Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053799_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:4:241326568:241338982:1 gene:Zm00001d053799 gene_biotype:protein_coding transcript_biotype:protein_coding description:transglycosylase SLT domain containing protein expressed
Sequence

ATGTACAACTTGGCACCAACTTTATGCAAAATATATACCACAGCACAGTTTCTTGCTGAA
CATATGAGAACCTTTTTTCACCATGTCCAGAAAATAATGCAGATTGGGGCATGGAGCTTA
GCTGTTTCACTTTGCCTAAATAAAGTAATATATCATATCTCATCTAAATTTCATTCCCTT
TTCTGTTTTTTTTCTTCCCAACAGCGACGAAAACAAAGAACTACTGATCAATATAAAATG
GCTGTAAGCTTCAAATACTGGGACGATTGCTTGGATCCAGAGGATATGAGATTGATGTGG
CAGGATCCTGTTGTAAGTAAAGAGTGGAATGATGCTGGGGAAGAGCAAGGACAGAAAGTT
CACCTGTCACGGGACCCTGATGGTGAAGCATATCTCACACAAACTGAAATGATGGCAGTG
GCGGCAATTACCGTCCATAGACATTTCAAATCGCAGCTAGACCCGTATATGATAGGAGCA
CTTGCTGAAATTGCAAGTGGAAGGAGACTCTTTGTAGATACCTATGATCGCAAGACTAAA
GAAACCAAGGTTGGCATACTGCAGGTGGCACCTGAAGTTGCTCAATGGCTTGGAAGGGAA
CTAGGTTACAAGAGTTATGACATTGAAGATAATACTAATTTGCTGTACTGGCCTCTTGTG
AATGTCTATTTTGGTGCTGCTTATGCAAAATGGCTCTTCTCTTGTGATGACAGACAAAGA
ACTGAAGAATTTGTTGTTAGAGCATATAAAGGCGGCAAAAAGAAGGCTGCTCACAAATCA
ACTTCCCCCATCTTCCAGCGTTATCTTTATGTGAAAGAGAACCTGTTGTCTATAAGACAA
CCAGAAATTTGCCATGACCTCGCTCCTGACCAAGAAAAACTGTCAAGCACAGAATCACAG
TTGATATATTGGGATTCCAAGGTATCAGAGGCTGATATGGATGCAATGTGGAAACATCCT
GATGTGTATAAGGAGTGGATAAAATCTGGTGAGAGACGTGGAAATGTACGATTCTCCCAT
GATGCAAAGAACAGGCCTTACCTTTCTCGCGTTGAGGTGAAGGCTGTTGCCGAAATAATC
ATATCACGCCATTTGAGCACAAGAGGAGTAAAACCAGAAGCTCTCGCAGCACTTGCAGAG
GTTTGCAGTATGCGCTTTGTTCATGGAGTAAGTACCCGGACTGGATTGATGGGAATAGAC
TACCCTACTGCTGTATGGCTTTCCAGGCAAGTGGATTGTGGCTACAGGGCATATACACTG
ATCTCTGTGGATGATCTCTACAATCCTTTTGCATCAATGTACTTTGGTGCATCGTACTTG
GCATGGTTGTCTCAGTACGAAGGAAGGGAGCAAAGCTACGAATTCATTGTCCAGGCTTAC
CTTGGGGGACCAGAGAATGTTAGTCTTCAGGAGACTGGACCGTTTTGGAACCAATTCCTG
GAGTCATTAACACAGTATCAAGATCCAAAGAAGGACAATAATAATAGCTGCTGTATCTTG
TGA

Peptide Sequence

PEP ID

Zm00001d053799_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:4:241326568:241338982:1 gene:Zm00001d053799 transcript:Zm00001d053799_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:transglycosylase SLT domain containing protein expressed
Sequence

MYNLAPTLCKIYTTAQFLAEHMRTFFHHVQKIMQIGAWSLAVSLCLNKVIYHISSKFHSL
FCFFSSQQRRKQRTTDQYKMAVSFKYWDDCLDPEDMRLMWQDPVVSKEWNDAGEEQGQKV
HLSRDPDGEAYLTQTEMMAVAAITVHRHFKSQLDPYMIGALAEIASGRRLFVDTYDRKTK
ETKVGILQVAPEVAQWLGRELGYKSYDIEDNTNLLYWPLVNVYFGAAYAKWLFSCDDRQR
TEEFVVRAYKGGKKKAAHKSTSPIFQRYLYVKENLLSIRQPEICHDLAPDQEKLSSTESQ
LIYWDSKVSEADMDAMWKHPDVYKEWIKSGERRGNVRFSHDAKNRPYLSRVEVKAVAEII
ISRHLSTRGVKPEALAALAEVCSMRFVHGVSTRTGLMGIDYPTAVWLSRQVDCGYRAYTL
ISVDDLYNPFASMYFGASYLAWLSQYEGREQSYEFIVQAYLGGPENVSLQETGPFWNQFL
ESLTQYQDPKKDNNNSCCIL

Transcript Sequence

Transcript ID

Zm00001d053799_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:241326568:241338982:1 gene:Zm00001d053799 gene_biotype:protein_coding transcript_biotype:protein_coding description:transglycosylase SLT domain containing protein expressed
Sequence

ATCATTTGCGGTTCTACTGTGTCTCTGTTTTCCTAAATGCTAATTGATCGGTTTCATGTT
ATGCTTACATGTTTGTCGGATGATACCAACAAGTGTTTTCATCTGCAAGTGAATGCATGT
TTTTTTTTCTTTCTGAACAAACGTGATTGCTCAGGATATCTTTGATGAAATGATTGGATA
TTCTTTTTATGTACAACTTGGCACCAACTTTATGCAAAATATATACCACAGCACAGTTTC
TTGCTGAACATATGAGAACCTTTTTTCACCATGTCCAGAAAATAATGCAGATTGGGGCAT
GGAGCTTAGCTGTTTCACTTTGCCTAAATAAAGTAATATATCATATCTCATCTAAATTTC
ATTCCCTTTTCTGTTTTTTTTCTTCCCAACAGCGACGAAAACAAAGAACTACTGATCAAT
ATAAAATGGCTGTAAGCTTCAAATACTGGGACGATTGCTTGGATCCAGAGGATATGAGAT
TGATGTGGCAGGATCCTGTTGTAAGTAAAGAGTGGAATGATGCTGGGGAAGAGCAAGGAC
AGAAAGTTCACCTGTCACGGGACCCTGATGGTGAAGCATATCTCACACAAACTGAAATGA
TGGCAGTGGCGGCAATTACCGTCCATAGACATTTCAAATCGCAGCTAGACCCGTATATGA
TAGGAGCACTTGCTGAAATTGCAAGTGGAAGGAGACTCTTTGTAGATACCTATGATCGCA
AGACTAAAGAAACCAAGGTTGGCATACTGCAGGTGGCACCTGAAGTTGCTCAATGGCTTG
GAAGGGAACTAGGTTACAAGAGTTATGACATTGAAGATAATACTAATTTGCTGTACTGGC
CTCTTGTGAATGTCTATTTTGGTGCTGCTTATGCAAAATGGCTCTTCTCTTGTGATGACA
GACAAAGAACTGAAGAATTTGTTGTTAGAGCATATAAAGGCGGCAAAAAGAAGGCTGCTC
ACAAATCAACTTCCCCCATCTTCCAGCGTTATCTTTATGTGAAAGAGAACCTGTTGTCTA
TAAGACAACCAGAAATTTGCCATGACCTCGCTCCTGACCAAGAAAAACTGTCAAGCACAG
AATCACAGTTGATATATTGGGATTCCAAGGTATCAGAGGCTGATATGGATGCAATGTGGA
AACATCCTGATGTGTATAAGGAGTGGATAAAATCTGGTGAGAGACGTGGAAATGTACGAT
TCTCCCATGATGCAAAGAACAGGCCTTACCTTTCTCGCGTTGAGGTGAAGGCTGTTGCCG
AAATAATCATATCACGCCATTTGAGCACAAGAGGAGTAAAACCAGAAGCTCTCGCAGCAC
TTGCAGAGGTTTGCAGTATGCGCTTTGTTCATGGAGTAAGTACCCGGACTGGATTGATGG
GAATAGACTACCCTACTGCTGTATGGCTTTCCAGGCAAGTGGATTGTGGCTACAGGGCAT
ATACACTGATCTCTGTGGATGATCTCTACAATCCTTTTGCATCAATGTACTTTGGTGCAT
CGTACTTGGCATGGTTGTCTCAGTACGAAGGAAGGGAGCAAAGCTACGAATTCATTGTCC
AGGCTTACCTTGGGGGACCAGAGAATGTTAGTCTTCAGGAGACTGGACCGTTTTGGAACC
AATTCCTGGAGTCATTAACACAGTATCAAGATCCAAAGAAGGACAATAATAATAGCTGCT
GTATCTTGTGAAGTTATCTGATACCTCTTCCAACTTTGGTTACTGAAGTTTCTGCTGAGG
ATCATTTATGAATGCTCATCGACATTCTTGCCAAATTTCAAATCCCCTCCCGAAGGGTTC
GGGTACTGGCAAACAATTTTGCTTGCTAGACAACACGAGGTACAGGATAACAGGGGCTGT
CAGTTCGTTCATACATTTTGGTCGCTGGCGCCTTGCTCATGTTTAAACAATTATTGATCC
CATCTCGGTTCATACAGCTGCCCACACCCCCACCCCCGGTTCCATATGTTTTTTGTTCTA
CTTTTACCATCAGAAAGTTAACGCCCTTCCTGTTCTTTCCGCTCATTGGTGTATGGCATA
CTGTACCTCTGTTGTATAATAATAGGAACTTTAGAAGAAAATGGCCTTTGTAAAATTATC
GACGCTCCATAGTACATGTGCTACCGTTATAGATGTACCAACTGATACTCTGATAGCAGA
ACCGTAAAATGTCGTCGCAGACTCGCAGCTGTG