Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d052809_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:4:201661976:201666670:-1 gene:Zm00001d052809 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heat shock protein 90-5 chloroplastic
Sequence	ATGGCTCCGGCGCTGAGCGGGACTCTGGGCGCGTCGTCGGTGGCGGCGCTGCGGCCCTGC GCGGGGAGGAGGGCGCCGTCCGCCGCGAGCTCGGTTGCGCCGCGCGGGAGCGGGGTGGTG AGGTGCTCCAGAGGGCTCAGGTGGGACGCCCACAGAAGCAGGGGGAGGTTGCTCAGGGTG AGGTGCGATGCGGCCGTCGTGGAGAAGCCCGCCGGGGAGGAGGCGGCTGGGGAGAAGTTC GAGTACCAGGCGGAGGTGAGCCGCTTAATGGACTTGATCGTCCATAGTCTGTACAGTCAT AAGGAGGTATTTCTCCGGGAGCTTGTTAGCAATGCGAGTGATGCGCTGGATAAGCTGAGG TTCCTCGGCGTCACTGATTCTTCTTTGCTTGCTGATGGCGGCGAGCTAGAAATAAGAATT AAGCCTGACCTTGATGCTGGAACGATTACTATCACTGACACTGGTGTTGGTATGACTAAA GATGAGCTCAAGGACTGCCTTGGTACCATTGCTCAGAGTGGTACCTCAAAATTTCTGAAG GCCCTCAAGGAAAACAAAGACCTTGGGGCGGACAATGGTCTAATTGGTCAGTTTGGTGTT GGATTTTACTCAGCTTTTCTTGTTGCAGAGAAGGTTGTGGTGTCCACCAAGAGCCCAAAA TCAGATAAACAGTATGTGTGGGAAGCTGTGGCTGACAGTAGCTCTTATGTCATAAAGGAA GAGACTGATCCTGAGAAAATGCTTACACGTGGAACTCAGATTACCCTGTTTCTAAGACCT GATGATAAGTACGAGTTTGCGGACCCTTCAAGGATTCAAGGCTTAGTAAAAAATTACTCT CAGTTTGTGTCTTTCCCCATATACACATGGCAGGAGAAATCAAGAACTGTTGAGGTTGAA GAGGATGAAGAGCCGAAAGAAGTTGAAGAGGCAACAAAGGGTGAGAAAAAGAAGAAGACT ATTACAGAGAAATATTGGGATTGGGAACTAGCCAATGAGACAAAACCCATATGGATGAGA AATCCAAAGGAAATTGAGAACACCGAATACAATGAGTTCTATAAGAAGACATTCAATGAG TTTTTGGACCCTCTTGCTCACACTCACTTCACAACTGAGGGTGAGGTGGAATTCAGGAGT GTTCTTTATGTTCCGGGCATGGCGCCTCTTAGTAATGAGGAGATAATGAACCCCAAGACC AAAAATATCCGGCTATATGTTAAAAGAGTATTCATCTCTGATGACTTTGATGGTGAACTG TTTCCAAGATACTTGAGCTTTGTGAAAGGTGTGGTGGATTCAAATGACCTTCCCCTCAAC GTTTCTCGGGAGATTCTTCAAGAAAGTCGAATTGTAAGAATTATGCGCAAGCGACTTGTC AGAAAGACCTTTGATATGATTGAAGAGATTGCGGAAAAGGAAGATAAGGAGGACTATAAG AAGTTTTGGGAGAGCTTTGGCAAGTTTATCAAGCTTGGTTGCATCGAGGACACAGGGAAT CACAAGCGCCTTGCTCCATTGTTGCGCTTCCACTCTTCTAAAAACGAGGGAGATTTGATA AGTCTTGATCAATATGTAGAGAGCATGCCTGAAAGTCAAAAGGCAATCTACTACATCGCT ACAGATAGTCTCCAGAGTGCAAAGACTGCTCCTTTCCTGGAAAAGCTGGTCCAGAAAGAT ATTGAAGTTCTCTACCTTATTGAGCCGATAGATGAGGTTGCCATTCAGAACTTGCAGACC TACAAAGAGAAGAAATTTGTGGATATCAGCAAAGAGGATCTGGAATTGGGTGATGAAGAA GAAGAGACTAAAGAAACCAAACAGGAGTTCACTCTCCTATGTGATTGGGTTAAACAACAG CTTGGCGACAAGGTTGCGAAGGTCCAAATATCAAAGCGTTTAAGTTCATCTCCATGTGTT CTCGTATCTGGCAAGTTCGGTTGGTCCGCCAATATGGAAAGGCTCATGAAGGCTCAAACA CTTGGTGACACATCAAGTTTGGAATTCATGAGGGGAAGAAGGATCTTCGAAATCAACCCT GACCACCCAATTATCAAGGATTTGAGCGCTGCTTGCAAAAATGAGCCCGAAAGCACAGAA GCCAGGAGGGCTGTTGAGCTCCTATACGAGGCTGCTTTAATCTCGAGTGGATATACTCCG GAGAGTCCAGCGGAGTTGGGTGGCAAGATCTATGAGATGATGGCGATTGCCCTCGGCGGG AGATGGGGAAGGTCCGACATGGAGGAGGCCGAAGCGTCGACGGGTGAGGCCAGCGCAGAG GCAGACTCATCTGAAGGCACCGTAGCAGAGGTGATTGAGCCCTCGGAAGTTAGACCCGAG AGCGATCCGTGGAGGGACCAGTGA

Peptide Sequence

PEP ID	Zm00001d052809_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:4:201661976:201666670:-1 gene:Zm00001d052809 transcript:Zm00001d052809_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heat shock protein 90-5 chloroplastic
Sequence	MAPALSGTLGASSVAALRPCAGRRAPSAASSVAPRGSGVVRCSRGLRWDAHRSRGRLLRV RCDAAVVEKPAGEEAAGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLR FLGVTDSSLLADGGELEIRIKPDLDAGTITITDTGVGMTKDELKDCLGTIAQSGTSKFLK ALKENKDLGADNGLIGQFGVGFYSAFLVAEKVVVSTKSPKSDKQYVWEAVADSSSYVIKE ETDPEKMLTRGTQITLFLRPDDKYEFADPSRIQGLVKNYSQFVSFPIYTWQEKSRTVEVE EDEEPKEVEEATKGEKKKKTITEKYWDWELANETKPIWMRNPKEIENTEYNEFYKKTFNE FLDPLAHTHFTTEGEVEFRSVLYVPGMAPLSNEEIMNPKTKNIRLYVKRVFISDDFDGEL FPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKTFDMIEEIAEKEDKEDYK KFWESFGKFIKLGCIEDTGNHKRLAPLLRFHSSKNEGDLISLDQYVESMPESQKAIYYIA TDSLQSAKTAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTYKEKKFVDISKEDLELGDEE EETKETKQEFTLLCDWVKQQLGDKVAKVQISKRLSSSPCVLVSGKFGWSANMERLMKAQT LGDTSSLEFMRGRRIFEINPDHPIIKDLSAACKNEPESTEARRAVELLYEAALISSGYTP ESPAELGGKIYEMMAIALGGRWGRSDMEEAEASTGEASAEADSSEGTVAEVIEPSEVRPE SDPWRDQ

Transcript Sequence

Transcript ID	Zm00001d052809_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:201661976:201666670:-1 gene:Zm00001d052809 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heat shock protein 90-5 chloroplastic
Sequence	AATCACAGACTCACAGTGACTCAGTGACAGTAGTGTTCGGGCCCGATCGACTGCTCCTAG AAGCTTCGGCCGCGCCTCTATCTCATCTCCTTCCTCCTGTTGAGCCCGCCGGCCTCCCAC AGCTTACTACGAAAACCCTAACCCCTTCCCTTATCCTCTGCTCCCTCTCCACGTTTCCAC GAACGTTGGCGCGCAAGCTCGTGGTGTGAGCGGTCACTGTCTCCCATCCCATGGCTCCGG CGCTGAGCGGGACTCTGGGCGCGTCGTCGGTGGCGGCGCTGCGGCCCTGCGCGGGGAGGA GGGCGCCGTCCGCCGCGAGCTCGGTTGCGCCGCGCGGGAGCGGGGTGGTGAGGTGCTCCA GAGGGCTCAGGTGGGACGCCCACAGAAGCAGGGGGAGGTTGCTCAGGGTGAGGTGCGATG CGGCCGTCGTGGAGAAGCCCGCCGGGGAGGAGGCGGCTGGGGAGAAGTTCGAGTACCAGG CGGAGGTGAGCCGCTTAATGGACTTGATCGTCCATAGTCTGTACAGTCATAAGGAGGTAT TTCTCCGGGAGCTTGTTAGCAATGCGAGTGATGCGCTGGATAAGCTGAGGTTCCTCGGCG TCACTGATTCTTCTTTGCTTGCTGATGGCGGCGAGCTAGAAATAAGAATTAAGCCTGACC TTGATGCTGGAACGATTACTATCACTGACACTGGTGTTGGTATGACTAAAGATGAGCTCA AGGACTGCCTTGGTACCATTGCTCAGAGTGGTACCTCAAAATTTCTGAAGGCCCTCAAGG AAAACAAAGACCTTGGGGCGGACAATGGTCTAATTGGTCAGTTTGGTGTTGGATTTTACT CAGCTTTTCTTGTTGCAGAGAAGGTTGTGGTGTCCACCAAGAGCCCAAAATCAGATAAAC AGTATGTGTGGGAAGCTGTGGCTGACAGTAGCTCTTATGTCATAAAGGAAGAGACTGATC CTGAGAAAATGCTTACACGTGGAACTCAGATTACCCTGTTTCTAAGACCTGATGATAAGT ACGAGTTTGCGGACCCTTCAAGGATTCAAGGCTTAGTAAAAAATTACTCTCAGTTTGTGT CTTTCCCCATATACACATGGCAGGAGAAATCAAGAACTGTTGAGGTTGAAGAGGATGAAG AGCCGAAAGAAGTTGAAGAGGCAACAAAGGGTGAGAAAAAGAAGAAGACTATTACAGAGA AATATTGGGATTGGGAACTAGCCAATGAGACAAAACCCATATGGATGAGAAATCCAAAGG AAATTGAGAACACCGAATACAATGAGTTCTATAAGAAGACATTCAATGAGTTTTTGGACC CTCTTGCTCACACTCACTTCACAACTGAGGGTGAGGTGGAATTCAGGAGTGTTCTTTATG TTCCGGGCATGGCGCCTCTTAGTAATGAGGAGATAATGAACCCCAAGACCAAAAATATCC GGCTATATGTTAAAAGAGTATTCATCTCTGATGACTTTGATGGTGAACTGTTTCCAAGAT ACTTGAGCTTTGTGAAAGGTGTGGTGGATTCAAATGACCTTCCCCTCAACGTTTCTCGGG AGATTCTTCAAGAAAGTCGAATTGTAAGAATTATGCGCAAGCGACTTGTCAGAAAGACCT TTGATATGATTGAAGAGATTGCGGAAAAGGAAGATAAGGAGGACTATAAGAAGTTTTGGG AGAGCTTTGGCAAGTTTATCAAGCTTGGTTGCATCGAGGACACAGGGAATCACAAGCGCC TTGCTCCATTGTTGCGCTTCCACTCTTCTAAAAACGAGGGAGATTTGATAAGTCTTGATC AATATGTAGAGAGCATGCCTGAAAGTCAAAAGGCAATCTACTACATCGCTACAGATAGTC TCCAGAGTGCAAAGACTGCTCCTTTCCTGGAAAAGCTGGTCCAGAAAGATATTGAAGTTC TCTACCTTATTGAGCCGATAGATGAGGTTGCCATTCAGAACTTGCAGACCTACAAAGAGA AGAAATTTGTGGATATCAGCAAAGAGGATCTGGAATTGGGTGATGAAGAAGAAGAGACTA AAGAAACCAAACAGGAGTTCACTCTCCTATGTGATTGGGTTAAACAACAGCTTGGCGACA AGGTTGCGAAGGTCCAAATATCAAAGCGTTTAAGTTCATCTCCATGTGTTCTCGTATCTG GCAAGTTCGGTTGGTCCGCCAATATGGAAAGGCTCATGAAGGCTCAAACACTTGGTGACA CATCAAGTTTGGAATTCATGAGGGGAAGAAGGATCTTCGAAATCAACCCTGACCACCCAA TTATCAAGGATTTGAGCGCTGCTTGCAAAAATGAGCCCGAAAGCACAGAAGCCAGGAGGG CTGTTGAGCTCCTATACGAGGCTGCTTTAATCTCGAGTGGATATACTCCGGAGAGTCCAG CGGAGTTGGGTGGCAAGATCTATGAGATGATGGCGATTGCCCTCGGCGGGAGATGGGGAA GGTCCGACATGGAGGAGGCCGAAGCGTCGACGGGTGAGGCCAGCGCAGAGGCAGACTCAT CTGAAGGCACCGTAGCAGAGGTGATTGAGCCCTCGGAAGTTAGACCCGAGAGCGATCCGT GGAGGGACCAGTGAGTTCTCCCACGGGCATCCTTTGTTAGAACTCCATATTTAGCAGTGC CGGGGAAAAAAACTAAGCCATGGGCAAGAACATATTTGGTCACAGTTGCTTCTATATGGG TTCTTGCCGTGGCAATTTTTTGTAGGCTTAGACTTTGCCGGCCACTAAAATCTTATTGAG GAGGTAGTGGCCTTAGAAAAGAATAATAAAGCATGAAGACTGATGATTACATAGCAAAAT TGTGCTGTCCCTCTCAATAATATTTATAATGAAAAGAACTTATTTCT