Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053018_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:4:209379128:209386562:1 gene:Zm00001d053018 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative RING zinc finger domain superfamily protein

Sequence

ATGGACGCCGGCGAGTGCTCCACCTCCAAACCCCCTCAGCCCTCTGCCGCCTCCCCGTCC
TCCCCCACCGTATGGGCTAGGCTGGTGCCCGCCGATTCCGCGTGCCCGACGGTGGAGGTG
GCCGAAGACGACTCCGTGGTCTGCTCCCTCGTTGCGCCGCCCTGCGGCGGGGAGGAGGTC
GCGTGGTGCGAGATCAGGCGGAATGCCGGGGACGCGTCGTCCGCCACTATTCGGAACCTT
AGCTCGGATGCAATTATTGTTGATGGAAGAATTGTCGAACAAGAATGCGTAGACATCAAA
CCAGGCAGTGAGATTGTCTCTGGACCCCAGAAAGAAGGGCATTTAATATATACATTTGAA
ATTACAGAGGCAGAGGATCATGAAAAAAAAAATGTCAAGATTGTTCTAGATATCGAGAAT
GCAAAATGCAGCATATGCCTGAATTTGTGGCATGATGTTGTTACTGTTGCTCCATGCCTG
CACAACTTCTGCAATGGATGTTTCTCAGAGTGGTTAAGGAGGTCTTCATCTAATTCACGT
GATAAAAGCCAGAGCGCTGCATGCCCACAATGTAGGACAACAGTTCAATCAGTTGGAAGG
AATCACTTCCTGCATAATATTGAAGAGGCTATATTGCAAGCTTTTTCCTCACTACAGAGA
TCTGATGAGGAGATTGCGTTGTTAGAGTCGTATGCTTCAGTTAAGTCGAATATGGTTTTG
GGTCAACAGAAAAACCAATCAAGGAAAAGACGTTTTTCACGTTCTAGTGATGATACCGAC
AATTCAGATCTACCATGTCCTCAATGCCGTAATGAATTTGGTGGATTTAGATGCAGCCCA
GGATCTGTGCACTTGCAATGCAGTGGATGTGGAGGAATGATGCCAGCCAGATCTAACATC
AGTATACCACAAAAATGCTTGGGGTGTGATAAAGCGTTTTGTGGGGCTTATTGGTATTCG
CAAGGTGTGAGTTCAAGTCATTGCAATCTGATCTGCAACCAGGATACTTTGAAGAGTATT
TATCAGCGACATATCTCTGCACTTCCTGACACAATTCATGGGGGCAATCCATATGAAAAA
GATATTACAGAAAGATGTATACAGCAATCAGGCAAAACATTGCAAGTTGTAATCTCAGAG
TGGATATCAAAATTTGACAACATGGAAATTGATCGTTCAAGGTTGCAATTGAATAATGTG
GATGCAATTACTTCCAGGACATATATCTGCAACCATTGCTACAGCAAGTTTGTTGATTTC
CTGCTCTACTGGTTCCGTGTATCATTGCCCCAAAATCTTCTTCCACGTGATGCTGCGGAG
AGGGAGAGCTGCTGGTACGGTTTCATGTGCCGCACCCAGCACCATCGGCCTGACCACGCC
AAGAAGCTGAACCACGTGTGTCGCCCGACAAGAGGCAACCAGCCCTAG

Peptide Sequence

PEP ID

Zm00001d053018_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:4:209379128:209386562:1 gene:Zm00001d053018 transcript:Zm00001d053018_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative RING zinc finger domain superfamily protein

Sequence

MDAGECSTSKPPQPSAASPSSPTVWARLVPADSACPTVEVAEDDSVVCSLVAPPCGGEEV
AWCEIRRNAGDASSATIRNLSSDAIIVDGRIVEQECVDIKPGSEIVSGPQKEGHLIYTFE
ITEAEDHEKKNVKIVLDIENAKCSICLNLWHDVVTVAPCLHNFCNGCFSEWLRRSSSNSR
DKSQSAACPQCRTTVQSVGRNHFLHNIEEAILQAFSSLQRSDEEIALLESYASVKSNMVL
GQQKNQSRKRRFSRSSDDTDNSDLPCPQCRNEFGGFRCSPGSVHLQCSGCGGMMPARSNI
SIPQKCLGCDKAFCGAYWYSQGVSSSHCNLICNQDTLKSIYQRHISALPDTIHGGNPYEK
DITERCIQQSGKTLQVVISEWISKFDNMEIDRSRLQLNNVDAITSRTYICNHCYSKFVDF
LLYWFRVSLPQNLLPRDAAERESCWYGFMCRTQHHRPDHAKKLNHVCRPTRGNQP

Transcript Sequence

Transcript ID

Zm00001d053018_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:209379128:209386562:1 gene:Zm00001d053018 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative RING zinc finger domain superfamily protein

Sequence

GCCTCCCTGCACCATGGACGCCGGCGAGTGCTCCACCTCCAAACCCCCTCAGCCCTCTGC
CGCCTCCCCGTCCTCCCCCACCGTATGGGCTAGGCTGGTGCCCGCCGATTCCGCGTGCCC
GACGGTGGAGGTGGCCGAAGACGACTCCGTGGTCTGCTCCCTCGTTGCGCCGCCCTGCGG
CGGGGAGGAGGTCGCGTGGTGCGAGATCAGGCGGAATGCCGGGGACGCGTCGTCCGCCAC
TATTCGGAACCTTAGCTCGGATGCAATTATTGTTGATGGAAGAATTGTCGAACAAGAATG
CGTAGACATCAAACCAGGCAGTGAGATTGTCTCTGGACCCCAGAAAGAAGGGCATTTAAT
ATATACATTTGAAATTACAGAGGCAGAGGATCATGAAAAAAAAAATGTCAAGATTGTTCT
AGATATCGAGAATGCAAAATGCAGCATATGCCTGAATTTGTGGCATGATGTTGTTACTGT
TGCTCCATGCCTGCACAACTTCTGCAATGGATGTTTCTCAGAGTGGTTAAGGAGGTCTTC
ATCTAATTCACGTGATAAAAGCCAGAGCGCTGCATGCCCACAATGTAGGACAACAGTTCA
ATCAGTTGGAAGGAATCACTTCCTGCATAATATTGAAGAGGCTATATTGCAAGCTTTTTC
CTCACTACAGAGATCTGATGAGGAGATTGCGTTGTTAGAGTCGTATGCTTCAGTTAAGTC
GAATATGGTTTTGGGTCAACAGAAAAACCAATCAAGGAAAAGACGTTTTTCACGTTCTAG
TGATGATACCGACAATTCAGATCTACCATGTCCTCAATGCCGTAATGAATTTGGTGGATT
TAGATGCAGCCCAGGATCTGTGCACTTGCAATGCAGTGGATGTGGAGGAATGATGCCAGC
CAGATCTAACATCAGTATACCACAAAAATGCTTGGGGTGTGATAAAGCGTTTTGTGGGGC
TTATTGGTATTCGCAAGGTGTGAGTTCAAGTCATTGCAATCTGATCTGCAACCAGGATAC
TTTGAAGAGTATTTATCAGCGACATATCTCTGCACTTCCTGACACAATTCATGGGGGCAA
TCCATATGAAAAAGATATTACAGAAAGATGTATACAGCAATCAGGCAAAACATTGCAAGT
TGTAATCTCAGAGTGGATATCAAAATTTGACAACATGGAAATTGATCGTTCAAGGTTGCA
ATTGAATAATGTGGATGCAATTACTTCCAGGACATATATCTGCAACCATTGCTACAGCAA
GTTTGTTGATTTCCTGCTCTACTGGTTCCGTGTATCATTGCCCCAAAATCTTCTTCCACG
TGATGCTGCGGAGAGGGAGAGCTGCTGGTACGGTTTCATGTGCCGCACCCAGCACCATCG
GCCTGACCACGCCAAGAAGCTGAACCACGTGTGTCGCCCGACAAGAGGCAACCAGCCCTA
GTGAGACTTGACTGTTTCTGTCACCATTGTCATCACCATCCATTGTATGTGTGTGTCATC
AAAATGGTCAGGAAGTGTGGCGCGTCCATGTTTGGAACCCTTTTTGGTTTGATCCTGGCT
GGACCTGACAAGG