Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052937_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:205501809:205504770:-1 gene:Zm00001d052937 gene_biotype:protein_coding transcript_biotype:protein_coding description:OSJNBb0045P24.5 protein
Sequence

ATGGGTGATTCCACTAGTACGGGCTTCGCGGCGGCCCTGGAGCTGTGGCAAGAACACCAG
CTGAGCATCCTCGTCGTCGCGAGCCTCGCCATCCAGTGGTTCCTCTTCGTCTTCGCCCCG
CTTCGACAGCATCGGATCCCAGGTCTGCTCAGGCTCTCCATCTGGCTGGCCTACCTGGGC
AGCGACGCCGTGGCCATCTACGCCCTCGCCACCCTCTTCAACTCCCACCGGTGCGACACC
GACACCGGCCGCCCCGGCGTGGAGCTGCTGTGGGCGCCAATCCTGCTGGTGCACCTGGGC
GGCCAGGACAGCATCACGGCCTACAACATCGAAGACAACGAGCTATGGCGGCGGCATGTC
GTAACAGCGGTGTCTCAGGTCGCCGCTGCGATCTATGTGTTCGTCAAGGCGTGGCCGAAA
TCCCTGGTGACTACTGCTCACCAAGCAGTTAACCAAGCCACCCTTGACAAGGTAAATGCC
ATCCAGGCCCATAACGAAGAGATGGAGGCTTACGGGAGAATCTTCACACCAGCACTTCTT
CTGTTCTTCTGCGGGATCACCAAATGCGTGTTCAAGCCCTGGGACCTCAAGAGAGTCAGC
GTCAACAGCCTCGTCGACTCTTCATCGGGCTCGGAAGAGAAGGGCGGCGAGAGTGAGATG
AATTCGCTTCAGGGGTACGTGGGAGCTGCGACACGGTATTTCGAGTCCCGCGGCCATGGC
AGAGGAGCAGGACTGCAGGAGGATGACGGCGACGACGACACTTGTAAAGCAGGGGAAGTT
TGGAAGCCCTACAACCTATGCGTGGACCTGGCGCCCCCTTACTCCGGCCGGCTGAGCTGC
CTGAAACACCTGGCGCGCAGCCCAGCGGACGAAGCCCATCGCCTGGTGAAATCCAGCCTC
TCCGCGACGTTCCACCAGCTCTACACCAAGGAATCGCTGAAGCTGCACGACATCTCGCAT
TTCGTCTTCACGAACAACGCCGCCTTGAACCGCTGGAAGGTGCTCACCTCGGCTCGAGGG
CTCCGGACGGTAGCCGCGGCCACGCTGCTCGGTGCGATCGCGGTGTTCCACTACGGCGGC
GGCGCCGCCGACCAGGTCAAGGCCGACGTCACCGTCACGTACGCGCTGCTGTGGTCTGCG
TTTGTGATGGAGTACGTCTTGCCCACCGTGATCCACCATACGTTCGGCAGGGTACAGCGG
CTGTTCACCGGGCACCGGACGTGGCCGGACCAGGTCGCGCAGTACAACCTCATGGGGTAC
GTGGCACGCAGAAGGAAGCACTCGTGGCTCATGGAGGTGGTAGGCTGGCTCGGCTGCAGG
GACCTGGTCGACCAGCTATGGACCATGGACCCGTGCAAGGGCGCTTCGTCCAGGGAGATC
ACCGGCCTTGTCCACGGCCACGTCGCCGGAGGGTGGATGGAGGGTCACATAGCCGGCGCG
GACTCGTTCCGGGCGTTCAACGACTACCGGGGACAGTGGACTCTCAACAACAGCAGCGTG
CCATCCATGGTACTGATGAGCGTGTCGAGGCCGTTCGACGAGAGCGTCCTCGTCTGGCAC
CTCGCCACCGACTTCTGCTTCCACCTCCTCCAGGAGGACCCGTCCCCCTCCAGCGCCACC
GCCCGCCGTTGCAGGGAGATGTCCAACTACATGGCGTACCTCCTCTTCGTCAAGCCGGAG
ATGCTGATGCCCGGTGCCCGACGCAGCCTGTTCAGGGACACCTGCGGCGAGCTCGTGGGC
CTGCTCGGGGAGGACCGTCCTGGCGCGCCGCGGGCACGGGGAAAGAGAGGCCTCGCGCAC
AAGGTCGTCCAGCTGCTCAAGAGGGACGACGGCGGCGGCGTCCTGGGCTCAGCAGGCGTC
GGCGTCGTTCGCCGGGCTTGGTGCGTAGCCGAGGATCTCATGGACTCGCACAGGGGCAGC
GAGGAGAAGATGTGGGCCGTGATCCAGGGCGTGTGGGTGGAGATGCTCTGCTTCTCGGCC
AGCAGGTGCAAAGGCTACCTGCACGCCAAAGGCTTGGGAACGGGCGGGGAGTACCTGTCC
TACGTATGGCTCCTGCTCTTGTACATGGGGATGGAGACCTTGGCGGAGAAGATGCAGAGG
ACGGAGCTGTATGAGGGCCCCACTGCAGCAGCGTCGTCCATCAGTGGCCACAATGTTTGA

Peptide Sequence

PEP ID

Zm00001d052937_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:205501809:205504770:-1 gene:Zm00001d052937 transcript:Zm00001d052937_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:OSJNBb0045P24.5 protein
Sequence

MGDSTSTGFAAALELWQEHQLSILVVASLAIQWFLFVFAPLRQHRIPGLLRLSIWLAYLG
SDAVAIYALATLFNSHRCDTDTGRPGVELLWAPILLVHLGGQDSITAYNIEDNELWRRHV
VTAVSQVAAAIYVFVKAWPKSLVTTAHQAVNQATLDKVNAIQAHNEEMEAYGRIFTPALL
LFFCGITKCVFKPWDLKRVSVNSLVDSSSGSEEKGGESEMNSLQGYVGAATRYFESRGHG
RGAGLQEDDGDDDTCKAGEVWKPYNLCVDLAPPYSGRLSCLKHLARSPADEAHRLVKSSL
SATFHQLYTKESLKLHDISHFVFTNNAALNRWKVLTSARGLRTVAAATLLGAIAVFHYGG
GAADQVKADVTVTYALLWSAFVMEYVLPTVIHHTFGRVQRLFTGHRTWPDQVAQYNLMGY
VARRRKHSWLMEVVGWLGCRDLVDQLWTMDPCKGASSREITGLVHGHVAGGWMEGHIAGA
DSFRAFNDYRGQWTLNNSSVPSMVLMSVSRPFDESVLVWHLATDFCFHLLQEDPSPSSAT
ARRCREMSNYMAYLLFVKPEMLMPGARRSLFRDTCGELVGLLGEDRPGAPRARGKRGLAH
KVVQLLKRDDGGGVLGSAGVGVVRRAWCVAEDLMDSHRGSEEKMWAVIQGVWVEMLCFSA
SRCKGYLHAKGLGTGGEYLSYVWLLLLYMGMETLAEKMQRTELYEGPTAAASSISGHNV

Transcript Sequence

Transcript ID

Zm00001d052937_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:205501809:205504770:-1 gene:Zm00001d052937 gene_biotype:protein_coding transcript_biotype:protein_coding description:OSJNBb0045P24.5 protein
Sequence

GTTCATCAGCTACAGCTAGCCCTTGAGAGCTCTCTCTCTTTTTTTTTTTTGAGAGCAGAT
AGATGGGTGATTCCACTAGTACGGGCTTCGCGGCGGCCCTGGAGCTGTGGCAAGAACACC
AGCTGAGCATCCTCGTCGTCGCGAGCCTCGCCATCCAGTGGTTCCTCTTCGTCTTCGCCC
CGCTTCGACAGCATCGGATCCCAGGTCTGCTCAGGCTCTCCATCTGGCTGGCCTACCTGG
GCAGCGACGCCGTGGCCATCTACGCCCTCGCCACCCTCTTCAACTCCCACCGGTGCGACA
CCGACACCGGCCGCCCCGGCGTGGAGCTGCTGTGGGCGCCAATCCTGCTGGTGCACCTGG
GCGGCCAGGACAGCATCACGGCCTACAACATCGAAGACAACGAGCTATGGCGGCGGCATG
TCGTAACAGCGGTGTCTCAGGTCGCCGCTGCGATCTATGTGTTCGTCAAGGCGTGGCCGA
AATCCCTGGTGACTACTGCTCACCAAGCAGTTAACCAAGCCACCCTTGACAAGGTAAATG
CCATCCAGGCCCATAACGAAGAGATGGAGGCTTACGGGAGAATCTTCACACCAGCACTTC
TTCTGTTCTTCTGCGGGATCACCAAATGCGTGTTCAAGCCCTGGGACCTCAAGAGAGTCA
GCGTCAACAGCCTCGTCGACTCTTCATCGGGCTCGGAAGAGAAGGGCGGCGAGAGTGAGA
TGAATTCGCTTCAGGGGTACGTGGGAGCTGCGACACGGTATTTCGAGTCCCGCGGCCATG
GCAGAGGAGCAGGACTGCAGGAGGATGACGGCGACGACGACACTTGTAAAGCAGGGGAAG
TTTGGAAGCCCTACAACCTATGCGTGGACCTGGCGCCCCCTTACTCCGGCCGGCTGAGCT
GCCTGAAACACCTGGCGCGCAGCCCAGCGGACGAAGCCCATCGCCTGGTGAAATCCAGCC
TCTCCGCGACGTTCCACCAGCTCTACACCAAGGAATCGCTGAAGCTGCACGACATCTCGC
ATTTCGTCTTCACGAACAACGCCGCCTTGAACCGCTGGAAGGTGCTCACCTCGGCTCGAG
GGCTCCGGACGGTAGCCGCGGCCACGCTGCTCGGTGCGATCGCGGTGTTCCACTACGGCG
GCGGCGCCGCCGACCAGGTCAAGGCCGACGTCACCGTCACGTACGCGCTGCTGTGGTCTG
CGTTTGTGATGGAGTACGTCTTGCCCACCGTGATCCACCATACGTTCGGCAGGGTACAGC
GGCTGTTCACCGGGCACCGGACGTGGCCGGACCAGGTCGCGCAGTACAACCTCATGGGGT
ACGTGGCACGCAGAAGGAAGCACTCGTGGCTCATGGAGGTGGTAGGCTGGCTCGGCTGCA
GGGACCTGGTCGACCAGCTATGGACCATGGACCCGTGCAAGGGCGCTTCGTCCAGGGAGA
TCACCGGCCTTGTCCACGGCCACGTCGCCGGAGGGTGGATGGAGGGTCACATAGCCGGCG
CGGACTCGTTCCGGGCGTTCAACGACTACCGGGGACAGTGGACTCTCAACAACAGCAGCG
TGCCATCCATGGTACTGATGAGCGTGTCGAGGCCGTTCGACGAGAGCGTCCTCGTCTGGC
ACCTCGCCACCGACTTCTGCTTCCACCTCCTCCAGGAGGACCCGTCCCCCTCCAGCGCCA
CCGCCCGCCGTTGCAGGGAGATGTCCAACTACATGGCGTACCTCCTCTTCGTCAAGCCGG
AGATGCTGATGCCCGGTGCCCGACGCAGCCTGTTCAGGGACACCTGCGGCGAGCTCGTGG
GCCTGCTCGGGGAGGACCGTCCTGGCGCGCCGCGGGCACGGGGAAAGAGAGGCCTCGCGC
ACAAGGTCGTCCAGCTGCTCAAGAGGGACGACGGCGGCGGCGTCCTGGGCTCAGCAGGCG
TCGGCGTCGTTCGCCGGGCTTGGTGCGTAGCCGAGGATCTCATGGACTCGCACAGGGGCA
GCGAGGAGAAGATGTGGGCCGTGATCCAGGGCGTGTGGGTGGAGATGCTCTGCTTCTCGG
CCAGCAGGTGCAAAGGCTACCTGCACGCCAAAGGCTTGGGAACGGGCGGGGAGTACCTGT
CCTACGTATGGCTCCTGCTCTTGTACATGGGGATGGAGACCTTGGCGGAGAAGATGCAGA
GGACGGAGCTGTATGAGGGCCCCACTGCAGCAGCGTCGTCCATCAGTGGCCACAATGTTT
GATACCGCTCGGTCTAACTCTTTGGAAGGAGTCTAATCCTCTCAAGTTTAGATAAATTTT
AAGATAATAATGTTTATTGTTAGATATGTCTATAGATGGTCA