Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d052932_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:4:205269595:205274287:1 gene:Zm00001d052932 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotene isomerase1 description: carotene isomerase1
Sequence	ATGCCGCCGCTCGCCGCGCGCCTCCACGCCCCGCTTCTCCTCGTCCCCGCCGCCTCCCCT CGCCCCGCCACGCGTCTCTGCGCAGCGAGCGGGCCCCGCGGCGTCGGCGGTTTCAGGAGA GGCGCGTTGGCCTCGGAGAAGCCGCCGGTTGTGGCCGTCGCGGAGAAAGCGGGCGGCGAG GGTGGAGGAGGACAGGGCGAGGGTCCGTATGACGCGATTGTGATCGGGTCTGGGATCGGG GGCCTGGTGGCGGCGACGCAGCTCGCGGCCAAGGGTGCGCGGGTGCTGGTCCTCGAGAAG TACCTCATCCCCGGGGGAAGCTCTGGGTACTACCGCCGCGACGGGTTCACGTTCGACGTC GGCTCCTCTGTCATGTTCGGCTTCTCCGACAAGGGTAACTTGAATTTGATCACACAAGCA TTGGAAGCAGTTGGGCGTAAGATGGAAGTTCTACCTGACCCTTCTACAGTTCATTTCCAT CTACCTGGTGATCTCTCTGTCCTTGTGCATCGAAAGTATGAAGACTTCATCAATGAACTG ATCAGCAAATTCCCTCACGAGAAAGAAGGGATAATTAAGTTCTATGGCACATGCTGGAAG ATCTTCAATTCACTAAATTCGTTGGAGCTGAAGTCTCTAGAGGAGCCCCTTTATCTTTTT GGTCAATTTTTCCAGAAGCCTTTGGAATGCTTAACTCTAGCTTATTATTTGCCACAGAAT GCTGGGGATATTGCTCGCAAGTTCATAAAAGATCAGGAGCTACTCTCCTTCATAGATGCT GAGTGTTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCAAGCATG GTCTTGTGCGATAGGCACTTTGGGGGAATTAATTATCCAGTTGGTGGCGTTGGTGGTATC GCATTATCCCTGGCAGATGGCCTTGTTGAAAAGGGCAGCGAAATCCGTTACAAGGCGAAT GTAACCAATGTTGTTCTTGAAAATGGAAAGGCTGTTGGGGTGAGGTTGTCAAATGGGAAG GAGTTCTTTGCTAAAACGGTGATATCAAATGCCACTAGATGGGACACATTTGGAAAACTC TTGAAAGAAAAAGAACTTCCAGAAGAGGAGAAAAACTTTCAAAAGAATTATGTCAAGGCA CCATCATTCCTTTCAATTCATATGGGTGTCAAAGCATCAGTTCTTCCTGCTGGTACTGAC TGCCACCATTTTGTACTTGAGGATAATTGGAATAATTTGGAAAAACCCTATGGAAGCATA TTTTTAAGTATTCCTACAGTTCTTGATCCATCATTAGCTCCCGAAGGACACCATATACTT CATATATTTACTACTGCAGGCATAGAAGCCTGGGAGGGTATTTCTAGGAAGGAATATGAA GAGAAAAAAGAGATGGTGGCCAACGAGATTATAAGAAGGCTTGAAAAGAAGTTGTTTCCT GGTCTTCAAGATTCAATAGTCCTCAAAGAGGTAGGCTCACCAAAGACTCACCGGAGATTT CTTGCTCGAAATGATGGTACATATGGACCAATGCCGCGGGGTAAACCCAAGGGCTTACTT GCTATGCCTTTCAATACTACTTCAATAGATGGCCTTTACTGTGTTGGTGACAGCTGTTTT CCCGGACAAGGTGTAATAGCTGTAGCATTCTCAGGGATCATGTGCGCTCACCGAGTCGCT GCAGATATTGGACTAGAGCAAAAATCTCCGGCTCTAGATGCTGGTCTTCTTGGGCTACTC AGATGGTTGAGAACACTTGCATAG

Peptide Sequence

PEP ID	Zm00001d052932_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:4:205269595:205274287:1 gene:Zm00001d052932 transcript:Zm00001d052932_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotene isomerase1 description: carotene isomerase1
Sequence	MPPLAARLHAPLLLVPAASPRPATRLCAASGPRGVGGFRRGALASEKPPVVAVAEKAGGE GGGGQGEGPYDAIVIGSGIGGLVAATQLAAKGARVLVLEKYLIPGGSSGYYRRDGFTFDV GSSVMFGFSDKGNLNLITQALEAVGRKMEVLPDPSTVHFHLPGDLSVLVHRKYEDFINEL ISKFPHEKEGIIKFYGTCWKIFNSLNSLELKSLEEPLYLFGQFFQKPLECLTLAYYLPQN AGDIARKFIKDQELLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVGGVGGI ALSLADGLVEKGSEIRYKANVTNVVLENGKAVGVRLSNGKEFFAKTVISNATRWDTFGKL LKEKELPEEEKNFQKNYVKAPSFLSIHMGVKASVLPAGTDCHHFVLEDNWNNLEKPYGSI FLSIPTVLDPSLAPEGHHILHIFTTAGIEAWEGISRKEYEEKKEMVANEIIRRLEKKLFP GLQDSIVLKEVGSPKTHRRFLARNDGTYGPMPRGKPKGLLAMPFNTTSIDGLYCVGDSCF PGQGVIAVAFSGIMCAHRVAADIGLEQKSPALDAGLLGLLRWLRTLA

Transcript Sequence

Transcript ID	Zm00001d052932_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:205269595:205274287:1 gene:Zm00001d052932 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotene isomerase1 description: carotene isomerase1
Sequence	ACCAGCGTCTGTCCGGAGTCCGGACTCCGGACCCGCTCCTCATCCTCAGCGGCTCAGCCG TCCTTGGCTCGCCACTGGCTTCCGTTCCCCGCCTTCGTCTCCTCCCGCCCGGGAATCCTC CGGCCTCCCGCCCACCCAGATTCCCCCCACCACCGCCAAGCCGCCAGCGCACGAGACGAC CCCCGACCTCGTCCCACTAAAACCCACACGCACGGACACGCCCCACTCCACTCGCTCCCA CCGCCCGCGCACAATCCAAACGCAACCGTCCCGTCCTCGGGGCCGCCATGCCGCCGCTCG CCGCGCGCCTCCACGCCCCGCTTCTCCTCGTCCCCGCCGCCTCCCCTCGCCCCGCCACGC GTCTCTGCGCAGCGAGCGGGCCCCGCGGCGTCGGCGGTTTCAGGAGAGGCGCGTTGGCCT CGGAGAAGCCGCCGGTTGTGGCCGTCGCGGAGAAAGCGGGCGGCGAGGGTGGAGGAGGAC AGGGCGAGGGTCCGTATGACGCGATTGTGATCGGGTCTGGGATCGGGGGCCTGGTGGCGG CGACGCAGCTCGCGGCCAAGGGTGCGCGGGTGCTGGTCCTCGAGAAGTACCTCATCCCCG GGGGAAGCTCTGGGTACTACCGCCGCGACGGGTTCACGTTCGACGTCGGCTCCTCTGTCA TGTTCGGCTTCTCCGACAAGGGTAACTTGAATTTGATCACACAAGCATTGGAAGCAGTTG GGCGTAAGATGGAAGTTCTACCTGACCCTTCTACAGTTCATTTCCATCTACCTGGTGATC TCTCTGTCCTTGTGCATCGAAAGTATGAAGACTTCATCAATGAACTGATCAGCAAATTCC CTCACGAGAAAGAAGGGATAATTAAGTTCTATGGCACATGCTGGAAGATCTTCAATTCAC TAAATTCGTTGGAGCTGAAGTCTCTAGAGGAGCCCCTTTATCTTTTTGGTCAATTTTTCC AGAAGCCTTTGGAATGCTTAACTCTAGCTTATTATTTGCCACAGAATGCTGGGGATATTG CTCGCAAGTTCATAAAAGATCAGGAGCTACTCTCCTTCATAGATGCTGAGTGTTTTATTG TGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCAAGCATGGTCTTGTGCGATA GGCACTTTGGGGGAATTAATTATCCAGTTGGTGGCGTTGGTGGTATCGCATTATCCCTGG CAGATGGCCTTGTTGAAAAGGGCAGCGAAATCCGTTACAAGGCGAATGTAACCAATGTTG TTCTTGAAAATGGAAAGGCTGTTGGGGTGAGGTTGTCAAATGGGAAGGAGTTCTTTGCTA AAACGGTGATATCAAATGCCACTAGATGGGACACATTTGGAAAACTCTTGAAAGAAAAAG AACTTCCAGAAGAGGAGAAAAACTTTCAAAAGAATTATGTCAAGGCACCATCATTCCTTT CAATTCATATGGGTGTCAAAGCATCAGTTCTTCCTGCTGGTACTGACTGCCACCATTTTG TACTTGAGGATAATTGGAATAATTTGGAAAAACCCTATGGAAGCATATTTTTAAGTATTC CTACAGTTCTTGATCCATCATTAGCTCCCGAAGGACACCATATACTTCATATATTTACTA CTGCAGGCATAGAAGCCTGGGAGGGTATTTCTAGGAAGGAATATGAAGAGAAAAAAGAGA TGGTGGCCAACGAGATTATAAGAAGGCTTGAAAAGAAGTTGTTTCCTGGTCTTCAAGATT CAATAGTCCTCAAAGAGGTAGGCTCACCAAAGACTCACCGGAGATTTCTTGCTCGAAATG ATGGTACATATGGACCAATGCCGCGGGGTAAACCCAAGGGCTTACTTGCTATGCCTTTCA ATACTACTTCAATAGATGGCCTTTACTGTGTTGGTGACAGCTGTTTTCCCGGACAAGGTG TAATAGCTGTAGCATTCTCAGGGATCATGTGCGCTCACCGAGTCGCTGCAGATATTGGAC TAGAGCAAAAATCTCCGGCTCTAGATGCTGGTCTTCTTGGGCTACTCAGATGGTTGAGAA CACTTGCATAGAACGATATCAGACAGTTGAAAATGGACTTCATTTTTCCCCCCGGAAGGC TGATGTTTCACCAGAGTTAGGATTCTGCACGATCTGTTATGATGATCTTGTTATCTGTAC CATCTCAGCATCGATTTCTTGAAACTCCTAACGGAAAAAAAAAGGAATACGAATGGGTGT ACAGGTTTCAGATTTTGAATTATATGATTACGGTGTCAGGGCCATGGCATATTGGTATGC ATATAAAGACTACATCATAGAGTAACCAGATGGTGTACATCATCTGATTACCGCAATAAG CAGAGCACTACATTTGGGAGCAATGTAAATCATGTTACCTAGGATTTTGAAAGTTCTGTT TTGAGATACCCTTCAACTTTCTGAATATGCATAAGCTTCATTGTTCGT