAAACATTGCTGTTGGCAACCTCTCCAAGTATTTA
CCATTTATTTTGGATCAGATTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCA
CTTAAAGAGGTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGAT
TCAAACATTGAGAAGATATTGGCATTGCTCTTCAATCACTGTGAAAGTGAGGAGGAGGGA
GTTCGGAATGTTGTTGCAGAGTGTTTAGGAAAAATTTCTCTAATTGAACCAAAAAAACTA
GTCCCTGCTTTGGAGGTACGCACGTCTAGCCCAGCAGCAAATACAAGAGCTACGGTTGCT
ATTGCTATAAAATATTCAATTGTTGAACGACCTGAGAAAATAGATGAAATCATGTACTCC
AAGATATCTACTTTCTTGATGTTGATTAAAGACAGCGATAGGCATGTGAGAAGAGCAGCA
GTTCTGGCTTTGAGCACAGCAGCGCACAACAAGCCAAATTTGATTAAAGGTCTTCTTCCA
GAGATATTACCTCTTCTATACGACCAAACTGTTATTAAGCAAGAGTTAATCAGGACAGTT
GATCTTGGGCCTTTCAAACATGTTGTAGATGATGGTCTTGAACTCAGGAAAGCTGCCTTT
GAATGTGTGGATACTTTATTGGACAGTTGTCTTGATCAAGTGAATCCATCGTCCTTCATT
GTACCTTTCCTCTTGTCTGGTTTAGGTGACCATTACGACGTGAAAATGCCTTGCCATTTG
ATTCTATCAAAGCTAGCAGACAAGTGCCCTTCCGCCGTCCTTGCTGTCCTGGACTCCATA
GTTGAACCAATCGAGAAAACTATAAGCCACAAACCCAAGGGGGATGCAGTGAAGCAGGAG
GTTGATCGGAACGAGGACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGC
ATAAGCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGCCACC
CCCGCGCTCGCCGAGAAGTACAACTCGGTGCGCGGCGAATGA

Peptide Sequence

PEP ID

Zm00001d053813_P041
PEP Infomation

pep chromosome:B73_RefGen_v4:4:241597975:241604208:1 gene:Zm00001d053813 transcript:Zm00001d053813_T041 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cullin-associated NEDD8-dissociated protein 1
Sequence

MDIFNTFIELLRQTGNVTKGQGDIDESSPRWLLKQEVPKVVKSINRQLREKSIKTKVGAF
SVLKELVVVLPDCLADHFGSLVPGIEKALNDKSSTSNLKIEALVLTRLVMASHSPSVFHP
YIKALSAPILSAIRDRYYKVTAEALRVCGELVRVLRPNLETTSVDFKPYIGPIYNAILGR
LANQDQDQEVKECAISCMSLVVSTFGDGLERELPACLPILVDRMGNEITRLTAVKAFSVI
ANSPLRIDLSCVLDHVVSELTAFLRKANRALRQATLGTLNSLVVTYGGQIGSSSYETIIA
ELSTLISDMDLHMTALALELCCTIMVDRKSIQNVGLAVRDKVLPQALVLIRSALLQGQAL
QALQRFFASLVQSANTSFDALLESLISAAKPSHSGSLAKQALSSIAKCVAVLCLAAGDQK
CASTIEMLKGILKDDSTTNSAKQHMALLCLGEIGRRKDLSNHVQIENIVIESFQSPFEEI
KSAASYALGNIAVGNLSKYLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDHTGQSELQD
SNIEKILALLFNHCESEEEGVRNVVAECLGKISLIEPKKLVPALEVRTSSPAANTRATVA
IAIKYSIVERPEKIDEIMYSKISTFLMLIKDSDRHVRRAAVLALSTAAHNKPNLIKGLLP
EILPLLYDQTVIKQELIRTVDLGPFKHVVDDGLELRKAAFECVDTLLDSCLDQVNPSSFI
VPFLLSGLGDHYDVKMPCHLILSKLADKCPSAVLAVLDSIVEPIEKTISHKPKGDAVKQE
VDRNEDMIRSALRAISSLSRISGSDYSIRFKNLMNKITATPALAEKYNSVRGE

Transcript Sequence

Transcript ID

Zm00001d053813_T041
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:241597975:241604208:1 gene:Zm00001d053813 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cullin-associated NEDD8-dissociated protein 1
Sequence

AGGCTTGTCCAAAGTTAATTGAACGATTTCGGGAAAGAGAGGAGAATGTAAAGATGGATA
TATTTAACACCTTCATTGAGCTGTTACGCCAAACTGGTAATGTTACGAAAGGACAAGGCG
ACATCGATGAGTCCAGCCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAAGT
CTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAGGTTGGGGCATTTTCAGTAC
TGAAGGAGCTTGTGGTTGTATTACCAGACTGTCTTGCTGATCATTTCGGGTCACTTGTTC
CTGGGATTGAGAAGGCTTTGAATGACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCCC
TTGTATTAACAAGGCTTGTTATGGCTTCACATTCACCATCTGTGTTTCATCCATACATCA
AGGCTCTTTCTGCACCTATACTGTCTGCTATCAGAGATAGATATTATAAAGTCACTGCTG
AGGCTTTGCGGGTGTGTGGAGAGCTAGTCCGTGTCCTTCGTCCAAATCTCGAGACAACCT
CAGTTGATTTTAAGCCATACATTGGTCCAATCTATAATGCAATACTGGGACGTTTGGCCA
ATCAAGATCAGGATCAGGAGGTAAAAGAATGCGCCATATCTTGCATGAGTTTGGTGGTCT
CTACTTTTGGTGATGGTCTTGAAAGAGAATTACCAGCATGCCTTCCCATACTCGTTGACA
GGATGGGTAATGAAATTACAAGACTTACAGCTGTCAAGGCATTTTCAGTTATTGCGAATT
CACCTCTACGTATTGATCTCTCGTGTGTCCTGGATCATGTTGTTTCTGAGCTCACAGCTT
TCCTTCGCAAGGCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGG
TTGTCACATATGGTGGTCAGATTGGCTCTTCTTCGTATGAGACAATAATCGCGGAACTTT
CAACCCTCATAAGTGACATGGATTTGCATATGACCGCTCTTGCATTGGAACTTTGTTGCA
CAATAATGGTTGACAGAAAATCTATTCAAAACGTTGGTTTAGCTGTTAGAGATAAAGTTT
TGCCTCAGGCCCTTGTTTTGATCAGGAGTGCCCTGTTGCAAGGGCAGGCACTGCAGGCTC
TTCAGAGGTTTTTTGCATCACTTGTTCAATCTGCAAATACTAGCTTTGATGCTTTGTTGG
AGTCCCTTATTTCTGCTGCTAAGCCATCACATTCAGGTAGTCTTGCTAAGCAAGCACTGT
CTTCTATTGCTAAGTGTGTTGCTGTTCTATGCTTAGCAGCTGGTGACCAGAAGTGTGCAT
CTACAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTGCTAAAC
AACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAGGACCTCAGCAATCATG
TTCAAATTGAGAACATCGTCATTGAATCGTTTCAATCACCTTTTGAGGAGATTAAGTCCG
CAGCATCCTATGCACTTGGAAACATTGCTGTTGGCAACCTCTCCAAGTATTTACCATTTA
TTTTGGATCAGATTGACAATCAACAGAAGAAGCAATATCTGTTGCTCCATTCACTTAAAG
AGGTAATCGTGCGACAATCTGTTGATCATACTGGCCAGAGTGAGCTACAGGATTCAAACA
TTGAGAAGATATTGGCATTGCTCTTCAATCACTGTGAAAGTGAGGAGGAGGGAGTTCGGA
ATGTTGTTGCAGAGTGTTTAGGAAAAATTTCTCTAATTGAACCAAAAAAACTAGTCCCTG
CTTTGGAGGTACGCACGTCTAGCCCAGCAGCAAATACAAGAGCTACGGTTGCTATTGCTA
TAAAATATTCAATTGTTGAACGACCTGAGAAAATAGATGAAATCATGTACTCCAAGATAT
CTACTTTCTTGATGTTGATTAAAGACAGCGATAGGCATGTGAGAAGAGCAGCAGTTCTGG
CTTTGAGCACAGCAGCGCACAACAAGCCAAATTTGATTAAAGGTCTTCTTCCAGAGATAT
TACCTCTTCTATACGACCAAACTGTTATTAAGCAAGAGTTAATCAGGACAGTTGATCTTG
GGCCTTTCAAACATGTTGTAGATGATGGTCTTGAACTCAGGAAAGCTGCCTTTGAATGTG
TGGATACTTTATTGGACAGTTGTCTTGATCAAGTGAATCCATCGTCCTTCATTGTACCTT
TCCTCTTGTCTGGTTTAGGTGACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTAT
CAAAGCTAGCAGACAAGTGCCCTTCCGCCGTCCTTGCTGTCCTGGACTCCATAGTTGAAC
CAATCGAGAAAACTATAAGCCACAAACCCAAGGGGGATGCAGTGAAGCAGGAGGTTGATC
GGAACGAGGACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGCG
GCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGCCACCCCCGCGC
TCGCCGAGAAGTACAACTCGGTGCGCGGCGAATGAGACCTGGGTTCTTGTACATGGTAGA
GGAATAGGTTAAACACCCAGAGTTGTCGCGCGCTCGTCAATCCTGTTGCCGCTTCCCCGC
ATGGTTGCTGAGGCAAAAGTCTGTACTCTGATGATGACGGTGGTTGATTTTTGACTGCTG
GACATAGTTGTCTTGTACAAAATCTGGTGGTAAATTCAGTAGAATTGCCGCCGATACATT
TACCTGGTGGTTCTCTTGTCGCAGTTCAGTTTCAGTTGACCTATGAAGCGCTGATGCAG