Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052961_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:4:206347511:206358362:-1 gene:Zm00001d052961 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein ROOT HAIR DEFECTIVE 3 homolog 2
Sequence

ATGGACGCCACGGGGGCCGTCGGAGTCGGCGGCCGGGACGGCGAGTGCCACGCGGCGCAG
GTGGTGGGCGCGGACGGAGAGATGGACGCGGCCGCGATCGAGCGGTTCGCCGCCGCCGCG
GGGCTCCAGGGGCGGGGCCTCTCCTACGCCGTCGTCTCAATCCTCGGACCCCAGGGCAGC
GGGAAAAGTACCTTGCTCAACCATCTCTTCGGGACAAGCTTCAGGGAAATGGATGCCTTG
AAAGGAAGGCACCAGACCACCAAGGGCATTTGGATCGCCAAGGCTGCTGGGATCGAGCCG
TTCACTGTTGTGCTGGACCTGGAGGGGACGGACGGGAGGGAGCGAGGGCAGGATGATACA
GCTTTCGAGAAGCAGAGTGCTCTGTTTGCTCTTGCAGTTTCAGACATTGTTATGATAAAT
TTGTGGTGCCATGACATTGGGCGAGAACATGCTGCTAACAGGCCTCTTTTGAGAACAGTA
TTCCAGGTCTTGATGCGTTTATTTAGCCCTCGCAAGACGACACTACTACTTGTTATCCGT
GATAAAACAAAGACTCCACTAGAGTACCTAACACAAGCTCTCAAGGAGGATATTCAGAAG
ATATGGGACTCTGTTCAGAAACCAGAAGCTTACAAGGAAGCAGCGCTCAGTGATTTCTTC
GATGTGGAGGCCACTGCTCTATCGAGTTATGAAGAGAAAGAAGAACTATTTAAGGAGCAG
GTTGGACAACTGAGGCAGAGGTTTTATCATTCAATTGCACCAGGTGGTCTTGCAGCCGAT
AGAAGAGGTGTGATACCTGCTTCAGGCTTTTCTCTCAGTGCACTGCAGATTTGGGAAGTA
ATACGTGAAAATAAGGACCTCAACCTTCCTGCTCACGAGGTCATGGTTGCTACTGTTCGA
TGTGAAGAGATTGCAAATGAAAACCTCAAACAGTTTTTGTCTGATAAGGGTTGGTTGGAT
CTAAATGCAGCTGTAGAATCTGGTCTGCCACCAAGCTTCGGAATGAGGCTCAGTGCTATT
CTCGACTCTTATCTATCCGAGTATGACATGGAAACCATGTATTTTGATGAAGGTGTACGA
GCTGCTAAGCGGCAACAATTGGAATCTTCAATGCTAGATCACGCATATCCTGTTATCGAG
AGAGTAATGGAGCACCTGCATCTTGTGGCTCTCGACAAATTCAAAGGTGACCTCGAACAA
TCATTAAGGCATACAGAAGGATTTGCAGAATCAGTTCGTCGGTGTTCTCAAACTTCAATG
GCAGAGTTTGATGCTGGAATGACAGTGATGTCAGACCCTAGCTTTTTTTATGCAGATACA
GCAGTTAAACATGTGCAGTGGGATGCTTCAAAAGTTAGGAATAAACTGCAAGAGCATATA
CAAGCTCATGTAGAATGTATTAGGAACGCAAAATTGGCTGAACTGAGAGCTAACTTTGAG
AAGAAGCTGTCAGACGCAATTTCTGGGCCTGTACAATCCATACTGGAAACTGGCGAGAGA
GACTCCTGGGCATGCATTAGGAGACTATATAGGCGTGAGATTGAAAATGCTGCTCTTTCA
TTCTCAGCTTCCCTTTCTGAGTTTGACCTAGACCAAACAATTTCCAATAAGATGGTCTCA
GATTTGAGGGAATATGCAAGAAGTGTAGTAGAAACTAAAGCTAGAGAAGAAGCTGGAAAT
GTTCTGATGCGCATGAAAGAAAGGTTTTTCACTGTGTTGAGCCATGATAAGGACTCGATG
CCAAGGTCATGGATGCGAGATGAGGATATCCGTACAATCACTAGAGAAGCACGCTTAGGG
GCTTTAAGACTTATGTCTGTAATGGCAGCTATTCGGTTAGATGATAATCCAGACAAAATA
GAACGAGCTCTGACTACTGCTCTTTTAGATGGGGGCCCCCTTTCTCACAAGAGGAGTATA
GAATTTGCTTCTGATCCTCTTGCTTCAAGCACGTGGGAAGAGGTTTTTCTGCCTACCCTA
CACTTGGATATTTATGGTTTAGGATGTTCAACAGAGAATATTTTTGGAATGTTTTATGTA
TTTGTGCAGGTTTCACCAAAGGATACACTGATTACGCCAGTGCAGTGTAAATCCATCTGG
AGGCAATTCAAAGCAGAGACAGAGTATTCTGTTGCGCAAGCAATGTCTATGCAGGAAGCA
CAAAGGCGTAGCAAGAACTGGTTGCCACCTGCATGGACTATTCTGCTTCTGGCAATACTA
GGCTACAACGAATTTATGTTTCTTCTTAGGAATCCATTGTACCTTCTGGGGCTCTTTGTT
GCCTTTCTATCTGCTCTTCTTACGATTTTATCAAGACTGCTCCCAACAATCATAGACATT
ATGATGCAAATAATTAATATGAAGCACAAGCACAAGTCCCCACATCCATCTCGTCATCCC
CAACATATCCATGCTCAGAGCTTCATGAACCAGACGTGGGGACGGGCCCAAGTGCGGTAC
CAGTCTCCTGACTCGCCATCCTCATCTTCCTCCGTGGGCTCGAACAGTGGTGATGACTCT
TGA

Peptide Sequence

PEP ID

Zm00001d052961_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:4:206347511:206358362:-1 gene:Zm00001d052961 transcript:Zm00001d052961_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein ROOT HAIR DEFECTIVE 3 homolog 2
Sequence

MDATGAVGVGGRDGECHAAQVVGADGEMDAAAIERFAAAAGLQGRGLSYAVVSILGPQGS
GKSTLLNHLFGTSFREMDALKGRHQTTKGIWIAKAAGIEPFTVVLDLEGTDGRERGQDDT
AFEKQSALFALAVSDIVMINLWCHDIGREHAANRPLLRTVFQVLMRLFSPRKTTLLLVIR
DKTKTPLEYLTQALKEDIQKIWDSVQKPEAYKEAALSDFFDVEATALSSYEEKEELFKEQ
VGQLRQRFYHSIAPGGLAADRRGVIPASGFSLSALQIWEVIRENKDLNLPAHEVMVATVR
CEEIANENLKQFLSDKGWLDLNAAVESGLPPSFGMRLSAILDSYLSEYDMETMYFDEGVR
AAKRQQLESSMLDHAYPVIERVMEHLHLVALDKFKGDLEQSLRHTEGFAESVRRCSQTSM
AEFDAGMTVMSDPSFFYADTAVKHVQWDASKVRNKLQEHIQAHVECIRNAKLAELRANFE
KKLSDAISGPVQSILETGERDSWACIRRLYRREIENAALSFSASLSEFDLDQTISNKMVS
DLREYARSVVETKAREEAGNVLMRMKERFFTVLSHDKDSMPRSWMRDEDIRTITREARLG
ALRLMSVMAAIRLDDNPDKIERALTTALLDGGPLSHKRSIEFASDPLASSTWEEVFLPTL
HLDIYGLGCSTENIFGMFYVFVQVSPKDTLITPVQCKSIWRQFKAETEYSVAQAMSMQEA
QRRSKNWLPPAWTILLLAILGYNEFMFLLRNPLYLLGLFVAFLSALLTILSRLLPTIIDI
MMQIINMKHKHKSPHPSRHPQHIHAQSFMNQTWGRAQVRYQSPDSPSSSSSVGSNSGDDS

Transcript Sequence

Transcript ID

Zm00001d052961_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:206347511:206358362:-1 gene:Zm00001d052961 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein ROOT HAIR DEFECTIVE 3 homolog 2
Sequence

AACGCGACACCTGTCTGCCTTCGCGGCGCCTCCCATTCTCTCTCTGACTCTCTCACTCGC
CGTCGCGTCGCTTCCGGGTTCCGGTTCCGGCCCTGCTCGTGGGTTGCTTTGCTTCGGTTC
TCCGGCGAGCGAGAGGGGATCGATGGACGCCACGGGGGCCGTCGGAGTCGGCGGCCGGGA
CGGCGAGTGCCACGCGGCGCAGGTGGTGGGCGCGGACGGAGAGATGGACGCGGCCGCGAT
CGAGCGGTTCGCCGCCGCCGCGGGGCTCCAGGGGCGGGGCCTCTCCTACGCCGTCGTCTC
AATCCTCGGACCCCAGGGCAGCGGGAAAAGTACCTTGCTCAACCATCTCTTCGGGACAAG
CTTCAGGGAAATGGATGCCTTGAAAGGAAGGCACCAGACCACCAAGGGCATTTGGATCGC
CAAGGCTGCTGGGATCGAGCCGTTCACTGTTGTGCTGGACCTGGAGGGGACGGACGGGAG
GGAGCGAGGGCAGGATGATACAGCTTTCGAGAAGCAGAGTGCTCTGTTTGCTCTTGCAGT
TTCAGACATTGTTATGATAAATTTGTGGTGCCATGACATTGGGCGAGAACATGCTGCTAA
CAGGCCTCTTTTGAGAACAGTATTCCAGGTCTTGATGCGTTTATTTAGCCCTCGCAAGAC
GACACTACTACTTGTTATCCGTGATAAAACAAAGACTCCACTAGAGTACCTAACACAAGC
TCTCAAGGAGGATATTCAGAAGATATGGGACTCTGTTCAGAAACCAGAAGCTTACAAGGA
AGCAGCGCTCAGTGATTTCTTCGATGTGGAGGCCACTGCTCTATCGAGTTATGAAGAGAA
AGAAGAACTATTTAAGGAGCAGGTTGGACAACTGAGGCAGAGGTTTTATCATTCAATTGC
ACCAGGTGGTCTTGCAGCCGATAGAAGAGGTGTGATACCTGCTTCAGGCTTTTCTCTCAG
TGCACTGCAGATTTGGGAAGTAATACGTGAAAATAAGGACCTCAACCTTCCTGCTCACGA
GGTCATGGTTGCTACTGTTCGATGTGAAGAGATTGCAAATGAAAACCTCAAACAGTTTTT
GTCTGATAAGGGTTGGTTGGATCTAAATGCAGCTGTAGAATCTGGTCTGCCACCAAGCTT
CGGAATGAGGCTCAGTGCTATTCTCGACTCTTATCTATCCGAGTATGACATGGAAACCAT
GTATTTTGATGAAGGTGTACGAGCTGCTAAGCGGCAACAATTGGAATCTTCAATGCTAGA
TCACGCATATCCTGTTATCGAGAGAGTAATGGAGCACCTGCATCTTGTGGCTCTCGACAA
ATTCAAAGGTGACCTCGAACAATCATTAAGGCATACAGAAGGATTTGCAGAATCAGTTCG
TCGGTGTTCTCAAACTTCAATGGCAGAGTTTGATGCTGGAATGACAGTGATGTCAGACCC
TAGCTTTTTTTATGCAGATACAGCAGTTAAACATGTGCAGTGGGATGCTTCAAAAGTTAG
GAATAAACTGCAAGAGCATATACAAGCTCATGTAGAATGTATTAGGAACGCAAAATTGGC
TGAACTGAGAGCTAACTTTGAGAAGAAGCTGTCAGACGCAATTTCTGGGCCTGTACAATC
CATACTGGAAACTGGCGAGAGAGACTCCTGGGCATGCATTAGGAGACTATATAGGCGTGA
GATTGAAAATGCTGCTCTTTCATTCTCAGCTTCCCTTTCTGAGTTTGACCTAGACCAAAC
AATTTCCAATAAGATGGTCTCAGATTTGAGGGAATATGCAAGAAGTGTAGTAGAAACTAA
AGCTAGAGAAGAAGCTGGAAATGTTCTGATGCGCATGAAAGAAAGGTTTTTCACTGTGTT
GAGCCATGATAAGGACTCGATGCCAAGGTCATGGATGCGAGATGAGGATATCCGTACAAT
CACTAGAGAAGCACGCTTAGGGGCTTTAAGACTTATGTCTGTAATGGCAGCTATTCGGTT
AGATGATAATCCAGACAAAATAGAACGAGCTCTGACTACTGCTCTTTTAGATGGGGGCCC
CCTTTCTCACAAGAGGAGTATAGAATTTGCTTCTGATCCTCTTGCTTCAAGCACGTGGGA
AGAGGTTTTTCTGCCTACCCTACACTTGGATATTTATGGTTTAGGATGTTCAACAGAGAA
TATTTTTGGAATGTTTTATGTATTTGTGCAGGTTTCACCAAAGGATACACTGATTACGCC
AGTGCAGTGTAAATCCATCTGGAGGCAATTCAAAGCAGAGACAGAGTATTCTGTTGCGCA
AGCAATGTCTATGCAGGAAGCACAAAGGCGTAGCAAGAACTGGTTGCCACCTGCATGGAC
TATTCTGCTTCTGGCAATACTAGGCTACAACGAATTTATGTTTCTTCTTAGGAATCCATT
GTACCTTCTGGGGCTCTTTGTTGCCTTTCTATCTGCTCTTCTTACGATTTTATCAAGACT
GCTCCCAACAATCATAGACATTATGATGCAAATAATTAATATGAAGCACAAGCACAAGTC
CCCACATCCATCTCGTCATCCCCAACATATCCATGCTCAGAGCTTCATGAACCAGACGTG
GGGACGGGCCCAAGTGCGGTACCAGTCTCCTGACTCGCCATCCTCATCTTCCTCCGTGGG
CTCGAACAGTGGTGATGACTCTTGAAGCTGTGCATAGAACATAGAACTTCCATGTGGATG
TCCCAGTACTTAGATAGGTAGCCTTCAGGTTCCGGGGTTTCTTGGTAACTAGGAACCATT
GTCGTGTCATCGTGTGCTTCAAACTTTGATGTGTAAATGTATAATGTAAGATTAAAACCA
TAACTTTTACGTACCCCAGTTACGAATTT