Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053091_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:4:213273347:213275271:-1 gene:Zm00001d053091 gene_biotype:protein_coding transcript_biotype:protein_coding description:Adagio protein 3
Sequence

ATGGTCGTTTCAGAGATCCGGCGATGCCTCAACGAGGGGATTGAATTCCATGGCGAGCTG
CTAAATTTCCGGAAGGATGGCGCTCCACTTTACAACAGATTAAGTCTCATTCCAATGCAC
GGGGATGATGGCTACGTGACACATGTGATTGGAATCCAACTATTCTCCGAGGCAAACATC
GATCTCAGCAGCGTGTCGTATCCGGTGTACAAGCAACAGACCAACAACAGGCCCAGCATT
CAAGATCTGAACTCAGCTTCCCATGAGCATGCTCCGAAAGTCCAGAGTGCAGACCACTGC
GGTATACTTCAGTTGTCAGACGAAGTTCTCGCACACAACATTCTGTCTCGCCTGTCACCT
AGAGATGTCGCATCCATTGGATCCGTCTGTACCAGGATGCATGAGCTTACCAAGAATGAT
CACCTGAGGAAGATGGTCTGCCAGAACGCGTGGGGAAGGGATGCCACTGTCAAGCTTGAG
ATGAGCACCAAGATGGTAGGATGGGGCCGTCTTGCGAGAGAGCTAACTACTCTTGAGGCC
GCCTCGTGGAGGAAGTTCACGGTTGGAGGGCGCGTCGAGCCTTCCCGATGCAACTTCAGT
GCCTGTGCTGTTGGTAACCGCTTGGTCCTTTTCGGAGGGGAGGGTGTCAACATGCAGCCT
ATGGACGACACCTTTGTGCTTAACATGGAGGCTGCAAGGCCGGAATGGCGCCGCGTGAAG
GTTTCCGCCTCCCCACCAGGCCGGTGGGGGCACACTCTGTCGTGGCTGAACGGGTCATGG
CTGGTGGTATTTGGGGGCTGCGGACAGCAAGGTTTGCTCAATGATGTCTTCGTCCTTGAC
CTTGACGCTCAGCAGCCAACGTGGAGGGAGGTTGCAAGCGAGGGTCCTCCACTGCCACGG
TCCTGGCACAGCTCATGCACCTTGGATGGTTCGAAGCTGGTCGTCTCCGGTGGCTGCACC
GAGTCTGGCGTTCTCCTCAGCGACACCTTCCTGCTTGACCTCACCAAGGAGAAGCCTGCG
TGGAGGGAAATTCCCACATCTTGGTCACCCCCATCCCGCCTCGGCCACACCATGTCCGTC
TACGGTACGACTAAACTGCTCATGTTCGGTGGGCTGGCGAAGAGCGGCTCGCTCCGGCTG
CGCTCCAGCGACGCCTACACGATGGACGTCGGCGAAGATAGTCCGCAGTGGAGGCAGCTG
GCGACGACCGGATTCCCAAACGTCGGCCCACCGCCGAGGCTCGATCACGTTGCGGTGAGC
CTGCCCTGTGGACGGATCATCATATTCGGTGGCTCCATCGCGGGACTCCACTCCCCGGCG
CAGCTGTTCCTGGTCGATCCAGCAGAGGAGAAGCCGACGTGGAGGATCCTGAACGTTCCC
GGCAAACCCCCCAAGTTCGCCTGGGGGCACAGCACCTGCGTGGTTGGCGGCACTAGGGTC
CTCGTCCTCGGAGGCCACACCGGGGAGGAGTGGATACTGAACGAGCTACATGAGCTCTGC
CTGGCAAGCAGGCCCGACGACGACGACGATGACCGCTACTGA

Peptide Sequence

PEP ID

Zm00001d053091_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:4:213273347:213275271:-1 gene:Zm00001d053091 transcript:Zm00001d053091_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Adagio protein 3
Sequence

MVVSEIRRCLNEGIEFHGELLNFRKDGAPLYNRLSLIPMHGDDGYVTHVIGIQLFSEANI
DLSSVSYPVYKQQTNNRPSIQDLNSASHEHAPKVQSADHCGILQLSDEVLAHNILSRLSP
RDVASIGSVCTRMHELTKNDHLRKMVCQNAWGRDATVKLEMSTKMVGWGRLARELTTLEA
ASWRKFTVGGRVEPSRCNFSACAVGNRLVLFGGEGVNMQPMDDTFVLNMEAARPEWRRVK
VSASPPGRWGHTLSWLNGSWLVVFGGCGQQGLLNDVFVLDLDAQQPTWREVASEGPPLPR
SWHSSCTLDGSKLVVSGGCTESGVLLSDTFLLDLTKEKPAWREIPTSWSPPSRLGHTMSV
YGTTKLLMFGGLAKSGSLRLRSSDAYTMDVGEDSPQWRQLATTGFPNVGPPPRLDHVAVS
LPCGRIIIFGGSIAGLHSPAQLFLVDPAEEKPTWRILNVPGKPPKFAWGHSTCVVGGTRV
LVLGGHTGEEWILNELHELCLASRPDDDDDDRY

Transcript Sequence

Transcript ID

Zm00001d053091_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:213273347:213275271:-1 gene:Zm00001d053091 gene_biotype:protein_coding transcript_biotype:protein_coding description:Adagio protein 3
Sequence

CAGCCGATTCCTGCAATTTCGGGATCCACGAGCCCAGAGGCGACATCCCCTTGTTGATCC
CATGGTCGTTTCAGAGATCCGGCGATGCCTCAACGAGGGGATTGAATTCCATGGCGAGCT
GCTAAATTTCCGGAAGGATGGCGCTCCACTTTACAACAGATTAAGTCTCATTCCAATGCA
CGGGGATGATGGCTACGTGACACATGTGATTGGAATCCAACTATTCTCCGAGGCAAACAT
CGATCTCAGCAGCGTGTCGTATCCGGTGTACAAGCAACAGACCAACAACAGGCCCAGCAT
TCAAGATCTGAACTCAGCTTCCCATGAGCATGCTCCGAAAGTCCAGAGTGCAGACCACTG
CGGTATACTTCAGTTGTCAGACGAAGTTCTCGCACACAACATTCTGTCTCGCCTGTCACC
TAGAGATGTCGCATCCATTGGATCCGTCTGTACCAGGATGCATGAGCTTACCAAGAATGA
TCACCTGAGGAAGATGGTCTGCCAGAACGCGTGGGGAAGGGATGCCACTGTCAAGCTTGA
GATGAGCACCAAGATGGTAGGATGGGGCCGTCTTGCGAGAGAGCTAACTACTCTTGAGGC
CGCCTCGTGGAGGAAGTTCACGGTTGGAGGGCGCGTCGAGCCTTCCCGATGCAACTTCAG
TGCCTGTGCTGTTGGTAACCGCTTGGTCCTTTTCGGAGGGGAGGGTGTCAACATGCAGCC
TATGGACGACACCTTTGTGCTTAACATGGAGGCTGCAAGGCCGGAATGGCGCCGCGTGAA
GGTTTCCGCCTCCCCACCAGGCCGGTGGGGGCACACTCTGTCGTGGCTGAACGGGTCATG
GCTGGTGGTATTTGGGGGCTGCGGACAGCAAGGTTTGCTCAATGATGTCTTCGTCCTTGA
CCTTGACGCTCAGCAGCCAACGTGGAGGGAGGTTGCAAGCGAGGGTCCTCCACTGCCACG
GTCCTGGCACAGCTCATGCACCTTGGATGGTTCGAAGCTGGTCGTCTCCGGTGGCTGCAC
CGAGTCTGGCGTTCTCCTCAGCGACACCTTCCTGCTTGACCTCACCAAGGAGAAGCCTGC
GTGGAGGGAAATTCCCACATCTTGGTCACCCCCATCCCGCCTCGGCCACACCATGTCCGT
CTACGGTACGACTAAACTGCTCATGTTCGGTGGGCTGGCGAAGAGCGGCTCGCTCCGGCT
GCGCTCCAGCGACGCCTACACGATGGACGTCGGCGAAGATAGTCCGCAGTGGAGGCAGCT
GGCGACGACCGGATTCCCAAACGTCGGCCCACCGCCGAGGCTCGATCACGTTGCGGTGAG
CCTGCCCTGTGGACGGATCATCATATTCGGTGGCTCCATCGCGGGACTCCACTCCCCGGC
GCAGCTGTTCCTGGTCGATCCAGCAGAGGAGAAGCCGACGTGGAGGATCCTGAACGTTCC
CGGCAAACCCCCCAAGTTCGCCTGGGGGCACAGCACCTGCGTGGTTGGCGGCACTAGGGT
CCTCGTCCTCGGAGGCCACACCGGGGAGGAGTGGATACTGAACGAGCTACATGAGCTCTG
CCTGGCAAGCAGGCCCGACGACGACGACGATGACCGCTACTGACTAGTTTCGTTGCACAT
GGTTCATCTGTTTTATATGCTATATGCTATTGTTCGTAACTACTTCCAGTATGTTGTTGG
GTAATCGGTATGAGAAAAAATAGTGGAAAATTAATTAAAAAAGTTAGACTAGAAGATTTT
AGTGTATTTTGTTTTCATCGGAGAAGTTTCCTTTTATCGGTCTAGATAGATTCTATGGTC
TATATATTTGTATATTTTTTGTCTAAAAGATCAAAAAAAACTGAAACAAGTTCCAATGTC
TTGTACTCTTATTTTTAATCATATGTAAAATAT