Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052941_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:4:205569427:205574197:-1 gene:Zm00001d052941 gene_biotype:protein_coding transcript_biotype:protein_coding description:zinc knuckle (CCHC-type) family protein
Sequence

ATGCAGAAAATAAGATGCTACGTGTGTAACCAGAAGGGCCATCTATGTTGTTCCGACTTC
TCTGACGATTGTCCGAAACAAATTAGCTGTTATAATTGTGCCCAATCTGGTCATTCTGGT
CTGGGATGTGCCAAACGCAGGGAAACCAGTGCTGTCACAACTCCAACCTTATGCTTCAAA
TGTGGCGAGGAAGGTCACTTTGCACGTGGCTGCACAAAGAACGCTAAGTCCGATCGGTCG
AAAGGCAAGTCATCGTCGCATATTCAGAGGAAGGAGAAATGGAAAAAGGCTTCCAGTAGT
GCTAGATCAGCTCCTTATGACGCCCGAAAAACAAGCAAAAGGAAAAGCCCCCATCTCGAG
GAAAGAGTGGGCACACCTCGTCATAAACCCAAATCGAGGGGTGGCTGGACTGGTGGAGAT
GATCTACCATTGAAGAAGTACAAATCCAATGGGTGGGGCTCTCCATCTACTCCCAAGAAG
TCTTACGCAAACCACCAGTTCTTGTCTGGTTGCGACTACCTCACTCCCCAGCCTTCACGA
AGGCACAACTACCATGGTACCATGTCTTCACCGAATCACCAATTCTTGTCTGGCTGTGAC
TACTTCACTCCCGAGTCTTCACGAGGGCACAGCCATGGTACCATGTCACCGAACTGGAAT
TATTCACCCAGCGCCAGGAAGCATGGGTTCTCGTCATCAAGATTCGCCGCGGCTGCCGCC
AGCAACACCCATGTCCGGTTCGGGAGAAATTAG

Peptide Sequence

PEP ID

Zm00001d052941_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:4:205569427:205574197:-1 gene:Zm00001d052941 transcript:Zm00001d052941_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:zinc knuckle (CCHC-type) family protein
Sequence

MQKIRCYVCNQKGHLCCSDFSDDCPKQISCYNCAQSGHSGLGCAKRRETSAVTTPTLCFK
CGEEGHFARGCTKNAKSDRSKGKSSSHIQRKEKWKKASSSARSAPYDARKTSKRKSPHLE
ERVGTPRHKPKSRGGWTGGDDLPLKKYKSNGWGSPSTPKKSYANHQFLSGCDYLTPQPSR
RHNYHGTMSSPNHQFLSGCDYFTPESSRGHSHGTMSPNWNYSPSARKHGFSSSRFAAAAA
SNTHVRFGRN

Transcript Sequence

Transcript ID

Zm00001d052941_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:205569427:205574197:-1 gene:Zm00001d052941 gene_biotype:protein_coding transcript_biotype:protein_coding description:zinc knuckle (CCHC-type) family protein
Sequence

GCCCATTGGGACAGCAGAATCGGTGTTAACTGAAAATGGGGCTGATGCCCCTGCATCTGA
TAATATGGTTCTGCGGAAGCTCCTTCGCATACCGAGATACTTTGATCCTGGGGAAACACT
GTTGGAGACTTGTTTTAATTGTAGCGAGGAAGGGCATGTAGCTGCAAACTGTCCATTGGA
AAAGCGAAAGAAGCCTTGCTTTGTTTGTGGGTTGTTTGGGCACAATGCAAAGCAGTGCAC
GCAGGGTCAAGACTGTTTTATCTGTAAAAAAGGAGGCCATATGGCAAAGGACTGCCCTGA
TAAGCACAGGAGGAATGATCATCAATCCACATTATGTTTAAAATGTGGAGAAATAGGTCA
TGATATGTTTGGATGTACCAATGATTACCCACCAGATGATATCGAGGTAGTGTTTCTTTG
TCTTGTTTCAGCTAATTTGTTATCTTGTTGCCATAATGGGATTTTTGTTTGTTAGCATTT
GTTTTTCAGTCTCTATTTCCCTTTAGTGTTGGTGTGAAGAAATGCCTACAAAGGAATTAA
TTATGAGTTACTTTTTTTGAGTGCAAATTGTTGCAGGCTAGGTGACTAGGCTGTAACTGT
AAAAATATATGTTTGATTAATGTTTCTGTATGTAATACTAGGTATATTTGATGATGTGTG
AAAGCAATAGAGATAGCGCAAGATAATAGGTTGACTGATTGGAGAGACCTATGTACATAT
ATAGGGGAGGTCTTGTGGCTTATGGAAACAGAACCAAACGAGATCTCCCCGTATCTCGCT
AACCATATACAAGGGCTGACCTGCTATACCTGACACATACCCATACCATACACACACACA
CTGTATATGACACTCTTAACATATACAAGGGCTGGTCTGCTATACGTGGCATGTACCCAT
ACCATACACACACTGACACACACACACACACACCATATATGGCAGTCTAACACCCTCCAC
AGTCACAACGACGATGGGACGAACGTATATGGCGGTCTAACATATACAAGGGCTGGCCTG
CTGTACCTGACATGTACCCATCTCTCTCTCTCTCTCCCTCTCTCGCACGGGCACACACAC
ACCATATATGGTAGTCTAACACCCTCAGTCTAATACCCTCCATAGTCACAACGGACCACA
GGGCAGAGTGTCACCGCTGTTCCACTTACTGCATTTGTCGCGGCGGCATAGTGAGAGCGG
CGATGGGAATGGCGGTCGAGGTAGGAGAGCTGTAGAGGTCGGAGCTAGAGGCGTGGAGGC
TGGTGGCTGAGCGTCGTTAGTGTTGGCGGCCTCGACATGAAGTGCGGTGGCTGGGGGAAC
TATCGCCATGTGAGCTCTTCAAGAAGGAGGTCTTTGCGCGCCCGCAAAATAGATGGGAAG
GGTTGTCCGCAACAAAGATGAAGCTCAATAGCTTCGAAACAACCGTTGAGACAATGTAGG
ACGTTGAGGATGAGGCTGCAGTCTGAGACAAGTTTCGTCGAGGTCACTGAGGGTGTCAAC
CATGCCTTTGAGCTTGCGGTAGTAGTCGATGATGGTGAAGTCCCCTGGGTGAAGGTTTAG
AAGGCGACGTCGAGGGAGAGGGCATGAGTTTTGCGGTTGCTGATGAACTGCCTCAACGAG
CTCGTTGGAGATGGTGTTGATCCACGTCCGCACGACGCAATCCATGCGGTCCTAGTCGAG
GGAGACGAGGGCAGAAACGTTAGAGGACGTGGCCTTCAAGGGAGTACTGACTGACGGTGA
TGAGGAACGACTTGTGCTAGCAGGCATAGAACGTCGAGGACATGACACATGAGAGTGCGA
ATGTTGTGCACAACAACAACCTGGATGTGGAGATTGAGGAGTGCAACTGCCTCATGAAAA
AGGGTATCGTGGGTGTGTGGCGCATCAACGACAGAGGCGTTGTCCTCGAGGTCAAGGTTG
GTGTCGTCCGGAGGCGGTTTGAACACAACATGTGAACAAGCGGCATGGTAGAGGGCGGTG
CTGATGCGAGCAGCCACTGCGTCGTGCTTAGCCTCAGAAGCACAAGCAAGGATGGCGATG
CTGGTGGCTTGGGCCTTGCACTCGCGTTCCTACTTGGCAAGGCGAGCAGCATCAGCCTAT
TGGAGAGCAGCAGTGGCGGCGGCAGGCAGATCGACGGTGATTGTGCTGGTGCTGGCAGCT
TCACTAGAAGCAGTAGCGCCTCTTGGCTGCGCAGGAGGGTCGCCAGCCATAGAGCTGGTG
TGGCGGATGACACACAAGCAGGGAGCAGCGGCAGCGAGAAGCGGAAGGCTAAACCTAGGG
ATACCATGAAAGCAATAGAGCTACCGTAGGATATATAATGTATGTAATGTATATGTATTT
GTTTATATGTGTATGCACACAAGCACACACAATATATACGAGGGTCAGCCTGCTATACTA
CCTATACCATTTATACACACCATATATGGCAGTCTAACAACATGCCTTCCATTCCATAAC
AAGATCCCTGAAACTTGCATATGCAATTTTTTTGAATCTACACCGTATATTACAGGATAA
GATAGGTGCTCTCTATGTAATACTTAACTATTTGTGCAGTGCAATAGTGTCCCAGCTGCA
ATGTTAGAGTCACAAAGCCATGGATTATGTAGAAGAGCTTACCCCTTATAATTGCATTTT
TGATTATGCAGAAAATAAGATGCTACGTGTGTAACCAGAAGGGCCATCTATGTTGTTCCG
ACTTCTCTGACGATTGTCCGAAACAAATTAGCTGTTATAATTGTGCCCAATCTGGTCATT
CTGGTCTGGGATGTGCCAAACGCAGGGAAACCAGTGCTGTCACAACTCCAACCTTATGCT
TCAAATGTGGCGAGGAAGGTCACTTTGCACGTGGCTGCACAAAGAACGCTAAGTCCGATC
GGTCGAAAGGCAAGTCATCGTCGCATATTCAGAGGAAGGAGAAATGGAAAAAGGCTTCCA
GTAGTGCTAGATCAGCTCCTTATGACGCCCGAAAAACAAGCAAAAGGAAAAGCCCCCATC
TCGAGGAAAGAGTGGGCACACCTCGTCATAAACCCAAATCGAGGGGTGGCTGGACTGGTG
GAGATGATCTACCATTGAAGAAGTACAAATCCAATGGGTGGGGCTCTCCATCTACTCCCA
AGAAGTCTTACGCAAACCACCAGTTCTTGTCTGGTTGCGACTACCTCACTCCCCAGCCTT
CACGAAGGCACAACTACCATGGTACCATGTCTTCACCGAATCACCAATTCTTGTCTGGCT
GTGACTACTTCACTCCCGAGTCTTCACGAGGGCACAGCCATGGTACCATGTCACCGAACT
GGAATTATTCACCCAGCGCCAGGAAGCATGGGTTCTCGTCATCAAGATTCGCCGCGGCTG
CCGCCAGCAACACCCATGTCCGGTTCGGGAGAAATTAGCTGGATGCACGCGCCTGATATT
GTTGTTCGTTTTAGCCATAGATAGATACCAATTATCTCCTGGGGATGAACTCTACCTGTC
GTCGGTTCATGCCCTTTCGATAGTTGTTTGTTCTGAGATTATTATATATGTAATCGTGGT
TCAAACTATTTATTATTTTTTTTTACTGTCTTCCATGGCATGGCGTTGATGCCTTTTGCA
AAAACGGCAACTGAAAGTCTGTAACTGTGCTTTGAG