Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053109_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:4:214211978:214218490:-1 gene:Zm00001d053109 gene_biotype:protein_coding transcript_biotype:protein_coding description:DUF724 domain-containing protein 2
Sequence

ATGCAAGCAGGCCCACAAACCCACATATGCTTCCCAAACTTTGATCCCTTAATCTTCAAT
CAAGATGGTGGAGTACATCATAGGATCCCTATGTGGGGGGTCAGCTGGCGGGAGATTGTG
TTGGGAGTGGGGGGTCAGCATGAACTTCATTTTGTGATAGATTCATTGAGACAGACTAAC
TTGAGGTGGCATTCTAAGTCTGGAGAAAGTCCAATCTCTCCAGTTGATTTGACATCTAGT
GATGAAGAACACAGCCATGATCCTGATTCTTCTTCCATAAAAAAGTCTAGGAAAAAACTA
AAGCAGCTAGATGCCACATTAGCTGAAGGTTCTGAACACGCTTCAGTCTCTGAGATGGAC
ATTCCTTTGTCAGCTATGTGCAAGTCACCAGAAAGCACACATTCGCCGAATTCTTTGCTC
TCTGAGAAGAGCAGTCCTCAAGGTTCACATGTGATAGTGAATTTGGTTCCAATGAATGGA
CTTCATTGTGCTTCTTCAGGGCATTCAGCACCAGTGGACAACCAAGCAATCCTGTCTGAT
ATGGGTGTTTTTGATGGTGAGCTTCATGAATCTGTATCTGGGAGAAGCGTTGATGCATAT
GATATGCTTCCCATTGCTGAACTAAGAAAGAAAATGGCTTCAGCTAGAAGAAATTGTGCT
GTCCAACATACAGAGGAACAACATGTGAAATCGCTCAGAGTGAAGAAATGTATATCGAAT
AGTAAAGACAAAAAAACGCGCCCTATTCAAGAGCTTATGGGAGAAATTCAGTTGAAGGGA
AACAAGAATTTCTCTAGGGACTTTGTTTTAGCTTTGGGCGTCTCTAGGGATGGCCCGACT
ACTTTATCTCCAGATAGACTGGTGTCAATAGGGCCAAAAAGGTGCTCAAGTACAAAGGTT
CTTGCCTGTAAGAAATTGGCTAAGAGGAGAGGATCCAAAGAACTGTGCAGTCCAAATAGC
TCATTGGATGTGACTAGGACTGACCAGCAGGGAGGAAGAAAGGAAGTGGCAGAAGCAATG
AAAGAATGTTCCTTAGCATTGGAGTGTCCGAAATCTGATGCTCAAGGGCAGCTTGACAGA
ACTTTGGAGGATGCAAAGAATATAACTGAATTATCAAATCAGGAGAACCTCTTATCCATG
CTGCCTCCTGGCTTTAAATCAGTGTCTAACAGGAAAGGTACTAACATACATGATGCTCAA
CTTGGGGAAGAACCAGCGGTTATGACCAACAACAGCCTTATTGAACCGAATGGAAATGAT
GACATGTGCACAGACCATGCTGCTACTACCAAGTTAGCTGAAAACTACAATGTGATGGAA
ACAGCTATCATGTCTATTGATTGTCCGGCTCAACAACCCTGTGGGGAAGTGGATGAGAGG
TCAGTTTTAGGTCTTAAGAATGCTGGGAGTACACAGTGCATCATCGACAGTTCTCCATCG
AGTGAGAGCTTGTTGCCTTCACCGCAGGCTTTGTTCGTCAAGAGCTCACCTGTGTGGCAT
ATAGTTGAAGCAATGCATGTGTTTAAAGAGTTACCTCAACAACCACATTTCATTCCACTC
CAAGAAGTCCCCCCGACACTACGCGAAGGAATGGCATTAGGTATGATGGTGTCATTCGCG
GACTTGGTGAAGGTTACAATGGAAGCAAGCATAGGCAACGACATGGAATGGTTTGAGGAC
AAGATCAGGACAATCTCCCATCTAGAGGCAAATGGATTTAGTGTGCAATCTATACAGAGC
GCCATGACCGAAATGGTCAAGGTCAAAACTGAGCACACCAGTTATCATTGCGAAATCGGC
AAGCTGAGTTCAAAGTTAGTGGAGAATATGGCTTCCTCCTCCAGAGCCGGTGCACTGCTT
GATGAAAAAGATGAAGCTGCAGCACGGCTCGAGGAAGAACTTGTGAGTATTCGCCAAGAA
AGCCAGAAAATCGCAAAGGAGAAGGAAAAAATAGATGCAGAGGTCGTGAGTATCAAGACA
GCATGTAGCGGGTATGAGGATTTGTGCAGCGGTGTGGAACGCAAGTTTAAGGAAGTCTTG
GCTGGGCTGCAGCGGAAGAGGCTAACCTGA

Peptide Sequence

PEP ID

Zm00001d053109_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:4:214211978:214218490:-1 gene:Zm00001d053109 transcript:Zm00001d053109_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:DUF724 domain-containing protein 2
Sequence

MQAGPQTHICFPNFDPLIFNQDGGVHHRIPMWGVSWREIVLGVGGQHELHFVIDSLRQTN
LRWHSKSGESPISPVDLTSSDEEHSHDPDSSSIKKSRKKLKQLDATLAEGSEHASVSEMD
IPLSAMCKSPESTHSPNSLLSEKSSPQGSHVIVNLVPMNGLHCASSGHSAPVDNQAILSD
MGVFDGELHESVSGRSVDAYDMLPIAELRKKMASARRNCAVQHTEEQHVKSLRVKKCISN
SKDKKTRPIQELMGEIQLKGNKNFSRDFVLALGVSRDGPTTLSPDRLVSIGPKRCSSTKV
LACKKLAKRRGSKELCSPNSSLDVTRTDQQGGRKEVAEAMKECSLALECPKSDAQGQLDR
TLEDAKNITELSNQENLLSMLPPGFKSVSNRKGTNIHDAQLGEEPAVMTNNSLIEPNGND
DMCTDHAATTKLAENYNVMETAIMSIDCPAQQPCGEVDERSVLGLKNAGSTQCIIDSSPS
SESLLPSPQALFVKSSPVWHIVEAMHVFKELPQQPHFIPLQEVPPTLREGMALGMMVSFA
DLVKVTMEASIGNDMEWFEDKIRTISHLEANGFSVQSIQSAMTEMVKVKTEHTSYHCEIG
KLSSKLVENMASSSRAGALLDEKDEAAARLEEELVSIRQESQKIAKEKEKIDAEVVSIKT
ACSGYEDLCSGVERKFKEVLAGLQRKRLT

Transcript Sequence

Transcript ID

Zm00001d053109_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:214211978:214218490:-1 gene:Zm00001d053109 gene_biotype:protein_coding transcript_biotype:protein_coding description:DUF724 domain-containing protein 2
Sequence

GAATCCCGTTCGATACTTCGATCCCAATGGTGGCCTCCTCCGCCAATGCGCCACCGGGCG
CCGGCGCACGGAGGCCGCGCAGCCGCCCCCGCGGGAGCGTGCGCTCGCGGAGCCTGAGGT
GGAGCACGCCTCCGCGCAGCCCCCTGCCGTCGTCGTTGTCCGCGTCGCCCCGGCGGCATT
GCTCGCTCCCCGCGCTGGACCCGATCACGCCCTTACCTGTCGGCACCGAGGTCGAGGTCC
GCGTCGACGACGACGGCTTCTACGGCTCATGGTTCGAGGCCACCGTCCTCGACTTCGCGC
CCGCGCGCGGCTACCGCCACCCTGCGCGGTACACCGTCAAGTACGTGCACCTCCTCGCCG
AGGCCGACGACGAAGGCGTCCTCGCGGAGCCCTTCGCGCCGTCCCACATCCGCCCGCGGC
CGCCGCTCCCGTCTTCGCCGCCGCGCTTCCGCCCCCACCACATCGTCGAGGCGTTCCACA
ACGAGGGGTGGTGGTCGGGCATCGTCGTGTCCGCCGCCGGAGCCGGGGTCACCGTCGCGT
TCCCCGTCACCCGTGAGGTCATCGAGTTCCCGTCGGGCCTCGTCCGCCCCCGCTGCGACT
ACGTTGACGGTGACTGGATCCCGTCCCGGGTCGCGATGGTTGTCCGCCCCAGCCGCACCG
TCAGGGTCTACGAGGTCGGGGACAAGGTCGAGGTGGTGAGGAACCGGGACGTGTACGGGG
ACTCCTGGTTTCCCGCCACGGTGAAGGTCGTCATCGACAACCTCAGCTACGTCGTCGAGT
ACTTTGATCTGGAGGAGGAGGAGGGCGGGCTGGAGAAGGCCACCGAGTATCTGCATTGGC
GGTTCATCAGGCCGGCTTTTGAGCATACACCGGGGGAGGGTGAGTTCCAGCTCCAGCCTG
GTGATGCCGTGGAGGCCTACTGTGATGGGGCATGGTCACCGGGAGTCGTCCATAGGGTCG
TCAGCGAGGGTGAGTATGACATCAGTATTGTTGGCAAGAAGGCGGAACTGCTGGTGACCA
AGGTGGTGGAATTGCTCAAGCCGCGGTATAAGTGGAATGGCAACCGATGGAGAATTGCAA
CTGCTAAGGTACTGCAACAAACCTGTTTATCATAGCGGTCCTTGTTAGCTCATTTCTGAT
TATCTGCTGTTGTAGTATTGAGAGGTGCAGATACTATATGATATACAGATTTGTTGGGAT
TGATCCTTTCTGACTTCCCTAACTTAGTTCCTTCATTTTCTCATTTTAGGACATGTCTGA
GGTAGGTACAGTAATTAATCCAATTAAGTTCATCATTGACACAGTGATATTGCGCTTCAT
ATGATTTGTAGTACTCTCCTGCTTCAGCCAAATGGCTTTTCGTCTCATTGAGCTTGTGGC
TTTGTCTGTGAAATCATTATTTGTTTTATGGGTAGGATGGAGTTTCCAGTACACGATTAA
GTTCAGGCAAGCTGTTTCCTTTGTATTTTGTGTGTTTGGGCTGCTAATTTTGTATGATTA
GGACCCTGAATACAAGTGTCTTCAAACATTTGTACATAAGTTCCTCGAGGAGTAGGAATG
AACACGGATGGGAATGAGTGGGAAAACACTCAACCATTTCTATCTTCACATTTAGTCACC
AAGAATGGGAATGGGAGCGGGAACAGGATAGCCCGGAACAGGGATGACATGGGATATACA
CAGTGTTCTAAATAACGGGTTATAACATTTAGTGGAAGCCTGCTCAGCCGCTATAGCACA
CTATTTAGTATAATGAGTGTTGTAGTGGGCTAGTGGCACCTAGTGCGAGGCGCTATAGAC
CACTATTTAGAATACTGGATATACAGATAGAAGAAAACAAACAAATATCGAAATTCAACA
GAAACAGAAGGTTACATAACAGACATTGATTCTAGATTTCACACTATCACAGCCTATGTT
CAGAAATCACAAGTTCACACGCAGCACTCACTATCTCACAAATCTCAATGGTCACCACTG
CGCTCAATACTTGGACAGCAGCAGTTCAAACTTCACAGTACTGTATGGCTGCATCAAACC
ACACTCAACACCACCAGTTCAGTGCACAGTAGCAGCAGTTCACAAGTTCAAAAAAAGTCT
CAAACACATCAACTACTAGTAGAGAACTTATGAAAGAAAGTGAATCGAAATCGAGAAACA
GCAGAGTTAATTATTGATTAGAAGTGTAGCAGATGAAGTGATTAGTTGAAAACTAATGGG
CATGGATTGCCTTGGTTGTCACTGCCTACATGCAAGGCACATGAGCAGGCTGTTCTCGTT
GCACCCGTGGGCTGTGGTACAACATGCTGCCCTTCTTTCAAATACCTTCCATCTGCAGTC
ATACGTGAAACACGCAATGAACCTGGATCACCTGCAGTCGCCTAGCGCTTTTTTGAACCT
TGGAGTAGAGAATGCGGATTTTACGGCTTCCGTCCTGAAATATAAGGTATTTGGTTGTCC
CAAGTCAAATTATCCTGAGTTTGACCAAGTTAATTATCCCGCATCAAAAAGCTAACATAT
GAAACTGCATTTCATAATGAACCTATTGATGCTGGTTCAATGTCATAAATATTGTTGTTA
TTTGCTATAAACTTAGTCAAACTTATGATACTTTGACTTTCGGCAAACTTTGATCAAGGA
TGCAAGCAGGCCCACAAACCCACATATGCTTCCCAAACTTTGATCCCTTAATCTTCAATC
AAGATGGTGGAGTACATCATAGGATCCCTATGTGGGGGGTCAGCTGGCGGGAGATTGTGT
TGGGAGTGGGGGGTCAGCATGAACTTCATTTTGTGATAGATTCATTGAGACAGACTAACT
TGAGGTGGCATTCTAAGTCTGGAGAAAGTCCAATCTCTCCAGTTGATTTGACATCTAGTG
ATGAAGAACACAGCCATGATCCTGATTCTTCTTCCATAAAAAAGTCTAGGAAAAAACTAA
AGCAGCTAGATGCCACATTAGCTGAAGGTTCTGAACACGCTTCAGTCTCTGAGATGGACA
TTCCTTTGTCAGCTATGTGCAAGTCACCAGAAAGCACACATTCGCCGAATTCTTTGCTCT
CTGAGAAGAGCAGTCCTCAAGGTTCACATGTGATAGTGAATTTGGTTCCAATGAATGGAC
TTCATTGTGCTTCTTCAGGGCATTCAGCACCAGTGGACAACCAAGCAATCCTGTCTGATA
TGGGTGTTTTTGATGGTGAGCTTCATGAATCTGTATCTGGGAGAAGCGTTGATGCATATG
ATATGCTTCCCATTGCTGAACTAAGAAAGAAAATGGCTTCAGCTAGAAGAAATTGTGCTG
TCCAACATACAGAGGAACAACATGTGAAATCGCTCAGAGTGAAGAAATGTATATCGAATA
GTAAAGACAAAAAAACGCGCCCTATTCAAGAGCTTATGGGAGAAATTCAGTTGAAGGGAA
ACAAGAATTTCTCTAGGGACTTTGTTTTAGCTTTGGGCGTCTCTAGGGATGGCCCGACTA
CTTTATCTCCAGATAGACTGGTGTCAATAGGGCCAAAAAGGTGCTCAAGTACAAAGGTTC
TTGCCTGTAAGAAATTGGCTAAGAGGAGAGGATCCAAAGAACTGTGCAGTCCAAATAGCT
CATTGGATGTGACTAGGACTGACCAGCAGGGAGGAAGAAAGGAAGTGGCAGAAGCAATGA
AAGAATGTTCCTTAGCATTGGAGTGTCCGAAATCTGATGCTCAAGGGCAGCTTGACAGAA
CTTTGGAGGATGCAAAGAATATAACTGAATTATCAAATCAGGAGAACCTCTTATCCATGC
TGCCTCCTGGCTTTAAATCAGTGTCTAACAGGAAAGGTACTAACATACATGATGCTCAAC
TTGGGGAAGAACCAGCGGTTATGACCAACAACAGCCTTATTGAACCGAATGGAAATGATG
ACATGTGCACAGACCATGCTGCTACTACCAAGTTAGCTGAAAACTACAATGTGATGGAAA
CAGCTATCATGTCTATTGATTGTCCGGCTCAACAACCCTGTGGGGAAGTGGATGAGAGGT
CAGTTTTAGGTCTTAAGAATGCTGGGAGTACACAGTGCATCATCGACAGTTCTCCATCGA
GTGAGAGCTTGTTGCCTTCACCGCAGGCTTTGTTCGTCAAGAGCTCACCTGTGTGGCATA
TAGTTGAAGCAATGCATGTGTTTAAAGAGTTACCTCAACAACCACATTTCATTCCACTCC
AAGAAGTCCCCCCGACACTACGCGAAGGAATGGCATTAGGTATGATGGTGTCATTCGCGG
ACTTGGTGAAGGTTACAATGGAAGCAAGCATAGGCAACGACATGGAATGGTTTGAGGACA
AGATCAGGACAATCTCCCATCTAGAGGCAAATGGATTTAGTGTGCAATCTATACAGAGCG
CCATGACCGAAATGGTCAAGGTCAAAACTGAGCACACCAGTTATCATTGCGAAATCGGCA
AGCTGAGTTCAAAGTTAGTGGAGAATATGGCTTCCTCCTCCAGAGCCGGTGCACTGCTTG
ATGAAAAAGATGAAGCTGCAGCACGGCTCGAGGAAGAACTTGTGAGTATTCGCCAAGAAA
GCCAGAAAATCGCAAAGGAGAAGGAAAAAATAGATGCAGAGGTCGTGAGTATCAAGACAG
CATGTAGCGGGTATGAGGATTTGTGCAGCGGTGTGGAACGCAAGTTTAAGGAAGTCTTGG
CTGGGCTGCAGCGGAAGAGGCTAACCTGATGCGCAAGGTGTTGATGTCATTTCGCTGCTT
CAAAGTTCTAATTCTGACCACTGTTTCTGCTTTTGGGCTGTAGGTCATCTATGTATCACG
GTAGGTTCAGATCGATGTGCTGTGCTTAGTTTGTGCAAGTCATTCGGTACCTTTTATATA
TCTGTATGGTGATCATGATGGCTTAGGGAGCCTGATGAAGATCGACTCTTGATAATTGTT
ACTGCTATATTAGTTGGACCGTATTTATTTGCCTGCGGCATAATTAGTTTGAGGGCAATT
TGTTTC