Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053628_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:4:237227892:237245986:-1 gene:Zm00001d053628 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal RNA-processing protein 8
Sequence

ATGGATCCACCGCAAGAGTTGGCCGCCGCCGGCCGCAAGCGGCGCCGGCGAGGAGGCGTC
CGGAACCGCAAAAGGCTTTCCTCGCAGAAGGGGCTCCCTCCAGCGACTGCGCCCCCAACG
CCGGCGTCCCCACCTGTCAAGCGGCGGCGCAAGGACATCGCTGGACAGGCCGCTGCTATG
CCGAAGAGAGGCAACACCTCGAGTCTACTGGACAAGATGCGTGCAAGGTTATCTGGTGGC
CATTTTAGAATGTTAAACGAGAAGCTATACACTTGCAGTGGAGAGGATGCATTTGACTAC
TTCAAAAACGACCCTAATCTTTTTGATGTGTATCATACAGGATATCAAGAGCAGATGTCA
CACTGGCCTGAACAGCCAGTGAATGTAATAATCAATTGGTTGAAGAGTCAGAATGCGTCA
TGGACTGTTGCTGATTTTGGCTGTGGCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAG
GTTTTCTCCATTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT
ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGATGGGAATC
AACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCAAACCAAGTGGTTGGCTTGTT
ATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGGAGGTGCTGATCCTGAAAAGTTT
TCTAAAGCCATTATCCAGCTTGGCTTTTCGCTTGTTTCAAAGGATGTGAAAAACAGAATG
TTCATTCTGTTCTACTTCAGGAAAAAGGAAAAAAGTAAGGTGGCGAAGAGCATCGATTGG
CCACAGCTGAAACCGTGCTTGTACAAACGGCGATGA

Peptide Sequence

PEP ID

Zm00001d053628_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:4:237227892:237245986:-1 gene:Zm00001d053628 transcript:Zm00001d053628_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal RNA-processing protein 8
Sequence

MDPPQELAAAGRKRRRRGGVRNRKRLSSQKGLPPATAPPTPASPPVKRRRKDIAGQAAAM
PKRGNTSSLLDKMRARLSGGHFRMLNEKLYTCSGEDAFDYFKNDPNLFDVYHTGYQEQMS
HWPEQPVNVIINWLKSQNASWTVADFGCGNAAVAKNLKNKVFSIDLVSDEPSVIACDMAH
TPLEPSSIDVAIFCLSLMGINYPSYLEEANRVLKPSGWLVIAEVRSRLDPSNGGADPEKF
SKAIIQLGFSLVSKDVKNRMFILFYFRKKEKSKVAKSIDWPQLKPCLYKRR

Transcript Sequence

Transcript ID

Zm00001d053628_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:237227892:237245986:-1 gene:Zm00001d053628 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal RNA-processing protein 8
Sequence

CAGAGGAGGATGATGCATTGTCACAGTTGTCTAACTGTGCCCTAACACAGACCGGAGCGT
CGCGGCGCTATCTCCTCCGCGGCTCTGCGCGCAGTCGTGTTGGCAACTGCAGCGGGGCGG
CGGCGTGCGTCCCTGCTGTGAGCTTCATCGCCCCGTATCAAGCTAGTTTAGGCTGTCAGC
GGGCCACAACTTCAGCCACACAACCCGGAACTCCGACAACCCTCGCGGCTCGTGCCGCCC
TCTCCCGCTCGGTCGTTCCCATGGATCCACCGCAAGAGTTGGCCGCCGCCGGCCGCAAGC
GGCGCCGGCGAGGAGGCGTCCGGAACCGCAAAAGGCTTTCCTCGCAGAAGGGGCTCCCTC
CAGCGACTGCGCCCCCAACGCCGGCGTCCCCACCTGTCAAGCGGCGGCGCAAGGACATCG
CTGGACAGGCCGCTGCTATGCCGAAGAGAGGCAACACCTCGAGTCTACTGGACAAGATGC
GTGCAAGGTTATCTGGTGGCCATTTTAGAATGTTAAACGAGAAGCTATACACTTGCAGTG
GAGAGGATGCATTTGACTACTTCAAAAACGACCCTAATCTTTTTGATGTGTATCATACAG
GATATCAAGAGCAGATGTCACACTGGCCTGAACAGCCAGTGAATGTAATAATCAATTGGT
TGAAGAGTCAGAATGCGTCATGGACTGTTGCTGATTTTGGCTGTGGCAATGCAGCAGTTG
CAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATCTCGTTTCAGATGAACCTTCAGTGA
TTGCTTGTGATATGGCTCATACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTT
GTCTTTCTTTGATGGGAATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCA
AACCAAGTGGTTGGCTTGTTATTGCTGAAGTGCGAAGTAGGCTAGACCCGAGCAACGGAG
GTGCTGATCCTGAAAAGTTTTCTAAAGCCATTATCCAGCTTGGCTTTTCGCTTGTTTCAA
AGGATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGAAAAAGGAAAAAAGTAAGG
TGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGCTTGTACAAACGGCGATGAGCCG
CTTGTCTCGTATCCACCAGTAATACTGTAGTTGTTGTAGTAGAGCTCTTCAAAAGTTTCG
TCAAAACTGAAAGTCTAGATTTAGGTCCCTCCGTACCTGTATGGCTGCATCTGTGTGCCA
CGCTATTCCATTATTTTCCACATTAGCTGCGTCTTTCATTTGTTGGACCTCACAAGAAAA
GATCACATAGGGAACGATGCATTGTTTGGAAGCAGATCATATATAATTCAAGTCTACTTT
TCACATGCT