Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053555_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:4:233903535:233911270:-1 gene:Zm00001d053555 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat (LRR) family protein
Sequence

ATGGCCTCCGGCGAAGGTGTAGTTGATCAGCTGTACGAGGCGGCTGGCGGCGAGGCAGTG
GCCAAGATAGAGGGGGAGGCCAAGGTGGAGGCGGAGGCCAAGATGGAGACGGAGGAGCCG
GTGCTGTACCTCGACCTGACGAGCTACCAGCTGCACGATCTAAGCGAGGTGGAGATCCCA
CCCACGCTGGAGGAGGTCGACCTCACCGCCAACCGCCTCTCTTCTGTTGATCCTCGCATC
GGCCAACTCCCCCATCTCCGCAAGCTCTCATTCCGCCAGAACCTCCTCGACGATGACGCC
GTCGCGCCGCTCACGTCCTGGGAGGCTATTGCCGGGTTGAAGGAGTTCGTCATTAGAGAT
AACAAACTTACAAGGATTCCTGATGCTGGCATATTCAAGGATCTTCTGGTGTTCGATGTA
TCTTTCAATGAGATATCTTCTTTGACTGGTCTGTCCAAGGTTTCCATCAAATTGAAGGAA
CTTTATGTTTCAAAAAATGAAGTTGCAAAGATGGAAGAGCTTGAACATTTCCATGCGCTG
GAAATTCTTGAACTTGGTAGCAACAGATTACGGGTAATGGAAAATCTTGAAACCTTGACA
AATCTACAAGAACTGTGGTTGGGAAGAAATCGAATTCGAGCTGTCAACTTGTGTGGTTTG
AAGCTAATTAAGAAAATAAGTTTGCAAAGCAACAGACTGACTTCAATGCATGGGTTTCAG
GAATGTGCTGCATTAGAGGAGTTATACCTCAGCCATAATGGAATCCAAAAGATGGAAGGC
CTCTCTACTTTGCATAACCTCCGCATTTTGGATGTTTCAGCTAACAAGCTAACGACTATA
GAAAATATCGAAACCTTAACCAGGCTGGAGGACCTGTGGTTGAATGACAACCAAATACCA
TCTCTAGAGGGTATAGAGACAGCTTTGGCTGGTTCGCGGGAGAAGTTGACGACAATCTAT
CTCGAACGAAATCCCTGCAAAAACTCCAGATTACTCGTCGACGTTGAGGAAAATATTTCC
AAATCTCGAACAAATTGA

Peptide Sequence

PEP ID

Zm00001d053555_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:4:233903535:233911270:-1 gene:Zm00001d053555 transcript:Zm00001d053555_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat (LRR) family protein
Sequence

MASGEGVVDQLYEAAGGEAVAKIEGEAKVEAEAKMETEEPVLYLDLTSYQLHDLSEVEIP
PTLEEVDLTANRLSSVDPRIGQLPHLRKLSFRQNLLDDDAVAPLTSWEAIAGLKEFVIRD
NKLTRIPDAGIFKDLLVFDVSFNEISSLTGLSKVSIKLKELYVSKNEVAKMEELEHFHAL
EILELGSNRLRVMENLETLTNLQELWLGRNRIRAVNLCGLKLIKKISLQSNRLTSMHGFQ
ECAALEELYLSHNGIQKMEGLSTLHNLRILDVSANKLTTIENIETLTRLEDLWLNDNQIP
SLEGIETALAGSREKLTTIYLERNPCKNSRLLVDVEENISKSRTN

Transcript Sequence

Transcript ID

Zm00001d053555_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:233903535:233911270:-1 gene:Zm00001d053555 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat (LRR) family protein
Sequence

TTCGCTTCCCCGTTCTTCCAGAATCCTGTCGAGACCTGAATCCACCCTCACCCAGCGGTC
CCCATGGCCTCCGGCGAAGGTGTAGTTGATCAGCTGTACGAGGCGGCTGGCGGCGAGGCA
GTGGCCAAGATAGAGGGGGAGGCCAAGGTGGAGGCGGAGGCCAAGATGGAGACGGAGGAG
CCGGTGCTGTACCTCGACCTGACGAGCTACCAGCTGCACGATCTAAGCGAGGTGGAGATC
CCACCCACGCTGGAGGAGGTCGACCTCACCGCCAACCGCCTCTCTTCTGTTGATCCTCGC
ATCGGCCAACTCCCCCATCTCCGCAAGCTCTCATTCCGCCAGAACCTCCTCGACGATGAC
GCCGTCGCGCCGCTCACGTCCTGGGAGGCTATTGCCGGGTTGAAGGAGTTCGTCATTAGA
GATAACAAACTTACAAGGATTCCTGATGCTGGCATATTCAAGGATCTTCTGGTGTTCGAT
GTATCTTTCAATGAGATATCTTCTTTGACTGGTCTGTCCAAGGTTTCCATCAAATTGAAG
GAACTTTATGTTTCAAAAAATGAAGTTGCAAAGATGGAAGAGCTTGAACATTTCCATGCG
CTGGAAATTCTTGAACTTGGTAGCAACAGATTACGGGTAATGGAAAATCTTGAAACCTTG
ACAAATCTACAAGAACTGTGGTTGGGAAGAAATCGAATTCGAGCTGTCAACTTGTGTGGT
TTGAAGCTAATTAAGAAAATAAGTTTGCAAAGCAACAGACTGACTTCAATGCATGGGTTT
CAGGAATGTGCTGCATTAGAGGAGTTATACCTCAGCCATAATGGAATCCAAAAGATGGAA
GGCCTCTCTACTTTGCATAACCTCCGCATTTTGGATGTTTCAGCTAACAAGCTAACGACT
ATAGAAAATATCGAAACCTTAACCAGGCTGGAGGACCTGTGGTTGAATGACAACCAAATA
CCATCTCTAGAGGGTATAGAGACAGCTTTGGCTGGTTCGCGGGAGAAGTTGACGACAATC
TATCTCGAACGAAATCCCTGCAAAAACTCCAGATTACTCGTCGACGTTGAGGAAAATATT
TCCAAATCTCGAACAAATTGATTCAGATATCATAGCATGATAACTAGCTAATCCTTGCCC
AGATACTAAGGCAAAGAAGGCTTTGGGGTTCCCCGGAGAAGTCATTAACAGCAATCAACT
TGTGAGGCGAACAATAGACAGTAATTTGATCCTTAAAGTCTTCATTGCCAACTCTGCTCG
TGTTGTGGAAGACATTGGTTCGGAGTTTGTAGCCTTGAGCCGTTACGGGCTTAATATAGT
GATTGGTAACCAAATAATTAGAGGTGTACGAGGATTGTCACAGGATCCATATCCGTGTTA
CTAGTTTTAAGATGTTTCATTTCAGTTCTCTAGATTAGTGTTGATTTTTTTTTCTCTCCA
AATGAGGCTAGGAACAGCCAGCAGTTCATTTCTGTAAGTTGAATGCAGACATCTCTGTGT
TGCATATCAACTTGCAAGGATGTGTCAGCCTGTTGAGAACCC