Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053765_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:4:240697317:240700936:-1 gene:Zm00001d053765 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:vacuolar proton pump3 description: vacuolar proton pump3
Sequence

ATGGCTGAGGTTCTCATGGACTTTCCCCAGTTGACGATGACATTGCCTGATGGCCGTGAG
GAGTCTGTCATGAAGAGAACAACACTGGTGGCTAACACATCAAACATGCCTGTCGCTGCT
CGTGAAGCTTCCATTTACACTGGAATTACAATTGCTGAGTATTTCCGTGATATGGGCTAC
AACGTCAGTATGATGGCTGACTCCACCTCCCGGTGGGCTGAGGCATTGCGTGAGATCTCA
GGGCGTTTGGCTGAAATGCCTGCTGATAGTGGTTACCCAGCTTACTTGGCTGCACGTTTG
GCATCCTTTTATGAACGTGCTGGTAAGGTAAAATGTCTGGGAAGTCCAGACAGGAATGGC
AGTGTCACAATTGTTGGAGCTGTCTCTCCTCCTGGTGGTGATTTTTCAGACCCTGTTACC
TCCGCAACCCTCAGTATTGTTCAGGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGG
AAGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGGCCCTTGAG
TCTTTTTACGAGAAATTTGATCCAGATTTCATTGATATTAGGACAAAAGCACGTGAGGTG
TTGCAGAGGGAGGACGATCTGAATGAAATTGTGCAGCTTGTTGGTAAAGATGCGCTGGCA
GAATCTGACAAGATTACGCTGGAGACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAA
AATGCATTCACCCCATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGC
AACATTATTCACTTCAACACATTGGCAAATCAGGCTGTGGAGCGGGCAGCTGGTACTGAC
GGCCATAAGATAACATACAGTGTCATAAAGCATCGGTTGGGGGATCTATTTTATCGCCTA
GTATCCCAAAAGTTCGAGGATCCTGCAGAAGGCGAAGAAGCTTTGGTCGGCAAGTTTAAG
AAACTGTACGACGACCTTACCACTGGGTTCCGCAACCTAGAAGATGAGGCACGGTGA

Peptide Sequence

PEP ID

Zm00001d053765_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:4:240697317:240700936:-1 gene:Zm00001d053765 transcript:Zm00001d053765_T007 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:vacuolar proton pump3 description: vacuolar proton pump3
Sequence

MAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY
NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGSPDRNG
SVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSKALE
SFYEKFDPDFIDIRTKAREVLQREDDLNEIVQLVGKDALAESDKITLETAKLLREDYLAQ
NAFTPYDKFCPFYKSVWMMRNIIHFNTLANQAVERAAGTDGHKITYSVIKHRLGDLFYRL
VSQKFEDPAEGEEALVGKFKKLYDDLTTGFRNLEDEAR

Transcript Sequence

Transcript ID

Zm00001d053765_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:240697317:240700936:-1 gene:Zm00001d053765 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:vacuolar proton pump3 description: vacuolar proton pump3
Sequence

GCAGCGTGTACTGGATGCACTATTCCCCTCGGTTCTGGGAGGCACTTGTGCTATTCCAGG
AGCATTTGGCTGTGGTAAAACTGTCATTAGTCAGGCACTTTCCAAGTACTCCAATTCCGA
AGCTGTGGTTTATGTGGGCTGTGGTGAACGAGGAAACGAGATGGCTGAGGTTCTCATGGA
CTTTCCCCAGTTGACGATGACATTGCCTGATGGCCGTGAGGAGTCTGTCATGAAGAGAAC
AACACTGGTGGCTAACACATCAAACATGCCTGTCGCTGCTCGTGAAGCTTCCATTTACAC
TGGAATTACAATTGCTGAGTATTTCCGTGATATGGGCTACAACGTCAGTATGATGGCTGA
CTCCACCTCCCGGTGGGCTGAGGCATTGCGTGAGATCTCAGGGCGTTTGGCTGAAATGCC
TGCTGATAGTGGTTACCCAGCTTACTTGGCTGCACGTTTGGCATCCTTTTATGAACGTGC
TGGTAAGGTAAAATGTCTGGGAAGTCCAGACAGGAATGGCAGTGTCACAATTGTTGGAGC
TGTCTCTCCTCCTGGTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGT
TCAGGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCTGTGAA
TTGGCTCATTTCCTATTCGAAATACTCCAAGGCCCTTGAGTCTTTTTACGAGAAATTTGA
TCCAGATTTCATTGATATTAGGACAAAAGCACGTGAGGTGTTGCAGAGGGAGGACGATCT
GAATGAAATTGTGCAGCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACGCT
GGAGACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCATATGA
TAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACATTATTCACTTCAACAC
ATTGGCAAATCAGGCTGTGGAGCGGGCAGCTGGTACTGACGGCCATAAGATAACATACAG
TGTCATAAAGCATCGGTTGGGGGATCTATTTTATCGCCTAGTATCCCAAAAGTTCGAGGA
TCCTGCAGAAGGCGAAGAAGCTTTGGTCGGCAAGTTTAAGAAACTGTACGACGACCTTAC
CACTGGGTTCCGCAACCTAGAAGATGAGGCACGGTGAACTGCTGTAGATTTTGTGTAAGA
CAATAATGGCTGCCAAATGTTTTATAAGGTACGGAAGTTGTAGATTGAGACCATGTATGA
GAATTTTCCCCACCGCTACTCATTTCTTTGCCACCACTATTTTAGTCATCAGTGCTGGAT
GGGCACCCTGTTTATTTCGACGTACCCTTTATTGCTAGCATTGTAATAAGCGATGGGCAT
GCTTGTAGTTGAATAAGTACAATGTCCATGTATTCAAACATCAGCGTCATGTTTATTTGT
TTGT