Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d053741_T005
CDS Infomation	cds chromosome:B73_RefGen_v4:4:240159085:240163901:-1 gene:Zm00001d053741 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy11a description:Putative autophagy domain family protein
Sequence	ATGAGTTCCGGGTCGGCGGTGACAGGCGGTGGTGCGGAGGAGGCGGCGGCGGTGCCGCTG GGGCAGAAGCTGATTGTGCACGTGGCGGAGAACGGCCACACCTTGGAGTTCCAGTGCGGC GGCGACACGCTCGTCGAGGCCATCCAGCACTCCATCCAGCTCCACTGCGAAATACCCCCT GCCGATCAGCTCCTCCTCTGCGGCAACATCTCCCTCGACGGCGCCAACGCGCTCGCCACC TACAAGCTTCCGCGGGACGACCGTGAGGTCTTCCTCTACAACAAGGCCCGGCTCCTTGCG GACTCCCGGCCCCCGGCGCCGGAGTCCCTCTACATCCCTGAGCCAAATATTCCTCCGCCG CCCCGGCCGCAGGGCTCACCACCTTCGGACGCATCTGCAGACCCCGCGCTGAAGGCGCTG GTATCCTATGAAACAAGATTCAGATATCACTTCCAGGTCGCCAATGCGGTGTATCAATCT AGTTTGGCAAAATTTGAGCTGTGCAGGCGGCTTCTGCGGGAGGGGCAGGTCCAGGAGCGA GCGCTGGACACAGCAGGGAGCAACCTAGAGCACACATTCCGGAAACTCTCACAGAGGTAT TCAGAATTTTTGCGGTGCTTCACACAACAGCACCGTTCACATGTTGAGATGCTGGCCAAT TTCGAGAGAGATGTGCAGAAGCTGCGTGCTGTTAGGCTGCACCCAGCCCTGCAAAGTGAG GGGCGGCATTGCTTGATGGACCTTCTCAAGGAAAATGACCTGAGGAAATTGGCTGACGAA TGCTTCTGCTCACATAAGAAGTTTGAGGTTAAGGTGTCACAGCTGAAGGCAAACTTCTTG GAGCTGAAGAAGAGGGTGGAAGGCTTATTCCATGCCATGAGCTCAGGTGGGTGCAAGGAT GTTGAGAAGCTGATAAAGGAGCACCAGGGAGTCATTGGTGACCAGAAGATCATCATGCAA GCTCTAAGCAAAGATGTGGACACCTCAAAGAAGCTTGTTGATGACTGCTCAAGTTGCCAG CTATCTGCTTCTCTCCGTCCTCATGATGCAGTCTCAGCGGTTGGCCGTATCTACGAAGTG CATGAAAAGGATAACTTGCCCAGTATACGGGATTTTGATCAGAGGCTTACAAAATTGCTT GAGAAATGCAAGGACAAGAAGAATGAAATGAATACTTTGGTCCATGTTTGCATGCAAAGA GTAAAATCTTCTCAGATTAGTATCAAAGGCATGATGAGTGAACTCGTTGCATTCCAAGAG GTGATGGGTCATCAAGAAGATTTTGATAATCTGAAAATAGTCAGTGGCTTGGGTCATGCA TATAGAGCTTGTGTCGCCGAGGTAGCCAGGAGGAAATCGTATTTTAAGCTGTATACTGGA TTGGCTGGAAAATATGCTGAAACGTTGGCAATCGAGTGTCAAAACGAGAAAACAAGACGA GAGGATTTTCATAGGACATGGAGCAGGTACATTCCAGATGATGTCATGTGTTCCATGGGA CTCTTTGATTCTCCAAGCCAGTGTGATGTAAAAGTTGCTCCTTTTGATCTTGATCTTCTT CCCATTGATGTTGATGATGTGGAAAAGCTTGCTCCCCAGTCTATACTGGGTTCTTTTTTA AAATCTGAGAGATCACAGCTAGCAAAGCCTTTGCTAAGCAATTCTACCAGTGGAAATTTG AACAAATCTGAACAACATTCTCTGAGTGCTGATGATAAGATGGATTTCCAAGATTTTCTG GGGGGCTATGATACTATTGACATTGCAGGAACTAGTAAGTTAGAAGTGGAAAATGCCAGG CTAAAAGCAGAACTTGCTTCTGCAATTGCAATTCTCTGCGGTGCTGGATATGGATATGAG TCTATTGACGAAGGGCAAATTGATGCTGTATTGAAAAAAGCAAGGGAAAAAACTGCTGAG GCACTTGCTGCAAAGGATGAGTTTGCTTACCAGCTTCAGTCATTGCTCACTGCAAAGCAG GAAAAATGCTTGGCATATGAGAAGCGGATCCAGGATCTTGAGGAACGCTTAACCAACCAG TACATGCAAGGTCACATGGTGTCGGGAAGCAAAGGCATGTCTGATTCCCTGCTTTCTGCA TTTAAAAGTAATGAGTGCAACCTGGATTTATCTGAAGGCAGGCAACCCCAAATACGTGAT GAATCAAGTGTGGCCATGGATGAGGTCTCTTCAACATCTGAACAGCCATCTAAACAAACA GAAGGTGGCGATGAGAATATGACTGACATTTCGGGTGCACTGAACTTGCAGTTGATCGAT TCAGCAGCATGTACTAATCTGGATGCTTTCATGACAGAACTGCCACGTGATAATGAACAC AAGATTGTAAACATCAATAAGGAAGGACACATGTTGACACAACTTACTATGGCTGATACT TCTGATGTTCCTATAGAAGATCCTCTTAGCAACTTAAACTCAAGAACTGATGATCATCAT GCCCTAGAGTTGAGGGATAAGGAGCTCCTTGTGTCAGAGCTGCAAAACACGCTTGATCAA AAATCAAAACAGTTGGGTGAAACTGAAATTAAACTTAGTGCCATGATGGATGAGGTTAAT TCTCTGAAGAAAGAACTTGAACAAACCCGGGGCCTTCTTGATGAATCTCAGATGAATTGT GCGCACCTTGAAAACTGTTTACATGAAGCAAGAGAAGAGGCCCGAACAAACAAATGTTCA GCTGACAGAAGGGCTGTTGAGTATGATGCTCTGCGGTCGTCTGCTTTGAGGATACATGGT TTGTTCGAAAGGCTAAATAACTGCATCACTGCACCAGGTGTGACTGGCTTTGCAGAGTCA CTGCATTCTTTGGCTGCCTCCTTGGCAAGCTCTGTAAAGAAGGATGAAGCTGATACCACT GTTCAGTTTCAACAATGCATCAAGATCCTGGCGGACAAAGTTTATTTACTGACACGACAG AGTGCTGAGCTGCTAGAACGCTATTCAGCTATGCAGGCAGTACATGGAGGTATCACAAAA GAGCTGGATGAGAAGAAAGAGCTGATTAAGAATCTCTACAATAAACTTCAACAAGAAAAA CAGGTTTGTCTTTTAGTTTTGTTACATTAA

Peptide Sequence

PEP ID	Zm00001d053741_P005
PEP Infomation	pep chromosome:B73_RefGen_v4:4:240159085:240163901:-1 gene:Zm00001d053741 transcript:Zm00001d053741_T005 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy11a description:Putative autophagy domain family protein
Sequence	MSSGSAVTGGGAEEAAAVPLGQKLIVHVAENGHTLEFQCGGDTLVEAIQHSIQLHCEIPP ADQLLLCGNISLDGANALATYKLPRDDREVFLYNKARLLADSRPPAPESLYIPEPNIPPP PRPQGSPPSDASADPALKALVSYETRFRYHFQVANAVYQSSLAKFELCRRLLREGQVQER ALDTAGSNLEHTFRKLSQRYSEFLRCFTQQHRSHVEMLANFERDVQKLRAVRLHPALQSE GRHCLMDLLKENDLRKLADECFCSHKKFEVKVSQLKANFLELKKRVEGLFHAMSSGGCKD VEKLIKEHQGVIGDQKIIMQALSKDVDTSKKLVDDCSSCQLSASLRPHDAVSAVGRIYEV HEKDNLPSIRDFDQRLTKLLEKCKDKKNEMNTLVHVCMQRVKSSQISIKGMMSELVAFQE VMGHQEDFDNLKIVSGLGHAYRACVAEVARRKSYFKLYTGLAGKYAETLAIECQNEKTRR EDFHRTWSRYIPDDVMCSMGLFDSPSQCDVKVAPFDLDLLPIDVDDVEKLAPQSILGSFL KSERSQLAKPLLSNSTSGNLNKSEQHSLSADDKMDFQDFLGGYDTIDIAGTSKLEVENAR LKAELASAIAILCGAGYGYESIDEGQIDAVLKKAREKTAEALAAKDEFAYQLQSLLTAKQ EKCLAYEKRIQDLEERLTNQYMQGHMVSGSKGMSDSLLSAFKSNECNLDLSEGRQPQIRD ESSVAMDEVSSTSEQPSKQTEGGDENMTDISGALNLQLIDSAACTNLDAFMTELPRDNEH KIVNINKEGHMLTQLTMADTSDVPIEDPLSNLNSRTDDHHALELRDKELLVSELQNTLDQ KSKQLGETEIKLSAMMDEVNSLKKELEQTRGLLDESQMNCAHLENCLHEAREEARTNKCS ADRRAVEYDALRSSALRIHGLFERLNNCITAPGVTGFAESLHSLAASLASSVKKDEADTT VQFQQCIKILADKVYLLTRQSAELLERYSAMQAVHGGITKELDEKKELIKNLYNKLQQEK QVCLLVLLH

Transcript Sequence

Transcript ID	Zm00001d053741_T005
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:240159085:240163901:-1 gene:Zm00001d053741 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy11a description:Putative autophagy domain family protein
Sequence	TCTATTAATCAAGAAATTCCAAACTTCTCGCCCAAATCCGTGCGGACTTGGTGAAGCAGG GTAAATTGGGCCAGGAGACGTCGGTCCCGGCCACGGAGTCCCCCTCCCCTTCAGGCCGTT CTTGTTGGGGGAGATAAAAGGATTCGGTGCGTCTGATCGGAGGCGTGGGAGAGAAGGCCT CGGCAGACGTTGTTGGCTCGTGCTCTTCTTCGACGGACGGAGGCTGTCGTGCTGGAGAGG TTAAAGTGTTTGGTGTTTCGTGTTTGGTGGTATATGGTAGAACTGTAGATTTTGATCTGG ACTGCGTGAAGCAAAAGAAGGGAAAAAAAAAAAGAAGATTCGGTTTTGGAGTGAAGTTGT GGCTAGTCGGGAATCGCAAGGAAGATGAGTTCCGGGTCGGCGGTGACAGGCGGTGGTGCG GAGGAGGCGGCGGCGGTGCCGCTGGGGCAGAAGCTGATTGTGCACGTGGCGGAGAACGGC CACACCTTGGAGTTCCAGTGCGGCGGCGACACGCTCGTCGAGGCCATCCAGCACTCCATC CAGCTCCACTGCGAAATACCCCCTGCCGATCAGCTCCTCCTCTGCGGCAACATCTCCCTC GACGGCGCCAACGCGCTCGCCACCTACAAGCTTCCGCGGGACGACCGTGAGGTCTTCCTC TACAACAAGGCCCGGCTCCTTGCGGACTCCCGGCCCCCGGCGCCGGAGTCCCTCTACATC CCTGAGCCAAATATTCCTCCGCCGCCCCGGCCGCAGGGCTCACCACCTTCGGACGCATCT GCAGACCCCGCGCTGAAGGCGCTGGTATCCTATGAAACAAGATTCAGATATCACTTCCAG GTCGCCAATGCGGTGTATCAATCTAGTTTGGCAAAATTTGAGCTGTGCAGGCGGCTTCTG CGGGAGGGGCAGGTCCAGGAGCGAGCGCTGGACACAGCAGGGAGCAACCTAGAGCACACA TTCCGGAAACTCTCACAGAGGTATTCAGAATTTTTGCGGTGCTTCACACAACAGCACCGT TCACATGTTGAGATGCTGGCCAATTTCGAGAGAGATGTGCAGAAGCTGCGTGCTGTTAGG CTGCACCCAGCCCTGCAAAGTGAGGGGCGGCATTGCTTGATGGACCTTCTCAAGGAAAAT GACCTGAGGAAATTGGCTGACGAATGCTTCTGCTCACATAAGAAGTTTGAGGTTAAGGTG TCACAGCTGAAGGCAAACTTCTTGGAGCTGAAGAAGAGGGTGGAAGGCTTATTCCATGCC ATGAGCTCAGGTGGGTGCAAGGATGTTGAGAAGCTGATAAAGGAGCACCAGGGAGTCATT GGTGACCAGAAGATCATCATGCAAGCTCTAAGCAAAGATGTGGACACCTCAAAGAAGCTT GTTGATGACTGCTCAAGTTGCCAGCTATCTGCTTCTCTCCGTCCTCATGATGCAGTCTCA GCGGTTGGCCGTATCTACGAAGTGCATGAAAAGGATAACTTGCCCAGTATACGGGATTTT GATCAGAGGCTTACAAAATTGCTTGAGAAATGCAAGGACAAGAAGAATGAAATGAATACT TTGGTCCATGTTTGCATGCAAAGAGTAAAATCTTCTCAGATTAGTATCAAAGGCATGATG AGTGAACTCGTTGCATTCCAAGAGGTGATGGGTCATCAAGAAGATTTTGATAATCTGAAA ATAGTCAGTGGCTTGGGTCATGCATATAGAGCTTGTGTCGCCGAGGTAGCCAGGAGGAAA TCGTATTTTAAGCTGTATACTGGATTGGCTGGAAAATATGCTGAAACGTTGGCAATCGAG TGTCAAAACGAGAAAACAAGACGAGAGGATTTTCATAGGACATGGAGCAGGTACATTCCA GATGATGTCATGTGTTCCATGGGACTCTTTGATTCTCCAAGCCAGTGTGATGTAAAAGTT GCTCCTTTTGATCTTGATCTTCTTCCCATTGATGTTGATGATGTGGAAAAGCTTGCTCCC CAGTCTATACTGGGTTCTTTTTTAAAATCTGAGAGATCACAGCTAGCAAAGCCTTTGCTA AGCAATTCTACCAGTGGAAATTTGAACAAATCTGAACAACATTCTCTGAGTGCTGATGAT AAGATGGATTTCCAAGATTTTCTGGGGGGCTATGATACTATTGACATTGCAGGAACTAGT AAGTTAGAAGTGGAAAATGCCAGGCTAAAAGCAGAACTTGCTTCTGCAATTGCAATTCTC TGCGGTGCTGGATATGGATATGAGTCTATTGACGAAGGGCAAATTGATGCTGTATTGAAA AAAGCAAGGGAAAAAACTGCTGAGGCACTTGCTGCAAAGGATGAGTTTGCTTACCAGCTT CAGTCATTGCTCACTGCAAAGCAGGAAAAATGCTTGGCATATGAGAAGCGGATCCAGGAT CTTGAGGAACGCTTAACCAACCAGTACATGCAAGGTCACATGGTGTCGGGAAGCAAAGGC ATGTCTGATTCCCTGCTTTCTGCATTTAAAAGTAATGAGTGCAACCTGGATTTATCTGAA GGCAGGCAACCCCAAATACGTGATGAATCAAGTGTGGCCATGGATGAGGTCTCTTCAACA TCTGAACAGCCATCTAAACAAACAGAAGGTGGCGATGAGAATATGACTGACATTTCGGGT GCACTGAACTTGCAGTTGATCGATTCAGCAGCATGTACTAATCTGGATGCTTTCATGACA GAACTGCCACGTGATAATGAACACAAGATTGTAAACATCAATAAGGAAGGACACATGTTG ACACAACTTACTATGGCTGATACTTCTGATGTTCCTATAGAAGATCCTCTTAGCAACTTA AACTCAAGAACTGATGATCATCATGCCCTAGAGTTGAGGGATAAGGAGCTCCTTGTGTCA GAGCTGCAAAACACGCTTGATCAAAAATCAAAACAGTTGGGTGAAACTGAAATTAAACTT AGTGCCATGATGGATGAGGTTAATTCTCTGAAGAAAGAACTTGAACAAACCCGGGGCCTT CTTGATGAATCTCAGATGAATTGTGCGCACCTTGAAAACTGTTTACATGAAGCAAGAGAA GAGGCCCGAACAAACAAATGTTCAGCTGACAGAAGGGCTGTTGAGTATGATGCTCTGCGG TCGTCTGCTTTGAGGATACATGGTTTGTTCGAAAGGCTAAATAACTGCATCACTGCACCA GGTGTGACTGGCTTTGCAGAGTCACTGCATTCTTTGGCTGCCTCCTTGGCAAGCTCTGTA AAGAAGGATGAAGCTGATACCACTGTTCAGTTTCAACAATGCATCAAGATCCTGGCGGAC AAAGTTTATTTACTGACACGACAGAGTGCTGAGCTGCTAGAACGCTATTCAGCTATGCAG GCAGTACATGGAGGTATCACAAAAGAGCTGGATGAGAAGAAAGAGCTGATTAAGAATCTC TACAATAAACTTCAACAAGAAAAACAGGTTTGTCTTTTAGTTTTGTTACATTAATTTCTG CATCTGGCAATGAATTTCCATGGCTGATGGGTAGAAACTTTTACAATTTTGCTAATTGTG CTAACGAGCAAATTTGCTATGGGTGTCTCCTGGAAAACTGTTTTAACAGGCCAGCAAAGA GAAGATATCATTTGGTCGGTTTGAAGTCCATGAGCTTGCTGTCTTTTTCCGAAACCCTGC TGGGCACTATGAGGCGATCAACCGGAACTGCTCAAACTATTATCTGTCTGAGGAATCTGT TGCCTTATTCACGGAGCAACACTCGCAGCACCCAGTGTACATAATCGGGCAAATCGTTCA TATTGAGCGGCGCGTAGCGCGTCCAGACCAGATGGGAGGAGCTCCACGCCCTGATAGCAG TGGCGGCCATCGGTCGCCCGCATCCATGCTCAACCCCTACAACCTACCTGGGGGCTGTGA GTACTTCGTGGTGACTGTTGCCATGCTGCCTGATGCTGCCAGTTAAAACAAAACACCTTC CTGATCCTGCCTGACAATTGGCTGTTGAAATGAAGGGAGAAAACTGTCAAAGTGTCAACT GTATATATACTAAAATTTATTGC