Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d053009_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:4:208862488:208866798:1 gene:Zm00001d053009 gene_biotype:protein_coding transcript_biotype:protein_coding description:Long chain acyl-CoA synthetase 9 chloroplastic
Sequence

ATGTATACGAGTGGAAGCACAGGAATGCCTAAGGGAGTCATGATGAGCCACCAAAATGTC
TTGGCTGTAGTTTCAGCTGTTATGACGATTGTGCCTGGTCTTGGCAAGAAGGATGTGTAC
CTGGCATATCTTCCCCTAGCACATATCCTTGAATTGGCAGCTGAGGCAATCATAACTGGT
GTTGGGGCTTCAATAGGTTACGGGTCACCTTTGACCCTGACTGATACATCAAATAAAATA
AAAAAGGGGACGCAAGGTGATGCTTCTGTACTGAAGCCAACGCTAATGACTGCTGTACCT
GCTATACTTGATCGTGTTCGTGATGGTGTACGAAAAAATGTAGATGCAAAAGGTGGGTTA
GCGAAGAGATTATTTGATATTGCCTATAGCCGTCGTCTAGCTGCTGTCAATGGAAGCTGG
TTGGGTGCGTGGGGACTAGAGAAGCTTTTGTGGGATATGCTCGTCTTCCGAAAGGTTCGT
GCAATCTTGGGAGGACGGATTCGCTTTATTCTTGCAGGTGGAGCACCTCTGTCAGGGGAA
ACACAGAGATTTATCAATATATGTCTTGGGGCTCCAATATCTCAAGGATATGGCTTGACT
GAAACCTGTGCTGGTGGGACATTTTCAGAGTATGATGAAACATCTGTTGGTCGCGTTGGT
CCCCCTTTGCCTTGTTCATACATTAAGTTGATAGACTGGGCCGAAGGTGGATACTTAACA
ACCGATTCACCAATGCCTCGGGGTGAAATAGTTATTGGAGGTCCAAATGTAACTAAAGGC
TACTTCAAAAATGAAGCAAAAACAAATGAGGTGTACAAGGTTGATGAAAGAGGCATGCGA
TGGTTCTACTCTGGCGACATTGGGCGCTTGCACCCAGATGGATGTCTTGAAATTATCGAC
CGCAAGAAGGATATAGTCAAGCTTCAACACGGTGAATATGTTTCTCTAGGAAAGGTGGAG
GCTACTTTGAGTGTGTGCTCATACGTTGACCAGATCATGATCCATGCTGACCCCTTCCAC
AGCTACTGTGTGGCACTTGTTGTAACTGCACAGAGTGAGCTGAAATCCTGGGCCTCAAAA
CAAGGAATGACATATAGTGATTTCTCAGATTTGTGCCACAAGCAAGGGACAGTCAAAGAA
GTCCTCCAATCTTTGGTGAAGGCTGGTAAGCAAGCACGGTTGGAGAAGTTTGAGATCCCT
GCCAAAATCAAGCTGATACCGGAGCCGTGGACGCCGGAGTCAGGCCTCGTCACGGCTGCC
CTCAAGCTCAAGAGGGAGGTGATCAAGAAGGCATACGAGATGGACCTTGCCCAGTTGTAC
AGTCAGTGA

Peptide Sequence

PEP ID

Zm00001d053009_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:4:208862488:208866798:1 gene:Zm00001d053009 transcript:Zm00001d053009_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:Long chain acyl-CoA synthetase 9 chloroplastic
Sequence

MYTSGSTGMPKGVMMSHQNVLAVVSAVMTIVPGLGKKDVYLAYLPLAHILELAAEAIITG
VGASIGYGSPLTLTDTSNKIKKGTQGDASVLKPTLMTAVPAILDRVRDGVRKNVDAKGGL
AKRLFDIAYSRRLAAVNGSWLGAWGLEKLLWDMLVFRKVRAILGGRIRFILAGGAPLSGE
TQRFINICLGAPISQGYGLTETCAGGTFSEYDETSVGRVGPPLPCSYIKLIDWAEGGYLT
TDSPMPRGEIVIGGPNVTKGYFKNEAKTNEVYKVDERGMRWFYSGDIGRLHPDGCLEIID
RKKDIVKLQHGEYVSLGKVEATLSVCSYVDQIMIHADPFHSYCVALVVTAQSELKSWASK
QGMTYSDFSDLCHKQGTVKEVLQSLVKAGKQARLEKFEIPAKIKLIPEPWTPESGLVTAA
LKLKREVIKKAYEMDLAQLYSQ

Transcript Sequence

Transcript ID

Zm00001d053009_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:208862488:208866798:1 gene:Zm00001d053009 gene_biotype:protein_coding transcript_biotype:protein_coding description:Long chain acyl-CoA synthetase 9 chloroplastic
Sequence

TTGCAGGTTTCTAACACCAAGGCACCTGCCAATAAATTTTGCCTACTGGCACTCCATATA
TTAGAAGCAATATGAATCCGTATTTCTTGGGATTCATTCTCCCTTTTGTGGCATCTCTGC
TGCTTACCAAGAGAAAGTCCGAGAAGAAGAGGGGGGTGCCAGTCAATGTGGGTGGAGAGC
CTGGCTGCGCCATCCGTAACCACAGATTTGAAAGACCTGTCAAGACGCGCTGGGAGGGGA
TTTCCACGCTTGCTGAGCTATTTGAGCAATCGTGCAAGCAGTTTGCCTCTACACCCCTGT
TTGGCACCAGGAAGCTCATTGCAAGAGAAATGGTAGTGGCTGCTGATGGAAGATCCTTTG
AGAAGCTCCATTTGGGAAACTATGAGTGGAGAAGCTATGCTGATGCATTCAAAACTGTCT
GCAATTTCGCTTCTGGTCTACTGCGGATTGGACACCTCAAGGATGAGCGTGTTGCTATTT
TTGCTGACACACGGGCTGAGTGGCAGATTGCGTTGCAGGCATGCTTCAGACAAAATATTG
CAGTTGTCACAATCTATGCCTCTTTGGGGGAGGGAGCGCTATGTCACTCACTAAATGAGG
TGCATTGTTGTACTTTCAGCTGATCTTATTCTTGACTCTGCTCTTTAGACCGAGGTAACT
ACTGTTGTATGTGGACGAAAAGAATTTAAAAAGCTGATTGATATAAGTGGGCAACTTGAC
ACTGTGAAACATGTCATCTACATTGATGAGGAAGGCATCTCAGTTGAAGTGTCCTTGGCT
GAAAACTGTACTAGCTGGACAGTCAAGTCATTTGAAGAGGTAGAGAGTATAGGCTTGCAA
AGACCTGTTGAAGCAAACTTGCCTCTCCCATCAGATACTGCAGTGATTATGTATACGAGT
GGAAGCACAGGAATGCCTAAGGGAGTCATGATGAGCCACCAAAATGTCTTGGCTGTAGTT
TCAGCTGTTATGACGATTGTGCCTGGTCTTGGCAAGAAGGATGTGTACCTGGCATATCTT
CCCCTAGCACATATCCTTGAATTGGCAGCTGAGGCAATCATAACTGGTGTTGGGGCTTCA
ATAGGTTACGGGTCACCTTTGACCCTGACTGATACATCAAATAAAATAAAAAAGGGGACG
CAAGGTGATGCTTCTGTACTGAAGCCAACGCTAATGACTGCTGTACCTGCTATACTTGAT
CGTGTTCGTGATGGTGTACGAAAAAATGTAGATGCAAAAGGTGGGTTAGCGAAGAGATTA
TTTGATATTGCCTATAGCCGTCGTCTAGCTGCTGTCAATGGAAGCTGGTTGGGTGCGTGG
GGACTAGAGAAGCTTTTGTGGGATATGCTCGTCTTCCGAAAGGTTCGTGCAATCTTGGGA
GGACGGATTCGCTTTATTCTTGCAGGTGGAGCACCTCTGTCAGGGGAAACACAGAGATTT
ATCAATATATGTCTTGGGGCTCCAATATCTCAAGGATATGGCTTGACTGAAACCTGTGCT
GGTGGGACATTTTCAGAGTATGATGAAACATCTGTTGGTCGCGTTGGTCCCCCTTTGCCT
TGTTCATACATTAAGTTGATAGACTGGGCCGAAGGTGGATACTTAACAACCGATTCACCA
ATGCCTCGGGGTGAAATAGTTATTGGAGGTCCAAATGTAACTAAAGGCTACTTCAAAAAT
GAAGCAAAAACAAATGAGGTGTACAAGGTTGATGAAAGAGGCATGCGATGGTTCTACTCT
GGCGACATTGGGCGCTTGCACCCAGATGGATGTCTTGAAATTATCGACCGCAAGAAGGAT
ATAGTCAAGCTTCAACACGGTGAATATGTTTCTCTAGGAAAGGTGGAGGCTACTTTGAGT
GTGTGCTCATACGTTGACCAGATCATGATCCATGCTGACCCCTTCCACAGCTACTGTGTG
GCACTTGTTGTAACTGCACAGAGTGAGCTGAAATCCTGGGCCTCAAAACAAGGAATGACA
TATAGTGATTTCTCAGATTTGTGCCACAAGCAAGGGACAGTCAAAGAAGTCCTCCAATCT
TTGGTGAAGGCTGGTAAGCAAGCACGGTTGGAGAAGTTTGAGATCCCTGCCAAAATCAAG
CTGATACCGGAGCCGTGGACGCCGGAGTCAGGCCTCGTCACGGCTGCCCTCAAGCTCAAG
AGGGAGGTGATCAAGAAGGCATACGAGATGGACCTTGCCCAGTTGTACAGTCAGTGACCT
GCCGCTACAGTTTCTCAACGATAGGGGTGATCCTGGTAGCTACCGGCAACAACAGTTTTT
TTTATTTGTACCTCGTACTATGTTCCTGTCTTTCTTTTAAGACAATAGTTGACTGGTAAA
TCAGTTGC