Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053143_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:4:215990888:215992543:-1 gene:Zm00001d053143 gene_biotype:protein_coding transcript_biotype:protein_coding description:Amino acid permease 2
Sequence

ATGGTGGCGAGCAAGGCCGCCCCGTTCGACGAGGTGTCCTCGGTGGAGGCGGGGGCCTAC
GGGGGCCGCGACGACGACGGGCGGCCGCGCCGGACGGGCACGGTGTGGACGGCCAGCGCC
CACATTATCACGGCCGTCATCGGCTCCGGGGTGCTCTCGCTGGCGTGGGCCATCGCGCAG
CTGGGCTGGGCCGCGGGCCCCGCCGTCATGCTGCTCTTCGCCGTCGTCATCTACTACACC
TCCACGCTGCTCGCCGAGTGCTACCGCTCCGGCGACCCAGTGGCGGGGAAGCGCAACTAC
ACCTACATGGACGCCGTCCGCGCAAGCCTCGGCGGCGCCAAGGTCAGGCTCTGCGGCGCC
ATCCAGTACGCCAACCTCTTCGGCGTCGCAATCGGATACACAATCGCCGCATCCATCAGC
ATGCTCGCCATCAAGAGGGCGGACTGCTTCCACGCCAAGGGCCACAAGCACGCGTGCCGC
AGCTCCAGCAACCCCTACATGATCCTCTTCGGCGTCGCCGAGGTCGTCTTCTCGCAGATA
CCGGACTTCGACCAGATTTGGTGGCTCTCCATCGTCGCCGCCGTCATGTCCTTCACCTAC
GCCACCATCGGCCTCGTCCTCGGCATCATGCAGACCGTCGCCAACGGGGGCTTCCAGGGC
AGCCTCACCGGGATCAGCATCGGCGCCGGCGTCACCCCGACGGAGAAGGTCTGGCGGAGC
CTGCAGGCCTTCGGCAACATCGCCTTCGCCTATTCCTACTCCATCATCCTCATCGAGATC
CAGGACACGGTCAAGGCGCCGCCGCCATCCGAGGCCAAGGTGATGAAGAGGGCGACCATG
GTGAGCGTGGCCACCACAACGGTGTTCTACATGCTGTGCGGGTGCATGGGCTACGCCGCC
TTCGGCGACGCCGCGCCGGACAACCTCCTCACCGGCTTCGGCTTCTACGAGCCCTTCTGG
CTGCTGGACATCGCCAACGTCGCCATCGTCGTGCACCTCGTCGGCGCCTACCAGGTCTTC
TGCCAGCCGCTCTTCGCCTTCGTCGAGAAGTGGGCAGCGGCCACGTGGCCCGACAGCGCC
TTCATCGCCCGGGAGTTCCGCGTGGGCCCCTTCGCGCTCAGCCTGTTCCGCCTCACCTGG
CGCACGGCGTTCGTGTGCCTCACCACCGTCGCCGCCATGCTGCTCCCCTTCTTCGGCGAC
GTCGTCGGCCTGCTCGGCGCCGTCTCCTTCTGGCCGCTCACCGTCTACTTCCCCATCGAG
ATGTACGTCGTGCAGCGCGCCGTGCGCAGGTGGAGCACGCACTGGATCTGCCTCCAGATG
CTCAGCGCTGCGTGCCTCCTCGTGTCCGTCGCCGCCGCAGCGGGCTCCATCGCCGACGTC
ATCGGCGCGCTCAAGGTGTACCGCCCGTTCAGCGGC

Peptide Sequence

PEP ID

Zm00001d053143_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:4:215990888:215992543:-1 gene:Zm00001d053143 transcript:Zm00001d053143_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Amino acid permease 2
Sequence

MVASKAAPFDEVSSVEAGAYGGRDDDGRPRRTGTVWTASAHIITAVIGSGVLSLAWAIAQ
LGWAAGPAVMLLFAVVIYYTSTLLAECYRSGDPVAGKRNYTYMDAVRASLGGAKVRLCGA
IQYANLFGVAIGYTIAASISMLAIKRADCFHAKGHKHACRSSSNPYMILFGVAEVVFSQI
PDFDQIWWLSIVAAVMSFTYATIGLVLGIMQTVANGGFQGSLTGISIGAGVTPTEKVWRS
LQAFGNIAFAYSYSIILIEIQDTVKAPPPSEAKVMKRATMVSVATTTVFYMLCGCMGYAA
FGDAAPDNLLTGFGFYEPFWLLDIANVAIVVHLVGAYQVFCQPLFAFVEKWAAATWPDSA
FIAREFRVGPFALSLFRLTWRTAFVCLTTVAAMLLPFFGDVVGLLGAVSFWPLTVYFPIE
MYVVQRAVRRWSTHWICLQMLSAACLLVSVAAAAGSIADVIGALKVYRPFSG

Transcript Sequence

Transcript ID

Zm00001d053143_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:215990888:215992543:-1 gene:Zm00001d053143 gene_biotype:protein_coding transcript_biotype:protein_coding description:Amino acid permease 2
Sequence

GGCTAGCCGATCAACAACACCACTAGCCTCTCCTATCCTAGCTAGCTAGCTTCCACCGGC
CGGAAGAAAAAAAAAATGGTGGCGAGCAAGGCCGCCCCGTTCGACGAGGTGTCCTCGGTG
GAGGCGGGGGCCTACGGGGGCCGCGACGACGACGGGCGGCCGCGCCGGACGGGCACGGTG
TGGACGGCCAGCGCCCACATTATCACGGCCGTCATCGGCTCCGGGGTGCTCTCGCTGGCG
TGGGCCATCGCGCAGCTGGGCTGGGCCGCGGGCCCCGCCGTCATGCTGCTCTTCGCCGTC
GTCATCTACTACACCTCCACGCTGCTCGCCGAGTGCTACCGCTCCGGCGACCCAGTGGCG
GGGAAGCGCAACTACACCTACATGGACGCCGTCCGCGCAAGCCTCGGCGGCGCCAAGGTC
AGGCTCTGCGGCGCCATCCAGTACGCCAACCTCTTCGGCGTCGCAATCGGATACACAATC
GCCGCATCCATCAGCATGCTCGCCATCAAGAGGGCGGACTGCTTCCACGCCAAGGGCCAC
AAGCACGCGTGCCGCAGCTCCAGCAACCCCTACATGATCCTCTTCGGCGTCGCCGAGGTC
GTCTTCTCGCAGATACCGGACTTCGACCAGATTTGGTGGCTCTCCATCGTCGCCGCCGTC
ATGTCCTTCACCTACGCCACCATCGGCCTCGTCCTCGGCATCATGCAGACCGTCGCCAAC
GGGGGCTTCCAGGGCAGCCTCACCGGGATCAGCATCGGCGCCGGCGTCACCCCGACGGAG
AAGGTCTGGCGGAGCCTGCAGGCCTTCGGCAACATCGCCTTCGCCTATTCCTACTCCATC
ATCCTCATCGAGATCCAGGACACGGTCAAGGCGCCGCCGCCATCCGAGGCCAAGGTGATG
AAGAGGGCGACCATGGTGAGCGTGGCCACCACAACGGTGTTCTACATGCTGTGCGGGTGC
ATGGGCTACGCCGCCTTCGGCGACGCCGCGCCGGACAACCTCCTCACCGGCTTCGGCTTC
TACGAGCCCTTCTGGCTGCTGGACATCGCCAACGTCGCCATCGTCGTGCACCTCGTCGGC
GCCTACCAGGTCTTCTGCCAGCCGCTCTTCGCCTTCGTCGAGAAGTGGGCAGCGGCCACG
TGGCCCGACAGCGCCTTCATCGCCCGGGAGTTCCGCGTGGGCCCCTTCGCGCTCAGCCTG
TTCCGCCTCACCTGGCGCACGGCGTTCGTGTGCCTCACCACCGTCGCCGCCATGCTGCTC
CCCTTCTTCGGCGACGTCGTCGGCCTGCTCGGCGCCGTCTCCTTCTGGCCGCTCACCGTC
TACTTCCCCATCGAGATGTACGTCGTGCAGCGCGCCGTGCGCAGGTGGAGCACGCACTGG
ATCTGCCTCCAGATGCTCAGCGCTGCGTGCCTCCTCGTGTCCGTCGCCGCCGCAGCGGGC
TCCATCGCCGACGTCATCGGCGCGCTCAAGGTGTACCGCCCGTTCAGCGGCTA