Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053585_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:4:235372782:235376041:1 gene:Zm00001d053585 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-galactosidase

Sequence

ATGGAGTCCGTCGTGGGCAGTGGCGGCAAGCCATACGCTCACTGGGCGGCCCAGATGGCT
GTCGGGACCAACGCCGGCGTGCCGTGGGTGATGTGCAAGCAGGATGACGCCCCGGACCCC
GTGATCAACACTTGCAATGGCTTCTACTGCGACTACTTCACGCCAAACAACAAGCACAAG
CCGACCATGTGGACCGAAGCCTGGACTGGATGGTTCACCAAGTTCGGCGGCGCGGCGCCT
CACCGGCCGGTGGAGGACCTGGCCTTCGCCGTGGCACGGTTCGTTCAGAAAGGAGGCTCC
TTCGTGAACTACTACATGTACCATGGAGGAACGAACTTTGGGCGCACCGCCGGTGGCCCC
TTCATCGCGACCAGCTACGACTACGATGCCCCCATTGACGAGTTTGGTCTGCTCAGGCAA
CCGAAATGGGGTCACTTGAGGAACATGCACAGAGCTATCAAGCAGGCCGAGCCTGCGTTG
GTTTCTGGCGATCCAACGATACGATCTATTGGAAACTACGAAAAGGCATATGTCTTCAAG
TCAAAGAATGGAGCCTGTGCTGCGTTCCTGTCGAACTACCACGTTAAATCTGCTGTGAGG
ATCAGGTTTGACGGGCGTCACTATGACCTCCCGGCTTGGTCCATCAGCATTCTGCCCGAC
TGCAAAACCGCAGTCTTCAACACCGCGACGGTGAAGGAGCCGACTCTGCTGCCGAAGATG
AGCCCGGTGATGCATCGCTTCGCTTGGCAGTCCTACAGCGAGGACACGAACTCGCTGGAT
GACAGCGCGTTTGCAAGGGATGGCCTGATCGAGCAGCTCAGCTTGACATGGGACAAGTCG
GACTACCTGTGGTACACCACCCATGTCAACATTGGTTCCAACGAACGATTCCTCAAGTCT
GGCCAGTGGCCTCAGCTCAGTGTGTACTCTGCTGGACACTCCATGCAGGTGTTCGTCAAT
GGGAGGTCATATGGATCTGTTTACGGCGGCTACGACAACCCGAAGCTAACATTCAGTGGG
TATGTGAAGATGTGGCAGGGCAGCAACAAGATCTCCATTCTAAGCTCAGCAGTGGGCCTT
CCTAACAACGGTGACCATTTCGAGCTGTGGAACGTCGGCGTCCTCGGGCCAGTGACCCTC
TCCGGCCTGAACGAGGGGAAGAGGGACCTGAGCCATCAGAGATGGATATACCAGGTCGGC
CTGAAAGGCGAGTCGCTCGGCCTCCACACCGTGACCGGAAGCTCCGCCGTGGAATGGGCC
GGCCCCGGCGGCGGCACGCAGCCGCTGACTTGGCACAAGGCCCTGTTCAACGCGCCGGCG
GGGAGCGATCCGGTGGCCCTGGACATGGGCAGCATGGGCAAGGGCCAGGTGTGGGTGAAC
GGGCGCCACGCCGGGCGCTACTGGTCGTACAGGGCTCACTCCCGCGGCTGCGGGCGGTGC
AGCTACGCCGGGACGTACCGCGAGGACCAGTGCACGTCCAACTGCGGCGACCTCTCCCAG
AGATGGTACCACGTGCCGCGGTCGTGGCTGAAGCCGAGCGGGAACCTGCTGGTGGTGCTG
GAGGAGTACGGCGGCGACCTCGCCGGCGTCAGTCTCGCGACACGGACTACGTGA

Peptide Sequence

PEP ID

Zm00001d053585_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:4:235372782:235376041:1 gene:Zm00001d053585 transcript:Zm00001d053585_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-galactosidase

Sequence

MESVVGSGGKPYAHWAAQMAVGTNAGVPWVMCKQDDAPDPVINTCNGFYCDYFTPNNKHK
PTMWTEAWTGWFTKFGGAAPHRPVEDLAFAVARFVQKGGSFVNYYMYHGGTNFGRTAGGP
FIATSYDYDAPIDEFGLLRQPKWGHLRNMHRAIKQAEPALVSGDPTIRSIGNYEKAYVFK
SKNGACAAFLSNYHVKSAVRIRFDGRHYDLPAWSISILPDCKTAVFNTATVKEPTLLPKM
SPVMHRFAWQSYSEDTNSLDDSAFARDGLIEQLSLTWDKSDYLWYTTHVNIGSNERFLKS
GQWPQLSVYSAGHSMQVFVNGRSYGSVYGGYDNPKLTFSGYVKMWQGSNKISILSSAVGL
PNNGDHFELWNVGVLGPVTLSGLNEGKRDLSHQRWIYQVGLKGESLGLHTVTGSSAVEWA
GPGGGTQPLTWHKALFNAPAGSDPVALDMGSMGKGQVWVNGRHAGRYWSYRAHSRGCGRC
SYAGTYREDQCTSNCGDLSQRWYHVPRSWLKPSGNLLVVLEEYGGDLAGVSLATRTT

Transcript Sequence

Transcript ID

Zm00001d053585_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:235372782:235376041:1 gene:Zm00001d053585 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-galactosidase

Sequence

GGTGGAGAACGAGTTCGGGCCAATGGAGTCCGTCGTGGGCAGTGGCGGCAAGCCATACGC
TCACTGGGCGGCCCAGATGGCTGTCGGGACCAACGCCGGCGTGCCGTGGGTGATGTGCAA
GCAGGATGACGCCCCGGACCCCGTGATCAACACTTGCAATGGCTTCTACTGCGACTACTT
CACGCCAAACAACAAGCACAAGCCGACCATGTGGACCGAAGCCTGGACTGGATGGTTCAC
CAAGTTCGGCGGCGCGGCGCCTCACCGGCCGGTGGAGGACCTGGCCTTCGCCGTGGCACG
GTTCGTTCAGAAAGGAGGCTCCTTCGTGAACTACTACATGTACCATGGAGGAACGAACTT
TGGGCGCACCGCCGGTGGCCCCTTCATCGCGACCAGCTACGACTACGATGCCCCCATTGA
CGAGTTTGGTCTGCTCAGGCAACCGAAATGGGGTCACTTGAGGAACATGCACAGAGCTAT
CAAGCAGGCCGAGCCTGCGTTGGTTTCTGGCGATCCAACGATACGATCTATTGGAAACTA
CGAAAAGGCATATGTCTTCAAGTCAAAGAATGGAGCCTGTGCTGCGTTCCTGTCGAACTA
CCACGTTAAATCTGCTGTGAGGATCAGGTTTGACGGGCGTCACTATGACCTCCCGGCTTG
GTCCATCAGCATTCTGCCCGACTGCAAAACCGCAGTCTTCAACACCGCGACGGTGAAGGA
GCCGACTCTGCTGCCGAAGATGAGCCCGGTGATGCATCGCTTCGCTTGGCAGTCCTACAG
CGAGGACACGAACTCGCTGGATGACAGCGCGTTTGCAAGGGATGGCCTGATCGAGCAGCT
CAGCTTGACATGGGACAAGTCGGACTACCTGTGGTACACCACCCATGTCAACATTGGTTC
CAACGAACGATTCCTCAAGTCTGGCCAGTGGCCTCAGCTCAGTGTGTACTCTGCTGGACA
CTCCATGCAGGTGTTCGTCAATGGGAGGTCATATGGATCTGTTTACGGCGGCTACGACAA
CCCGAAGCTAACATTCAGTGGGTATGTGAAGATGTGGCAGGGCAGCAACAAGATCTCCAT
TCTAAGCTCAGCAGTGGGCCTTCCTAACAACGGTGACCATTTCGAGCTGTGGAACGTCGG
CGTCCTCGGGCCAGTGACCCTCTCCGGCCTGAACGAGGGGAAGAGGGACCTGAGCCATCA
GAGATGGATATACCAGGTCGGCCTGAAAGGCGAGTCGCTCGGCCTCCACACCGTGACCGG
AAGCTCCGCCGTGGAATGGGCCGGCCCCGGCGGCGGCACGCAGCCGCTGACTTGGCACAA
GGCCCTGTTCAACGCGCCGGCGGGGAGCGATCCGGTGGCCCTGGACATGGGCAGCATGGG
CAAGGGCCAGGTGTGGGTGAACGGGCGCCACGCCGGGCGCTACTGGTCGTACAGGGCTCA
CTCCCGCGGCTGCGGGCGGTGCAGCTACGCCGGGACGTACCGCGAGGACCAGTGCACGTC
CAACTGCGGCGACCTCTCCCAGAGATGGTACCACGTGCCGCGGTCGTGGCTGAAGCCGAG
CGGGAACCTGCTGGTGGTGCTGGAGGAGTACGGCGGCGACCTCGCCGGCGTCAGTCTCGC
GACACGGACTACGTGAACAAGGCAGGCGAACGACACGCGTTGCATCTAACTCGTACATGT
ATACTATACTCCGACGTGCGAGTATATACATCGATTGGTATTTGTTTAGTGAGGTGAGGC
CATGGCGAGGAGGAGCAAGCATACCGACCATGCCGTATTCGCGGACCGTATTTATACACA
CGACACCGTACATTACACTCGCGTGATAGCAATGGTTATACTGCAAGGGGAAGGTAAGGA
TGGCATTTAAGTGCAGAGCGGAGAGGGTGGGTGCCTGGGTGGTCTCCGGCCATCAGTGCG
GCGGCAGGACCGGCAGCTAGCTAGCTGCGCCGGCGCGGCACACACTTCGAGGCCAATTCA
ATTCAACTGTTTCAATTCATGTAACTGGCACTCTGGCAGCGGGTGTTTGCTGCTGCTTGC
TGTGTTTTTTTGAAGACGTGAACATGAAATACAAAACTGAGCTTGTTTTGTCCATGG