Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052977_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:206919670:206923445:-1 gene:Zm00001d052977 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGCGGCCTCCAACGCTGCATCCGTCTCCTCGGCCGCGCCCCGCCTGCTCCTGCTCCGC
CGCCGCGGAGGAGCCAGCGGCAGCGCGCAGCACCGCAATGCGCGCTTCCGCGCCGCCGCC
GGCGGCGGGTCGTACCTGGACATGTGGAAGAAGGCGGTGGAACGGGAGCGGCGGTCGGCG
GATCTCGCGCGCAGGCTCCAGGCGCCCCCCGCCGAGGCAGACGCGCCCGCGCCCGCACCG
CCCGTGGAGGACGTGCGGCGCCGGACGGCGCGGTTCGAGGAGATGCTGCGGGTTCCGCGG
GAGGAGCGCGACCGCGTGCAGCGCAACCAGGTCATCGACCGCGCCGCGGCCGCCCTCGCC
GCCGCCCGCGCCGTGCTCAAGGAGCCGCCTGCCTTCTCGCCGCCCCCGACGCCGCCGCAG
GTGGCGGAGACGGGCAAGGTGGGATCGGCCGGGGGCGGTGCTGCTAGGGGATCAGATCGG
AATTCCCGGTCGGCGGCACGGGCACAGCTGTCGCCCTCGGCGGAAGTGCAAGACTCCGGT
GGCTCATCTCCTCACAACCAGTCAAGTTCCAAGCTTGGTACTCCAGGTCCAGATTTCTGG
TCATGGTTACCTCCAGTACAAGATAGCAGTAAACAAAAGGAAAGCAATACTGGTTTGAAG
CCATCCAAAAAATTAGATACCTTTTCCAGTCAGCCTGATCTGTTGATGGAAAAGGAACGC
TTGGCGGATTCTTTACCACTCCCTTTCGAGACAGCTTTCTTCAAGAAGGAAGATCGATCT
CTTCCTCCCTTCCAATCATTTGCTGAGCCTGAGAATGTGGATTCCTCGGCCGATCTGGCC
GCTGACAAAGAGGACACGTTCGAAGAACAGTTCTCGAAAAATGCAGCCGAGGTGGCTCGC
GCGCTCAGTGAGAGCGTCGGGAAACCATCACACGGAATACATCTAGATGGCTCAATGTGG
TGGAAGGAAGTAGGTGTAGAACGAAGACCTGATGGTGTTGTTTGCAAGTGGACCGTGATC
AGGGGAGTTAGTGCTGATGGCGCTGTTGAATGGGAAGACAAATACTGGGAGGCCTCAGAC
CGGTTCGATCATAAAGAGTTAGGCTCGGAGAAGTCTGGGCGTGATGCTGCGGGCAACGTT
TGGCGGGAATACTGGAAGGAGTCAATGTGGCAGGATTACACATGTGGGGTTATGCATATG
GAGAAGAATGCAGACAAGTGGGGACAGAACGGTAAAGGGGAGCAGTGGCAAGAGCAATGG
TTTGAGCACTATGACTCGACCGGCAAAACCGAAAAATGGGCTGATAAATGGTGCAGCTTG
GATCCAAACACACCGCTGGATGTCGGCCATGCCCATGTCTGGCATGAAAGATGGGGCGAG
AAGTACGACGGCCTTGGTGGCAGCGAAAAGTACACCGACAAGTGGGCCGAGCGTTCGGAG
GGCGACGGGTGGTCTAAATGGGGCGACAAGTGGGACGAGCACTTCGACCTGAATGGGCAT
GGCGTCAAGCAGGGGGAGACATGGTGGGCGGGCAAGCATGGGGACCGGTGGAACCGCACC
TGGGGTGAGCGGCACAACGGGTCTGGGTGGGTGCACAAGTACGGGCGCAGCAGCAGTGGC
GAGCACTGGGACACGCACGCCCCGCAGGACACGTGGTACGAGCGGTTCCCACACTTTGGG
TTCTACCACTGCTTTGAGAACTCGCCGCAACTCCGGTCCGTGAAGAGGCAGCCGCCGCCA
CCACGAAAATGA

Peptide Sequence

PEP ID

Zm00001d052977_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:206919670:206923445:-1 gene:Zm00001d052977 transcript:Zm00001d052977_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MAASNAASVSSAAPRLLLLRRRGGASGSAQHRNARFRAAAGGGSYLDMWKKAVERERRSA
DLARRLQAPPAEADAPAPAPPVEDVRRRTARFEEMLRVPREERDRVQRNQVIDRAAAALA
AARAVLKEPPAFSPPPTPPQVAETGKVGSAGGGAARGSDRNSRSAARAQLSPSAEVQDSG
GSSPHNQSSSKLGTPGPDFWSWLPPVQDSSKQKESNTGLKPSKKLDTFSSQPDLLMEKER
LADSLPLPFETAFFKKEDRSLPPFQSFAEPENVDSSADLAADKEDTFEEQFSKNAAEVAR
ALSESVGKPSHGIHLDGSMWWKEVGVERRPDGVVCKWTVIRGVSADGAVEWEDKYWEASD
RFDHKELGSEKSGRDAAGNVWREYWKESMWQDYTCGVMHMEKNADKWGQNGKGEQWQEQW
FEHYDSTGKTEKWADKWCSLDPNTPLDVGHAHVWHERWGEKYDGLGGSEKYTDKWAERSE
GDGWSKWGDKWDEHFDLNGHGVKQGETWWAGKHGDRWNRTWGERHNGSGWVHKYGRSSSG
EHWDTHAPQDTWYERFPHFGFYHCFENSPQLRSVKRQPPPPRK

Transcript Sequence

Transcript ID

Zm00001d052977_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:206919670:206923445:-1 gene:Zm00001d052977 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ACCACACGTCCACAGTCCACACTCTTCTTCTTCCTCTGATCCTCTCGGCCTCCACACCCC
CGCACACTCCCCGTGACCCCGACCCGTCCGGATAGACAGGAGCGGAGAGCCCGAGGTACA
ATGGCGGCCTCCAACGCTGCATCCGTCTCCTCGGCCGCGCCCCGCCTGCTCCTGCTCCGC
CGCCGCGGAGGAGCCAGCGGCAGCGCGCAGCACCGCAATGCGCGCTTCCGCGCCGCCGCC
GGCGGCGGGTCGTACCTGGACATGTGGAAGAAGGCGGTGGAACGGGAGCGGCGGTCGGCG
GATCTCGCGCGCAGGCTCCAGGCGCCCCCCGCCGAGGCAGACGCGCCCGCGCCCGCACCG
CCCGTGGAGGACGTGCGGCGCCGGACGGCGCGGTTCGAGGAGATGCTGCGGGTTCCGCGG
GAGGAGCGCGACCGCGTGCAGCGCAACCAGGTCATCGACCGCGCCGCGGCCGCCCTCGCC
GCCGCCCGCGCCGTGCTCAAGGAGCCGCCTGCCTTCTCGCCGCCCCCGACGCCGCCGCAG
GTGGCGGAGACGGGCAAGGTGGGATCGGCCGGGGGCGGTGCTGCTAGGGGATCAGATCGG
AATTCCCGGTCGGCGGCACGGGCACAGCTGTCGCCCTCGGCGGAAGTGCAAGACTCCGGT
GGCTCATCTCCTCACAACCAGTCAAGTTCCAAGCTTGGTACTCCAGGTCCAGATTTCTGG
TCATGGTTACCTCCAGTACAAGATAGCAGTAAACAAAAGGAAAGCAATACTGGTTTGAAG
CCATCCAAAAAATTAGATACCTTTTCCAGTCAGCCTGATCTGTTGATGGAAAAGGAACGC
TTGGCGGATTCTTTACCACTCCCTTTCGAGACAGCTTTCTTCAAGAAGGAAGATCGATCT
CTTCCTCCCTTCCAATCATTTGCTGAGCCTGAGAATGTGGATTCCTCGGCCGATCTGGCC
GCTGACAAAGAGGACACGTTCGAAGAACAGTTCTCGAAAAATGCAGCCGAGGTGGCTCGC
GCGCTCAGTGAGAGCGTCGGGAAACCATCACACGGAATACATCTAGATGGCTCAATGTGG
TGGAAGGAAGTAGGTGTAGAACGAAGACCTGATGGTGTTGTTTGCAAGTGGACCGTGATC
AGGGGAGTTAGTGCTGATGGCGCTGTTGAATGGGAAGACAAATACTGGGAGGCCTCAGAC
CGGTTCGATCATAAAGAGTTAGGCTCGGAGAAGTCTGGGCGTGATGCTGCGGGCAACGTT
TGGCGGGAATACTGGAAGGAGTCAATGTGGCAGGATTACACATGTGGGGTTATGCATATG
GAGAAGAATGCAGACAAGTGGGGACAGAACGGTAAAGGGGAGCAGTGGCAAGAGCAATGG
TTTGAGCACTATGACTCGACCGGCAAAACCGAAAAATGGGCTGATAAATGGTGCAGCTTG
GATCCAAACACACCGCTGGATGTCGGCCATGCCCATGTCTGGCATGAAAGATGGGGCGAG
AAGTACGACGGCCTTGGTGGCAGCGAAAAGTACACCGACAAGTGGGCCGAGCGTTCGGAG
GGCGACGGGTGGTCTAAATGGGGCGACAAGTGGGACGAGCACTTCGACCTGAATGGGCAT
GGCGTCAAGCAGGGGGAGACATGGTGGGCGGGCAAGCATGGGGACCGGTGGAACCGCACC
TGGGGTGAGCGGCACAACGGGTCTGGGTGGGTGCACAAGTACGGGCGCAGCAGCAGTGGC
GAGCACTGGGACACGCACGCCCCGCAGGACACGTGGTACGAGCGGTTCCCACACTTTGGG
TTCTACCACTGCTTTGAGAACTCGCCGCAACTCCGGTCCGTGAAGAGGCAGCCGCCGCCA
CCACGAAAATGAAGCCTGAAGAGATCATGCTGGCATCAGCAGCATGTGCTGTTGTGAACT
GAATGTTCAGACTGATATGAATAGAAAGGCCTGTAGAAGTTTTGCCGTATATTCTGAAAC
ACCTTTTTTCTTTTAGCCTAGAAAGATTATGCTGGTAAGCTTTTGCCCAAAGTCTAATGC
ACGCAGTTACTGCGACTTCTTCTGTGATGTTTTTTTTTTGGTGTCAGTTACCTCCTGATT
TCCCAAACACTCAGACTAGCACTGCTGGGATTGGGAATGTATCTGGCCAGTCATGAGACT
GAGATTTCCCAAAGTTTGTATGCCACAGTGCTATTCTATGGTCTAGCAGCAGGTTGGAGT
TCTGCTTAAATGAAGCAGCATGGAACATCAAGACTTCAGGGACTGAATATGCTTAAAATT
GCTCGGAATGCGATTGGTCGG