Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053038_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:4:210204454:210229891:1 gene:Zm00001d053038 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

ATGACGGTGGCATATTTGAAGGAGAAGCCAGCAGGCCAGGGTTCCACGCCTTCAACACCA
AGTGCTGGTAGTGGGATGCGGTCTGCAGCTGCGAGACTGCTTGGCACTGGGAATGGTAGC
CGGACACTTAGCTTCGGGAGCAATGGTACCAGCAGGGCTGTCTCAGGAAGCAGCCGCATG
GGTGGAGGTATTGGTGTGTCAACTAGTGCAAGTGGATCGCAAGGCATGGCGAACTACGAT
GGAAAGGGCTCATACATCATATTCAATACTGCGGATACGCTCTTCATCAGTGATCTCAAC
TCACATGACAAAGATCCAATAAAGTCCATCCACTTCAGCAGCTCAAACCCGCTTTGCCAT
GCATTTGACCCAGAGGCCAAGGATGGACATGATCTGCTCATTGGGGTGTTCTCAGGAGAT
GTCTATTCAATGTCACTGAGGCATCAGTTGCAAGATCCTGGAAAGAAGCCTGTTTCATAC
CAGCATTTTGTTAATAAAGACAAAGACAAAGATAAAGATCCAAGTCAAGGTGGCGCTGCC
AGCAGTCAGTGCACCTGTGTTGCATGGGTTCCGGAGCGTGAAGGAATTTTTGTTGTTAGT
CATGCTGATGGGAATCTGTATGTGTATGACAAATTCAAGGATGGAAATACTGATTGGACA
TTTCCAACTGTTAAGGATCAAAGCCAGGTGCTAATTTCACATGCAAAGTCGAGTAAGGGC
AATCCAATTGCAAGGTGGCACATCTGTCAAGGTGCAATCAATGGCATTTCCTTTTCACCG
GATGGTGCTTACTTGGCAACTGTTGGGCGAGATGGTTATTTAAGAGTATTTGACTTCACG
AAAGAACAACTAATATTTGGTGGGAAAAGTTACTATGGTGCACTGTTGTGTTGCTCTTGG
AGTGCGGATGGCAAATATTTGTTATCGGGTGGTGAAGATGATCTTGTGCAAGTATGGAGC
ATGGATGACAGAAAGATAGTTGCATGGGGTGAAGGGCATAATTCATGGGTTAGTGCAGTT
TCTTTTGATCCGTGTTGGTCCCAACCAAATTCAGATGAAACTGAAGAAAATGTCATGTAT
CGCTTTGGGTCAGTTGGACAGGATACCCAACTGCTTCTCTGGGATCTGGCATTGGACGAG
ATTGCTGTCCCTCTACGCCATCCTTCCGGTGGGTCACCGACATTCAGTAGTGGAAGCCCT
TCTGCACACTGGGATAATGCATGCCCTCCAACCGGTGTTCTCCAACCCTCTCCACGGATG
CGAGATGTGCCGAAGCTCTCACCTCTCGTTGCACACCGGGTACATGTAGATCCCCTATCT
GGCTTGGAATTCACCAGTGAATCAATTGTCACTATATGCCGTGAGGGGCTAATCAAAATT
TGGGCACGACCCATCCATAGTGAAAACAACCAGCAGCCAGATTCTTCTGAACAGGTTATA
GGCAGTGCCACTGCTAAGGATAAGATGTTAACATCGTCAAATAAAGCAGGTGCTTTCAGC
TCCAGCTTCAAGCAACCGCCATCTGTTCTTTTCACATGA

Peptide Sequence

PEP ID

Zm00001d053038_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:4:210204454:210229891:1 gene:Zm00001d053038 transcript:Zm00001d053038_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

MTVAYLKEKPAGQGSTPSTPSAGSGMRSAAARLLGTGNGSRTLSFGSNGTSRAVSGSSRM
GGGIGVSTSASGSQGMANYDGKGSYIIFNTADTLFISDLNSHDKDPIKSIHFSSSNPLCH
AFDPEAKDGHDLLIGVFSGDVYSMSLRHQLQDPGKKPVSYQHFVNKDKDKDKDPSQGGAA
SSQCTCVAWVPEREGIFVVSHADGNLYVYDKFKDGNTDWTFPTVKDQSQVLISHAKSSKG
NPIARWHICQGAINGISFSPDGAYLATVGRDGYLRVFDFTKEQLIFGGKSYYGALLCCSW
SADGKYLLSGGEDDLVQVWSMDDRKIVAWGEGHNSWVSAVSFDPCWSQPNSDETEENVMY
RFGSVGQDTQLLLWDLALDEIAVPLRHPSGGSPTFSSGSPSAHWDNACPPTGVLQPSPRM
RDVPKLSPLVAHRVHVDPLSGLEFTSESIVTICREGLIKIWARPIHSENNQQPDSSEQVI
GSATAKDKMLTSSNKAGAFSSSFKQPPSVLFT

Transcript Sequence

Transcript ID

Zm00001d053038_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:210204454:210229891:1 gene:Zm00001d053038 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

GTCTGTGGCGGGATCGGGCGGCGGGGCAAGCGCGGGGGCCGGTGGGTTGAAGACTTACTT
CAAGACCCCCGAGGGGCGGCACAAGCTGCAGTACGAGAAGACGCACTCCCCCGCCGTCGT
GCACTACAACCACAACGGCAAGACCGTCGCCCAGATGACGGTGGCATATTTGAAGGAGAA
GCCAGCAGGCCAGGGTTCCACGCCTTCAACACCAAGTGCTGGTAGTGGGATGCGGTCTGC
AGCTGCGAGACTGCTTGGCACTGGGAATGGTAGCCGGACACTTAGCTTCGGGAGCAATGG
TACCAGCAGGGCTGTCTCAGGAAGCAGCCGCATGGGTGGAGGTATTGGTGTGTCAACTAG
TGCAAGTGGATCGCAAGGCATGGCGAACTACGATGGAAAGGGCTCATACATCATATTCAA
TACTGCGGATACGCTCTTCATCAGTGATCTCAACTCACATGACAAAGATCCAATAAAGTC
CATCCACTTCAGCAGCTCAAACCCGCTTTGCCATGCATTTGACCCAGAGGCCAAGGATGG
ACATGATCTGCTCATTGGGGTGTTCTCAGGAGATGTCTATTCAATGTCACTGAGGCATCA
GTTGCAAGATCCTGGAAAGAAGCCTGTTTCATACCAGCATTTTGTTAATAAAGACAAAGA
CAAAGATAAAGATCCAAGTCAAGGTGGCGCTGCCAGCAGTCAGTGCACCTGTGTTGCATG
GGTTCCGGAGCGTGAAGGAATTTTTGTTGTTAGTCATGCTGATGGGAATCTGTATGTGTA
TGACAAATTCAAGGATGGAAATACTGATTGGACATTTCCAACTGTTAAGGATCAAAGCCA
GGTGCTAATTTCACATGCAAAGTCGAGTAAGGGCAATCCAATTGCAAGGTGGCACATCTG
TCAAGGTGCAATCAATGGCATTTCCTTTTCACCGGATGGTGCTTACTTGGCAACTGTTGG
GCGAGATGGTTATTTAAGAGTATTTGACTTCACGAAAGAACAACTAATATTTGGTGGGAA
AAGTTACTATGGTGCACTGTTGTGTTGCTCTTGGAGTGCGGATGGCAAATATTTGTTATC
GGGTGGTGAAGATGATCTTGTGCAAGTATGGAGCATGGATGACAGAAAGATAGTTGCATG
GGGTGAAGGGCATAATTCATGGGTTAGTGCAGTTTCTTTTGATCCGTGTTGGTCCCAACC
AAATTCAGATGAAACTGAAGAAAATGTCATGTATCGCTTTGGGTCAGTTGGACAGGATAC
CCAACTGCTTCTCTGGGATCTGGCATTGGACGAGATTGCTGTCCCTCTACGCCATCCTTC
CGGTGGGTCACCGACATTCAGTAGTGGAAGCCCTTCTGCACACTGGGATAATGCATGCCC
TCCAACCGGTGTTCTCCAACCCTCTCCACGGATGCGAGATGTGCCGAAGCTCTCACCTCT
CGTTGCACACCGGGTACATGTAGATCCCCTATCTGGCTTGGAATTCACCAGTGAATCAAT
TGTCACTATATGCCGTGAGGGGCTAATCAAAATTTGGGCACGACCCATCCATAGTGAAAA
CAACCAGCAGCCAGATTCTTCTGAACAGGTTATAGGCAGTGCCACTGCTAAGGATAAGAT
GTTAACATCGTCAAATAAAGCAGGTGCTTTCAGCTCCAGCTTCAAGCAACCGCCATCTGT
TCTTTTCACATGATTGAAGAGGCTTTGCTAGCATTTTTATCATGCTCGCTTGGCCATGGC
CATTCATCTATCTTTTGTTACTAACTTGAGGTTAAACGGAGCAGAGTAGCTTGGGAAGGC
TTGCAGTAAAGGATTGAAGAGGCTTTGCTAGCATTTTTGTTAGCCATTTCTTATCCTGCT
TCATCGGCAACGTTTCTAGTTACAGAAGTGTCATTGTTGCCATCAATGTTGGCGAAAGAA
AATAACAGAACTTGCTCCTGTACATATACAGACATTGCCATAAGATGAAATATTACAAGC
TTACTGGTTTGATATTATTTGTTTCTT