Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053401_T027
CDS Infomation

cds chromosome:B73_RefGen_v4:4:230195865:230205289:1 gene:Zm00001d053401 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cyclic nucleotide-gated ion channel 1 isoform 1%3B Cyclic nucleotide-gated ion channel 1 isoform 2

Sequence

ATGGCTTTGGAGCTCTTTGGTACATTCTTTCCATCCAGCGAGAAGACACCTGTTGGAGAC
AAGCATGTATCAATCAGACTGGCTGTGATCCTACATCTTTGTACTGCGGCTCTCCAAAAT
GTTTCACAATCGACGAGTTTCTTTGAAAAACTATTCTATTGCTTTTGGTGGGGGCTACAA
AATCTAAGTTCCCTTGGCCAGAACATGAAAACAAGCACTAATACATTGGAGAATCTGTTT
GCTGTTTTTGTCTCGACATCGGGTTTGGTTCTATTTGCACTACTTATTGGTAATGTGCAG
ACCTATTTACAGTCAGCTTCTGTGCGTATCGAAGAAATGAGAGTGAAAAGGCGTGATACA
GAGCAGTGGATGGCACATAGGCTACTCCCTGAGAATCTAAAGGATCGGATTATGCGCCAC
GAACAATATAGGTGGCAAGAAACAAGAGGGGTTGACGAAGAGGGCCTTCTTAAAAATCTT
CCAAAGGATCTTAGAAGAGAGATAAAGAGACATCTTTGTTTGTCACTTCTCATGAAGGTT
CCAATGTTTGAAAACATGGATGAACAGCTGTTGGATGCCATGTGTGATCGTCTAAAGCCT
ATGCTGTACACAGAAGGAAGCTGCATCATTCGCGAAGGTGATCCAGTGAATGAAATGCTC
TTCATCATGAGAGGAACACTAGAGAGTACCACAACAAATGGTGGGCAAACTGGTTTCTTC
AACTCTAATGTTCTAAAAGGTGGAGACTTCTGTGGTGAAGAGCTCCTCACGTGGGCCCTT
GACCCCACTTCAGCTTCAAATCTTCCTGGCTCAACTAGGACAGTGAAGACGTTGTCTGAA
GTCGAAGCTTTTGCTCTGAGGGCTGACGACTTGAAGTTTGTTGCCACACAATTTAGGAGG
CTCCACAGCAAACAACTTCAGCATACCTTCCGGTTTTACTCACAGCAATGGAGGACCTGG
GCTGCTTGCTTCATACAGGCAGCTTGGCACAGATACTGTAGGAAGAAGCTGGAAGAGGCT
TTATATGAGAAGGAGAAGAGGTTACAAGCAGCAATTGTAAGTGATGGCACTACTTCGCTC
AGTCTCGGTGCAGCGCTCTATGCTTCACGTTTTGCTGGCAACATGATGCGGATCTTACGG
AGAAATGCCACCAGAAAGGCCCGTTTGCAGGAAAGAGTACCTGCAAGACTGTTGCAAAAG
CCAGCAGAACCCAACTTCTTCGCTGAAGATAGCTGA

Peptide Sequence

PEP ID

Zm00001d053401_P027
PEP Infomation

pep chromosome:B73_RefGen_v4:4:230195865:230205289:1 gene:Zm00001d053401 transcript:Zm00001d053401_T027 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cyclic nucleotide-gated ion channel 1 isoform 1%3B Cyclic nucleotide-gated ion channel 1 isoform 2

Sequence

MALELFGTFFPSSEKTPVGDKHVSIRLAVILHLCTAALQNVSQSTSFFEKLFYCFWWGLQ
NLSSLGQNMKTSTNTLENLFAVFVSTSGLVLFALLIGNVQTYLQSASVRIEEMRVKRRDT
EQWMAHRLLPENLKDRIMRHEQYRWQETRGVDEEGLLKNLPKDLRREIKRHLCLSLLMKV
PMFENMDEQLLDAMCDRLKPMLYTEGSCIIREGDPVNEMLFIMRGTLESTTTNGGQTGFF
NSNVLKGGDFCGEELLTWALDPTSASNLPGSTRTVKTLSEVEAFALRADDLKFVATQFRR
LHSKQLQHTFRFYSQQWRTWAACFIQAAWHRYCRKKLEEALYEKEKRLQAAIVSDGTTSL
SLGAALYASRFAGNMMRILRRNATRKARLQERVPARLLQKPAEPNFFAEDS

Transcript Sequence

Transcript ID

Zm00001d053401_T027
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:230195865:230205289:1 gene:Zm00001d053401 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cyclic nucleotide-gated ion channel 1 isoform 1%3B Cyclic nucleotide-gated ion channel 1 isoform 2

Sequence

GAAGAGCATCTGTTGTGGCTCTGGTTCTGCCAAGAGCTTTACCGAATACCAGTGAACAAA
ACAGCTCCAGCCAGGGAGCTAGCAGAAGCCCTGGAAAAAAAGAACTACACGCATGGAGCT
GGAAATTATGGCTTCCAACAGCTCTGTTTGTTTATCTGCTTCACAATGCATAAATTTTGA
AAGAAAGCAATTTTCTTCCAAAATATGTACTGATTTTAAATCCATTTTTTTTGAATTTTT
GAAAAAACCCCAACATTCTCTCCTTTAAAATTGGAACATTGGATTTTTTCTCTTGCTTGG
AACATTTTTCTTTGTTTTCACACAAAGTGTGGTGCAATGTAGCAGGACGTTCTAGACATT
ATACACCTATTCATTCTAGAAAATACAAGAAAAGTCATTCTGGCAAGCATTTTCCAAAGA
GCTTCAGCTCCACCAGAGAAGGTTCTTTTCTGAAGGAGCTAGAGCTGGAGCTGTTTTGGG
AGGAATTGGAGCCCTGCCAAACGAGTCCTAAATAGGGTAGTATCAGAAAAAGGGCATAAC
ATCTTTGGCTTGTTAAAGGACAGAACAGCAGGAGCCTTTTCATTCCTGGGGAACTCTTCA
CATTCTGAAGCCCTAAACAAATTAGGCCTAGGGGAGAAGTCAAAAACAAAAGTTCTTGAT
CCTCAAGGGCCATTTTTGCAGAGATGGAACAAGATATTTGTGATATCATGTCTTTTTGCA
GTTTTTGTGGACCCATTGTTCTTGTATGTCCCAGTAATTGATGGTGGCAACAACTGCCTG
TACTTGGACAAGAAGTTAGAGACCACAGCAAAGTGTTCGGTCGGGGTGCCTTGGTTAAGG
ACACATTTGCAATAGCAAAGCGATATCTATCAACATTGTTCCTGGTGGATTTCTTAGCGG
TTCTGCCCCTCCCTCAGGGTGAGGGGTTGGGACAAAACTATCCCAGTGTTGTCCCTCAAA
ATTGGAGGGACGAGAGAGGACGCCAGAGGACGTCCCTGTCTTGCCTGTCCCCGGATGTCC
CGCAACCAAACACATCCTCAATGAACTTCAATGCACCAAAGGCACATAACACATGCATGC
ATAAGCCATCGGTGCAACTGTGCTACAAAATGGAAATATAGAATAGGTGTTTGTGTTGGT
GGTGCTGCCTAAGCTCCAAGGTCCTGAAATTATGAAGGCAAAAATTAGACAGCATGGGCT
GGTGCTGCTTTCAACCTTATAATTTATATGCTTGCCAGTCATGGCTTTGGAGCTCTTTGG
TACATTCTTTCCATCCAGCGAGAAGACACCTGTTGGAGACAAGCATGTATCAATCAGACT
GGCTGTGATCCTACATCTTTGTACTGCGGCTCTCCAAAATGTTTCACAATCGACGAGTTT
CTTTGAAAAACTATTCTATTGCTTTTGGTGGGGGCTACAAAATCTAAGTTCCCTTGGCCA
GAACATGAAAACAAGCACTAATACATTGGAGAATCTGTTTGCTGTTTTTGTCTCGACATC
GGGTTTGGTTCTATTTGCACTACTTATTGGTAATGTGCAGACCTATTTACAGTCAGCTTC
TGTGCGTATCGAAGAAATGAGAGTGAAAAGGCGTGATACAGAGCAGTGGATGGCACATAG
GCTACTCCCTGAGAATCTAAAGGATCGGATTATGCGCCACGAACAATATAGGTGGCAAGA
AACAAGAGGGGTTGACGAAGAGGGCCTTCTTAAAAATCTTCCAAAGGATCTTAGAAGAGA
GATAAAGAGACATCTTTGTTTGTCACTTCTCATGAAGGTTCCAATGTTTGAAAACATGGA
TGAACAGCTGTTGGATGCCATGTGTGATCGTCTAAAGCCTATGCTGTACACAGAAGGAAG
CTGCATCATTCGCGAAGGTGATCCAGTGAATGAAATGCTCTTCATCATGAGAGGAACACT
AGAGAGTACCACAACAAATGGTGGGCAAACTGGTTTCTTCAACTCTAATGTTCTAAAAGG
TGGAGACTTCTGTGGTGAAGAGCTCCTCACGTGGGCCCTTGACCCCACTTCAGCTTCAAA
TCTTCCTGGCTCAACTAGGACAGTGAAGACGTTGTCTGAAGTCGAAGCTTTTGCTCTGAG
GGCTGACGACTTGAAGTTTGTTGCCACACAATTTAGGAGGCTCCACAGCAAACAACTTCA
GCATACCTTCCGGTTTTACTCACAGCAATGGAGGACCTGGGCTGCTTGCTTCATACAGGC
AGCTTGGCACAGATACTGTAGGAAGAAGCTGGAAGAGGCTTTATATGAGAAGGAGAAGAG
GTTACAAGCAGCAATTGTAAGTGATGGCACTACTTCGCTCAGTCTCGGTGCAGCGCTCTA
TGCTTCACGTTTTGCTGGCAACATGATGCGGATCTTACGGAGAAATGCCACCAGAAAGGC
CCGTTTGCAGGAAAGAGTACCTGCAAGACTGTTGCAAAAGCCAGCAGAACCCAACTTCTT
CGCTGAAGATAGCTGAACTTGTACCCTGTAGCAAGCAGGGATTCATGGTCCAACCGGTGA
AGTTTGTGCAGAAGTTAAGATTGGATGCTGTAGATAGACAGATCAGGTGCTCTAAAGCCG
TCTGGTTTAAATCACCTAATTCGCGAAAAGGCCTGGTCCGAGTTAGATTCTCCGTTGAAA
TAAATTTGAAGCTGACGTTAAAAAAAAAATCCGCTTTTGCTCCACGTTAAATTCTGGCTT
CCATAGTGGTCGGACTAGGGTGCTGAGATAAGGGTATTGAGATTTTTTAGATCTGTGTGA
AAAGATTTTCTGTAACGTAATATCTGAAGGCTGTCTTATCCTCTGTAGGTTATTTTAAAA
AAAACACGTATATTTCGATTG