Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052971_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:4:206735661:206763689:1 gene:Zm00001d052971 gene_biotype:protein_coding transcript_biotype:protein_coding description:Camelliol C synthase
Sequence

ATGTGGAGGCTGAAGATCGGCGGCGAGGGCGGCGGGCCATGGCTGCGGTCGGCGAGCGGC
TTCACCGGCAGGCAGGTATGGGAGTTCGACCCCGACGCCGGTACGCAGGACGAGATCGCC
GAGGTTGAGAGGCTGAGGCGGGAGTTCACGGAGCGCCGCCGCTTCGACAAGAGGGCCGTG
GCGCAGGATCTCCTCTTGCGCATGCAGTACGCGAAACAAGACCATCTAAAAATGGACATT
GGTCCCGCCGCCGGCGTCAACAAACTCGGACATGGCGCGGCAGTCACGGAGGAGACCATA
CTAGCGTCGTTGAGGCGAGCCCTTGCCCAGTACTCTACTCTACAAGCACACGATGGCCAC
TGGCCTTGCGACTACAGCGGCGTCATGTTCATCATGCCTATTATGGTATTTGCACTACAT
GTCACTGGATCACTCAATACGGTTTTATCAGCAGAGCATCGACACGAGATCTGTCGCTAT
ATTTACAACCATCAGAATGAAGATGGTGGCTGGGGCATGCAAGAGGTTGGGCCAAGCACC
ATGTTTAGCTCATGCCTGAACTATGTCACCTTGAGACTTCTCGGGGAGGCGTGTGCGCAG
CATGACGCTTTGGCCAAGGGACAAGCATGGATTCTGTCTCATGGAAGTGCGGCGGCAATA
CCTCAGTGGGGAAAGATTTGGCTCTCGGTGATCGGTTTATATGACTGGAACGGCAATAAT
TCGATCGTTCCTGAGTTGTGGCTTGTTCCATATTCTCTCCCATTCCATCCAGGGCGATTC
TGGTGTTTCTGTCGGTTGATATATATGCCAATGGCTTATTTATATGGCAAGAAGTTTGTG
GGGCCAATTACACCAACCATATTATCAATAAGAAATGAAATCTATAAGATACCATATGAT
GAGGTCGATTGGAACAAAGCTCGAGATACTTGCGCTAAGGAAGACCTTCTCTACCCAAGG
ACGTTCGTGCAAAACGTCATTTGGACTTGTGTGAATAAAATCGTGGAACCATTGCTAAAT
CTTTGGCCGGCTAAGATGTTAAGAGATACAGCACTGAAGAACATCATGAATCATATCCAT
TATGAAGACGAAAGTACTAGGTACCTTTGTGTATGCCCAGTAAACAAGAATCCAAATTCA
GATGCATTCAAGCGGCACCTTCCAAGGATCTATGATTATATATGGCTTGCTGAAGATGGC
ATGAAGTTAAAGGTGTATGACGGCACGCAAGCATGGGATACAGCTTTTATTGTCAAAGCA
TATTGCTCGACTGACCTGGTTCATGAGTTTTCTCCAACACTCAGGAAGGCTCATGAGTTC
ATAAAAAGTTTGCAGATCCCTGAAAACCAACCCGACCATGAAAATTATTACCGCCATAGA
TCAAAGGGTTCATGGGCTCATTCAACATTAGACAATGGATGGTCTGTATCTGATTCTACA
GCAGAAGCAATTCAGGCATTGTTGTTGTTATCAAAGTTCTCTTCCAATCTTGTGGGGGAT
CCCATAAAAGAAGAAAGATTATTTGATGCAGTGGATTGCTTGCTTTCTTTTATGAATAAA
GATGGTACATTTTCAACATACGAGCGTAAGAGAACTGCATCTTTGTTGGAGGTTCTCAAC
CCTTCCGAGACTTTTCTAAACATTGTTGTTGATCACCCGTCGGTCGAATGCACGTCATCT
GCGATTCAAGCTCTTGTTATGTTCAGAGAAATGTATCCAAGGTATCGCGATCAAGAGATA
AAAAAATGTATTAAAGGAGCATCTAAATTTATTGAGAGCAAACAACAAAAGGATGGCACA
TGGTTTGGCACTTGGGGTGTATGTTACACTTATGGGACATTATTTGCAGTGCAAGGATTA
GTTGTTGCTGGAAGAACTTATGAAAACAGTTCTTCTATTAGGAAAGCATGTAGGTTTCTA
TTGTCAAAGCAGCTAATCACGGGTGGATGGGGTGAGACATATCCGTCTAATGGAACTGCG
GTCTATGCAGAGGCCAGTAGTCCTCATGTAGTGAATACAGCTTGGGCAATGTTGGCTTTA
ATTTATGCTGGACAGGTTCAGCGAGATCCAACACCATTGTATGGTGCTGCAAAAGAACTG
ATCAATATGCAACAAGAGTCAGGCGAGTTTCCCCAACAAGAACACATTGGGAGCTTCAAT
TGTTCCTTTTACTTCAACTATGGAAACTACCGTAACTTGTTCCCAATATGGGCTCTTGGA
GAGTTTCGGAGACGAATTGTTGCAGAAAAGAAGAGGAACCAACAAACATGA

Peptide Sequence

PEP ID

Zm00001d052971_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:4:206735661:206763689:1 gene:Zm00001d052971 transcript:Zm00001d052971_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Camelliol C synthase
Sequence

MWRLKIGGEGGGPWLRSASGFTGRQVWEFDPDAGTQDEIAEVERLRREFTERRRFDKRAV
AQDLLLRMQYAKQDHLKMDIGPAAGVNKLGHGAAVTEETILASLRRALAQYSTLQAHDGH
WPCDYSGVMFIMPIMVFALHVTGSLNTVLSAEHRHEICRYIYNHQNEDGGWGMQEVGPST
MFSSCLNYVTLRLLGEACAQHDALAKGQAWILSHGSAAAIPQWGKIWLSVIGLYDWNGNN
SIVPELWLVPYSLPFHPGRFWCFCRLIYMPMAYLYGKKFVGPITPTILSIRNEIYKIPYD
EVDWNKARDTCAKEDLLYPRTFVQNVIWTCVNKIVEPLLNLWPAKMLRDTALKNIMNHIH
YEDESTRYLCVCPVNKNPNSDAFKRHLPRIYDYIWLAEDGMKLKVYDGTQAWDTAFIVKA
YCSTDLVHEFSPTLRKAHEFIKSLQIPENQPDHENYYRHRSKGSWAHSTLDNGWSVSDST
AEAIQALLLLSKFSSNLVGDPIKEERLFDAVDCLLSFMNKDGTFSTYERKRTASLLEVLN
PSETFLNIVVDHPSVECTSSAIQALVMFREMYPRYRDQEIKKCIKGASKFIESKQQKDGT
WFGTWGVCYTYGTLFAVQGLVVAGRTYENSSSIRKACRFLLSKQLITGGWGETYPSNGTA
VYAEASSPHVVNTAWAMLALIYAGQVQRDPTPLYGAAKELINMQQESGEFPQQEHIGSFN
CSFYFNYGNYRNLFPIWALGEFRRRIVAEKKRNQQT

Transcript Sequence

Transcript ID

Zm00001d052971_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:206735661:206763689:1 gene:Zm00001d052971 gene_biotype:protein_coding transcript_biotype:protein_coding description:Camelliol C synthase
Sequence

AGGTAGTAAAAGCTAGCCTCGCCAACAACACTGACTGTGGGCAGCTAGCTGATCATGTGG
AGGCTGAAGATCGGCGGCGAGGGCGGCGGGCCATGGCTGCGGTCGGCGAGCGGCTTCACC
GGCAGGCAGGTATGGGAGTTCGACCCCGACGCCGGTACGCAGGACGAGATCGCCGAGGTT
GAGAGGCTGAGGCGGGAGTTCACGGAGCGCCGCCGCTTCGACAAGAGGGCCGTGGCGCAG
GATCTCCTCTTGCGCATGCAGTACGCGAAACAAGACCATCTAAAAATGGACATTGGTCCC
GCCGCCGGCGTCAACAAACTCGGACATGGCGCGGCAGTCACGGAGGAGACCATACTAGCG
TCGTTGAGGCGAGCCCTTGCCCAGTACTCTACTCTACAAGCACACGATGGCCACTGGCCT
TGCGACTACAGCGGCGTCATGTTCATCATGCCTATTATGGTATTTGCACTACATGTCACT
GGATCACTCAATACGGTTTTATCAGCAGAGCATCGACACGAGATCTGTCGCTATATTTAC
AACCATCAGAATGAAGATGGTGGCTGGGGCATGCAAGAGGTTGGGCCAAGCACCATGTTT
AGCTCATGCCTGAACTATGTCACCTTGAGACTTCTCGGGGAGGCGTGTGCGCAGCATGAC
GCTTTGGCCAAGGGACAAGCATGGATTCTGTCTCATGGAAGTGCGGCGGCAATACCTCAG
TGGGGAAAGATTTGGCTCTCGGTGATCGGTTTATATGACTGGAACGGCAATAATTCGATC
GTTCCTGAGTTGTGGCTTGTTCCATATTCTCTCCCATTCCATCCAGGGCGATTCTGGTGT
TTCTGTCGGTTGATATATATGCCAATGGCTTATTTATATGGCAAGAAGTTTGTGGGGCCA
ATTACACCAACCATATTATCAATAAGAAATGAAATCTATAAGATACCATATGATGAGGTC
GATTGGAACAAAGCTCGAGATACTTGCGCTAAGGAAGACCTTCTCTACCCAAGGACGTTC
GTGCAAAACGTCATTTGGACTTGTGTGAATAAAATCGTGGAACCATTGCTAAATCTTTGG
CCGGCTAAGATGTTAAGAGATACAGCACTGAAGAACATCATGAATCATATCCATTATGAA
GACGAAAGTACTAGGTACCTTTGTGTATGCCCAGTAAACAAGAATCCAAATTCAGATGCA
TTCAAGCGGCACCTTCCAAGGATCTATGATTATATATGGCTTGCTGAAGATGGCATGAAG
TTAAAGGTGTATGACGGCACGCAAGCATGGGATACAGCTTTTATTGTCAAAGCATATTGC
TCGACTGACCTGGTTCATGAGTTTTCTCCAACACTCAGGAAGGCTCATGAGTTCATAAAA
AGTTTGCAGATCCCTGAAAACCAACCCGACCATGAAAATTATTACCGCCATAGATCAAAG
GGTTCATGGGCTCATTCAACATTAGACAATGGATGGTCTGTATCTGATTCTACAGCAGAA
GCAATTCAGGCATTGTTGTTGTTATCAAAGTTCTCTTCCAATCTTGTGGGGGATCCCATA
AAAGAAGAAAGATTATTTGATGCAGTGGATTGCTTGCTTTCTTTTATGAATAAAGATGGT
ACATTTTCAACATACGAGCGTAAGAGAACTGCATCTTTGTTGGAGGTTCTCAACCCTTCC
GAGACTTTTCTAAACATTGTTGTTGATCACCCGTCGGTCGAATGCACGTCATCTGCGATT
CAAGCTCTTGTTATGTTCAGAGAAATGTATCCAAGGTATCGCGATCAAGAGATAAAAAAA
TGTATTAAAGGAGCATCTAAATTTATTGAGAGCAAACAACAAAAGGATGGCACATGGTTT
GGCACTTGGGGTGTATGTTACACTTATGGGACATTATTTGCAGTGCAAGGATTAGTTGTT
GCTGGAAGAACTTATGAAAACAGTTCTTCTATTAGGAAAGCATGTAGGTTTCTATTGTCA
AAGCAGCTAATCACGGGTGGATGGGGTGAGACATATCCGTCTAATGGAACTGCGGTCTAT
GCAGAGGCCAGTAGTCCTCATGTAGTGAATACAGCTTGGGCAATGTTGGCTTTAATTTAT
GCTGGACAGGTTCAGCGAGATCCAACACCATTGTATGGTGCTGCAAAAGAACTGATCAAT
ATGCAACAAGAGTCAGGCGAGTTTCCCCAACAAGAACACATTGGGAGCTTCAATTGTTCC
TTTTACTTCAACTATGGAAACTACCGTAACTTGTTCCCAATATGGGCTCTTGGAGAGTTT
CGGAGACGAATTGTTGCAGAAAAGAAGAGGAACCAACAAACATGATTGTTTTAGGCATCA
ACAAATTCGGGGTGAAAGCTTGTAAGGGGCTCAAGTTTAACATGTGGTGAAAGACATGTC
AATATACTAAAGCTGATGTCCATCTGGCTAAACCATATGTACATATTTTTACTATGGAAA
CAACGATCCATATGTATATATGGAATAAAGGGCCACATATATGACCGTTTCGCCATCTAT
ATTATATTTTTGAAGTGAAAAATACAAGACTTTG