Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053611_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:4:236401759:236413086:-1 gene:Zm00001d053611 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative SPOC domain / Transcription elongation factor S-II protein

Sequence

ATGGAATTCTCAAAGCAAGGGCAGGCACCCATGCCAAACAACATCGGACTACAACCGCTG
CCCTCTTCAAATGTCCAATCTAATCAAACAGAGTATCCATCTCTGTTTTATCCATCATCA
TTGCCTGGTGACTGGAGTTCACATATGGGAACCTCAGTACCAGTTAGCTCATATTATATT
GTCCCCATGAATCAGCAATCAGTCCAGCTAGGTGCTTCGAGGCCAGAGGTTTCACATCCG
GCACAACCTTTGCTAAGTAGGGTATCATTGAGGCCACCCCAGCAGGTGCTAAATATTCAA
ACATCTTTGCCAGCAATGGCTGGATCACAACCCTCACCATCTATGGCAGGCAGGAAATCA
CAACAGAAAGTTGCTTCTCCAAAGGTTCAAATGCTGAAATCTCCATCATTCCAGTCATCT
AATAAGCGGTCTGCACAGAAGGAGCTACCGTCAAAGGTCCAGCATCATCAACTTGAATCT
GTTAGGTCCAAGTTCAGGGAGTCACTTATTGCTGCGCTGAGTTTGGATTTGGATCAGCAG
AATAGGAGTCAGTCTCCTGATAATGTGCAGTCTGATGGTTCTACAGATAAATTCAAACCA
GCAGCAGGAGATGTGGTACAGGATTTAGCGGCAAACACATCAAAAGATGTGTGCACAACC
AATTCAGGTGTAGCCACAACTGTAGCTCCCAGTAGATGTGAGGAAAATGAGAAGTTAATC
AGTGGTTTAGCTTCAGAGATGACCATGAGCATCAACGATGACATGCAGCAACCATCAAAT
CAGGTTTCTTCAGAAGACGACTTATTGGGTCAGTGTATGGTTGCAGATGAACTTTTGCAA
GGTCACGGGCTTAGTTGGGTTTCTGATCATGTTGCCGGGATTTCTAAACCTAACGCAGAA
CCTAATGATTTAAAAAGGCCGCAAACTTCTGATGTGGAGTCTGAGTCAAAAAGAATAAAG
TCTGCTAATGAATTAGCAATGGATGAGGAGAAATTTAATCAAAGGGCTGAAAGTTTGGCG
TTTAGAATTGAAGAGGAGCTGTTCAAATTGTTTCGTGGGGTAAATAAGAAGTACAAGGAA
AAGGGCAGATCTCTTTTGTTTAATTTGAAAGACAAAAGCAACCCTGAGCTAAGAGAGAGG
GTTTTGTCTGGAGATATTGCGCCTGAGCGCCTTTGTTCAATGACTGCAGAAGAACTTGCC
TCCAAAGAACTCTCAGAGTGGCGGCTGGCTAAAGCTGAGGAGTTTGCACAGATGGTTGTC
CTTCCTAATATGGAGGTTGACCCAAGGCGTTTGGTTAGAAAAACTCACAAAGGAGAGTTC
CAAGTTGAAGTCGAAGAACCAGATGGTTTCTCAGTGGAGGTTGAACTTGGGAGTAATCTT
ACTAACATTCCATCAAAAACCGTCGAAGATCAGGCCAAGTCTAATGGAACAGATGGTAAA
GAAGATGTTCAAGAAAAAGACAAAGCATCTGATGGCACTTCACAAGATGAGGGTGGCAGA
ACAGGCAACAATGATATGCCAGGTGATGTACAATATATCGATAATGAGAAAGCTGATCTC
ATGCAGGAACTTATTTTGGATGACATGAAGGACACCGTAAATCTCCCACCGATCCCTTCT
TTAGATGAATTCATGCAGGGCTTAGATTCCGAGCCACCTTTTGTTGATCTCTCAGTTGGG
ACTCCTCAAGAAGATGTCAATGACTCTGAGGAACCTGGCACCACCATGGAGCCTGAGGAC
CTTCCAGAGACAGAGGATAATGCATCTACACCAGAGAAATTTGAATCTGAATCTGATAAA
TCATCTGCACAGGTTAACAGCGAGCCTAAGCTAGAGTCACCAGGAGATACAGCGGTTCCA
AATTCGGATCTTACTGAACCACGTGATGGAGAGCTGAATAAATCCTCCCCCTCCCATGGC
AAAGGTGAAGCCAAGAAAACGACGACTGATAATGCCTCTAATCCTGACTCTGTTCATCAG
GATCAGGCAGCCAGTATCCCTATGATACGTGAGAGCATATGGGAAGGTGCAATTCAGCTG
AACGTGTCTTCACTCTCTAATGTTGTTGCTATTTTCAAAAGTGGTGAAAAGCCATCATTA
AAAGTTTGGCGTAGCTTTGTTGAGATTAAGGGAAGAGTTAAACTTAGTGCTTTTCAAGAA
TTTGTCGAGCAGCTTCCCAAATCTAGAAGCCGTGCTATAATGATAACTGAGCTGTGTTGG
AAGGAGGGTTCATCAGAGAGCGGCCGCCAACATATCCTGCAGACTATTGATGCATACATT
TCAGATGGGAGAGTAGGATTAGCTGAGCCTGCAGAAGGAATAGAGCTGTACCTGTGCCCT
TCTCATGGGAAAACCGTGGAAATCCTCTCACGGCACTTGCCAAAGGAGCACCAGGAGAGC
CTTGCTGTGGCGGGATCATCCTTCATCGGAGTCGTCGTATGGCGGAGGCCCGACATTCCT
AGGGTACCCACCTCCCGCCACAGACATGATGGTTCCAAAAGGCAGTCGATCCTAGGGAAG
CCACCGGTTACAAATCCAGCAGCCGCAAGGCCCTCCCTACCTCTCAACTCTTATGGTGCG
CCACCAGGCTTTCCCAACCAGCGCCACCAGGAGGAGGAAGATGTAGCTGACGATGCCCCT
CCGGGCTTTGGACCCGGTGTTGCTAGGGATGAGGATGATCTTCCTGAATTTAATTTTGTT
AATCCGACACACCATGCTGCTAATGTAACTGCGCGTGCCTACATGGGTCGGCCACATGTA
CCACCACCCTCCGCTCGCCCAGCAGAGCAAATGAGGGAACTGGTTCAGAAGTATGGTAAA
AGATCATCTGTTCAAGCCCCACGTACCTGGGATGACGATGACGACGACATACCAGAGTGG
AACCCCAGCCAGACGATTAAACAGCCACCGCCACTGCCTCACGCCCCACAGCAACAGCCG
TTGCCTCCACCTCCCGTCCAGCAGATGGACGCCTACCAGCAGCAGTACCACATCACAAGT
GCAGTGCAGCCTCAGGTTCCCGTCGCATCGCTGACCCATGCCTACCTCCAGATCCAGCAG
CCTGGGCAGGCATGGCAGCAGCCTAGCAATCCTTGGTGGCCGGCGCAGGGAGTTGCTGCC
GCTGCCGCACAGCAACCACAGTATGGTGTAGTGCCTGGCAGTAGCGGCGTCCAGGGCTAC
GACTATAGCAGTGCGAGTGGTATGGCATGGAGGCCGAGATAG

Peptide Sequence

PEP ID

Zm00001d053611_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:4:236401759:236413086:-1 gene:Zm00001d053611 transcript:Zm00001d053611_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative SPOC domain / Transcription elongation factor S-II protein

Sequence

MEFSKQGQAPMPNNIGLQPLPSSNVQSNQTEYPSLFYPSSLPGDWSSHMGTSVPVSSYYI
VPMNQQSVQLGASRPEVSHPAQPLLSRVSLRPPQQVLNIQTSLPAMAGSQPSPSMAGRKS
QQKVASPKVQMLKSPSFQSSNKRSAQKELPSKVQHHQLESVRSKFRESLIAALSLDLDQQ
NRSQSPDNVQSDGSTDKFKPAAGDVVQDLAANTSKDVCTTNSGVATTVAPSRCEENEKLI
SGLASEMTMSINDDMQQPSNQVSSEDDLLGQCMVADELLQGHGLSWVSDHVAGISKPNAE
PNDLKRPQTSDVESESKRIKSANELAMDEEKFNQRAESLAFRIEEELFKLFRGVNKKYKE
KGRSLLFNLKDKSNPELRERVLSGDIAPERLCSMTAEELASKELSEWRLAKAEEFAQMVV
LPNMEVDPRRLVRKTHKGEFQVEVEEPDGFSVEVELGSNLTNIPSKTVEDQAKSNGTDGK
EDVQEKDKASDGTSQDEGGRTGNNDMPGDVQYIDNEKADLMQELILDDMKDTVNLPPIPS
LDEFMQGLDSEPPFVDLSVGTPQEDVNDSEEPGTTMEPEDLPETEDNASTPEKFESESDK
SSAQVNSEPKLESPGDTAVPNSDLTEPRDGELNKSSPSHGKGEAKKTTTDNASNPDSVHQ
DQAASIPMIRESIWEGAIQLNVSSLSNVVAIFKSGEKPSLKVWRSFVEIKGRVKLSAFQE
FVEQLPKSRSRAIMITELCWKEGSSESGRQHILQTIDAYISDGRVGLAEPAEGIELYLCP
SHGKTVEILSRHLPKEHQESLAVAGSSFIGVVVWRRPDIPRVPTSRHRHDGSKRQSILGK
PPVTNPAAARPSLPLNSYGAPPGFPNQRHQEEEDVADDAPPGFGPGVARDEDDLPEFNFV
NPTHHAANVTARAYMGRPHVPPPSARPAEQMRELVQKYGKRSSVQAPRTWDDDDDDIPEW
NPSQTIKQPPPLPHAPQQQPLPPPPVQQMDAYQQQYHITSAVQPQVPVASLTHAYLQIQQ
PGQAWQQPSNPWWPAQGVAAAAAQQPQYGVVPGSSGVQGYDYSSASGMAWRPR

Transcript Sequence

Transcript ID

Zm00001d053611_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:236401759:236413086:-1 gene:Zm00001d053611 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative SPOC domain / Transcription elongation factor S-II protein

Sequence

AGATGTCTGCATTTTGAAGTTTGGTAAATAGCATTGTTATATGTGCCAAGAGTTTTGGGA
GTTACTGGCATAATGGAATTCTCAAAGCAAGGGCAGGCACCCATGCCAAACAACATCGGA
CTACAACCGCTGCCCTCTTCAAATGTCCAATCTAATCAAACAGAGTATCCATCTCTGTTT
TATCCATCATCATTGCCTGGTGACTGGAGTTCACATATGGGAACCTCAGTACCAGTTAGC
TCATATTATATTGTCCCCATGAATCAGCAATCAGTCCAGCTAGGTGCTTCGAGGCCAGAG
GTTTCACATCCGGCACAACCTTTGCTAAGTAGGGTATCATTGAGGCCACCCCAGCAGGTG
CTAAATATTCAAACATCTTTGCCAGCAATGGCTGGATCACAACCCTCACCATCTATGGCA
GGCAGGAAATCACAACAGAAAGTTGCTTCTCCAAAGGTTCAAATGCTGAAATCTCCATCA
TTCCAGTCATCTAATAAGCGGTCTGCACAGAAGGAGCTACCGTCAAAGGTCCAGCATCAT
CAACTTGAATCTGTTAGGTCCAAGTTCAGGGAGTCACTTATTGCTGCGCTGAGTTTGGAT
TTGGATCAGCAGAATAGGAGTCAGTCTCCTGATAATGTGCAGTCTGATGGTTCTACAGAT
AAATTCAAACCAGCAGCAGGAGATGTGGTACAGGATTTAGCGGCAAACACATCAAAAGAT
GTGTGCACAACCAATTCAGGTGTAGCCACAACTGTAGCTCCCAGTAGATGTGAGGAAAAT
GAGAAGTTAATCAGTGGTTTAGCTTCAGAGATGACCATGAGCATCAACGATGACATGCAG
CAACCATCAAATCAGGTTTCTTCAGAAGACGACTTATTGGGTCAGTGTATGGTTGCAGAT
GAACTTTTGCAAGGTCACGGGCTTAGTTGGGTTTCTGATCATGTTGCCGGGATTTCTAAA
CCTAACGCAGAACCTAATGATTTAAAAAGGCCGCAAACTTCTGATGTGGAGTCTGAGTCA
AAAAGAATAAAGTCTGCTAATGAATTAGCAATGGATGAGGAGAAATTTAATCAAAGGGCT
GAAAGTTTGGCGTTTAGAATTGAAGAGGAGCTGTTCAAATTGTTTCGTGGGGTAAATAAG
AAGTACAAGGAAAAGGGCAGATCTCTTTTGTTTAATTTGAAAGACAAAAGCAACCCTGAG
CTAAGAGAGAGGGTTTTGTCTGGAGATATTGCGCCTGAGCGCCTTTGTTCAATGACTGCA
GAAGAACTTGCCTCCAAAGAACTCTCAGAGTGGCGGCTGGCTAAAGCTGAGGAGTTTGCA
CAGATGGTTGTCCTTCCTAATATGGAGGTTGACCCAAGGCGTTTGGTTAGAAAAACTCAC
AAAGGAGAGTTCCAAGTTGAAGTCGAAGAACCAGATGGTTTCTCAGTGGAGGTTGAACTT
GGGAGTAATCTTACTAACATTCCATCAAAAACCGTCGAAGATCAGGCCAAGTCTAATGGA
ACAGATGGTAAAGAAGATGTTCAAGAAAAAGACAAAGCATCTGATGGCACTTCACAAGAT
GAGGGTGGCAGAACAGGCAACAATGATATGCCAGGTGATGTACAATATATCGATAATGAG
AAAGCTGATCTCATGCAGGAACTTATTTTGGATGACATGAAGGACACCGTAAATCTCCCA
CCGATCCCTTCTTTAGATGAATTCATGCAGGGCTTAGATTCCGAGCCACCTTTTGTTGAT
CTCTCAGTTGGGACTCCTCAAGAAGATGTCAATGACTCTGAGGAACCTGGCACCACCATG
GAGCCTGAGGACCTTCCAGAGACAGAGGATAATGCATCTACACCAGAGAAATTTGAATCT
GAATCTGATAAATCATCTGCACAGGTTAACAGCGAGCCTAAGCTAGAGTCACCAGGAGAT
ACAGCGGTTCCAAATTCGGATCTTACTGAACCACGTGATGGAGAGCTGAATAAATCCTCC
CCCTCCCATGGCAAAGGTGAAGCCAAGAAAACGACGACTGATAATGCCTCTAATCCTGAC
TCTGTTCATCAGGATCAGGCAGCCAGTATCCCTATGATACGTGAGAGCATATGGGAAGGT
GCAATTCAGCTGAACGTGTCTTCACTCTCTAATGTTGTTGCTATTTTCAAAAGTGGTGAA
AAGCCATCATTAAAAGTTTGGCGTAGCTTTGTTGAGATTAAGGGAAGAGTTAAACTTAGT
GCTTTTCAAGAATTTGTCGAGCAGCTTCCCAAATCTAGAAGCCGTGCTATAATGATAACT
GAGCTGTGTTGGAAGGAGGGTTCATCAGAGAGCGGCCGCCAACATATCCTGCAGACTATT
GATGCATACATTTCAGATGGGAGAGTAGGATTAGCTGAGCCTGCAGAAGGAATAGAGCTG
TACCTGTGCCCTTCTCATGGGAAAACCGTGGAAATCCTCTCACGGCACTTGCCAAAGGAG
CACCAGGAGAGCCTTGCTGTGGCGGGATCATCCTTCATCGGAGTCGTCGTATGGCGGAGG
CCCGACATTCCTAGGGTACCCACCTCCCGCCACAGACATGATGGTTCCAAAAGGCAGTCG
ATCCTAGGGAAGCCACCGGTTACAAATCCAGCAGCCGCAAGGCCCTCCCTACCTCTCAAC
TCTTATGGTGCGCCACCAGGCTTTCCCAACCAGCGCCACCAGGAGGAGGAAGATGTAGCT
GACGATGCCCCTCCGGGCTTTGGACCCGGTGTTGCTAGGGATGAGGATGATCTTCCTGAA
TTTAATTTTGTTAATCCGACACACCATGCTGCTAATGTAACTGCGCGTGCCTACATGGGT
CGGCCACATGTACCACCACCCTCCGCTCGCCCAGCAGAGCAAATGAGGGAACTGGTTCAG
AAGTATGGTAAAAGATCATCTGTTCAAGCCCCACGTACCTGGGATGACGATGACGACGAC
ATACCAGAGTGGAACCCCAGCCAGACGATTAAACAGCCACCGCCACTGCCTCACGCCCCA
CAGCAACAGCCGTTGCCTCCACCTCCCGTCCAGCAGATGGACGCCTACCAGCAGCAGTAC
CACATCACAAGTGCAGTGCAGCCTCAGGTTCCCGTCGCATCGCTGACCCATGCCTACCTC
CAGATCCAGCAGCCTGGGCAGGCATGGCAGCAGCCTAGCAATCCTTGGTGGCCGGCGCAG
GGAGTTGCTGCCGCTGCCGCACAGCAACCACAGTATGGTGTAGTGCCTGGCAGTAGCGGC
GTCCAGGGCTACGACTATAGCAGTGCGAGTGGTATGGCATGGAGGCCGAGATAGGACACT
GTAAAATTCAGCTGGTTTTCTTCTGTAGCTGTGGTCTACCTGACTAGCGGGTGTTTTTTA
TTCCCTTTTTTTTGGTTAGCTGTTCATGTAAGTATATGAGTGGTGTTCGCCCGTACGAAG
GATCTAATCTGGATGGACTAGATAGTTGCTGGCTGTATCCGTCTATCC