Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052748_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:4:199642653:199648476:1 gene:Zm00001d052748 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plasma-membrane choline transporter family protein
Sequence

ATGGTATTGGGGGGAGGCCCTCTAGGCGCCATCATTGGCCGCTACCCCTCCTCCTCCGCC
GCCGCCGGTGACGATGAACAAGGGGACCCGGGACCCGGAGGAGGCGTCATTCGCCATGAC
CGCAAGTGCCGGGACTGGCCCTTCCTCGTCCTCTTCGCCGCCTTCTGGGTTGCCATGATT
GTCAACTCCAGCTTCGGATTCAACCAGGGCAACCCACTCAGGCTGACATACGGACTGGAC
TACAAAGGGAACATATGTGGCAGCAGGCATGCCGATCCTGATTTGTATCAGTTAGATGTT
CGCTATTGGGTGAACCCCAACCAGGTCTACCAAAGTGGCCTCAAAACCAGTCACATCGAG
CTACCTGATGCTAAAACCATCTGCCTGATGGAATGCCCACTTCCTGCCGAAGATGGCTTG
AATTTTGTTTGTGATTATCCAGAAGGTGACATACGCCTCTCTGTCGACGACTGGATTGAC
AGGGACTACGATTACTTCGAGTACCTCACACCAGACATGAGGAATAGTTCTCTTCAGCTG
CAGGGTCCATGTTACCCTGTCATATTTCCAAGTGTAAATGTCTACTGGAGCTGCCAGTTT
ATTGCACGGGCATCCAATGCCTCTTTAAAGCATTGGAAGGACATGGGTGGTGTCACCATC
GACGAAAACATGCTAATAGACAGAACAATTCATGATGCAATTAATAGCAAATCTGCCGTC
ATGAAGAGATATGTTGCAGATATTGGGAAGTCCTGGCCTGTGTTAATCCTTTGTGGGGGA
TTACTCCCTTTGTTCCTATCTATGATCTGGTTACTCATGATTCGCTTTTTTGTTGCTGGG
ATGTCTTGGATAACAGTGGTGGTCTTCAATGCTCTTGTGGTATCTGTTACAATGTTCTTC
TATATAAAAGCTGGTTGGATTGGCCATGATCCTTTGACTGTTGTAATTGGTGAAAGTGAT
CCTTACGTTAGCATAGGTGGACGAGAGATAAATCACCTTCATGCTGCTTCCGTCTTGATG
ACAGTGATAATGATACTTGCTTTCCTGACTTCAATAGCTATCGCTCGGCGCATTATGAAA
GCAACATCAGTCCTAAAGTAG

Peptide Sequence

PEP ID

Zm00001d052748_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:4:199642653:199648476:1 gene:Zm00001d052748 transcript:Zm00001d052748_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plasma-membrane choline transporter family protein
Sequence

MVLGGGPLGAIIGRYPSSSAAAGDDEQGDPGPGGGVIRHDRKCRDWPFLVLFAAFWVAMI
VNSSFGFNQGNPLRLTYGLDYKGNICGSRHADPDLYQLDVRYWVNPNQVYQSGLKTSHIE
LPDAKTICLMECPLPAEDGLNFVCDYPEGDIRLSVDDWIDRDYDYFEYLTPDMRNSSLQL
QGPCYPVIFPSVNVYWSCQFIARASNASLKHWKDMGGVTIDENMLIDRTIHDAINSKSAV
MKRYVADIGKSWPVLILCGGLLPLFLSMIWLLMIRFFVAGMSWITVVVFNALVVSVTMFF
YIKAGWIGHDPLTVVIGESDPYVSIGGREINHLHAASVLMTVIMILAFLTSIAIARRIMK
ATSVLK

Transcript Sequence

Transcript ID

Zm00001d052748_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:199642653:199648476:1 gene:Zm00001d052748 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plasma-membrane choline transporter family protein
Sequence

GAGCCACCAAAGAGGCCAAGAGCTTAGCTTTTACCTAAAGCAGCTGAGGTACCTCACCAT
CACCACCACCGACACCAACTGCGCCGAGGCCGGAGGCGGAGTAGAGCCAGACCAGAATGG
TATTGGGGGGAGGCCCTCTAGGCGCCATCATTGGCCGCTACCCCTCCTCCTCCGCCGCCG
CCGGTGACGATGAACAAGGGGACCCGGGACCCGGAGGAGGCGTCATTCGCCATGACCGCA
AGTGCCGGGACTGGCCCTTCCTCGTCCTCTTCGCCGCCTTCTGGGTTGCCATGATTGTCA
ACTCCAGCTTCGGATTCAACCAGGGCAACCCACTCAGGCTGACATACGGACTGGACTACA
AAGGGAACATATGTGGCAGCAGGCATGCCGATCCTGATTTGTATCAGTTAGATGTTCGCT
ATTGGGTGAACCCCAACCAGGTCTACCAAAGTGGCCTCAAAACCAGTCACATCGAGCTAC
CTGATGCTAAAACCATCTGCCTGATGGAATGCCCACTTCCTGCCGAAGATGGCTTGAATT
TTGTTTGTGATTATCCAGAAGGTGACATACGCCTCTCTGTCGACGACTGGATTGACAGGG
ACTACGATTACTTCGAGTACCTCACACCAGACATGAGGAATAGTTCTCTTCAGCTGCAGG
GTCCATGTTACCCTGTCATATTTCCAAGTGTAAATGTCTACTGGAGCTGCCAGTTTATTG
CACGGGCATCCAATGCCTCTTTAAAGCATTGGAAGGACATGGGTGGTGTCACCATCGACG
AAAACATGCTAATAGACAGAACAATTCATGATGCAATTAATAGCAAATCTGCCGTCATGA
AGAGATATGTTGCAGATATTGGGAAGTCCTGGCCTGTGTTAATCCTTTGTGGGGGATTAC
TCCCTTTGTTCCTATCTATGATCTGGTTACTCATGATTCGCTTTTTTGTTGCTGGGATGT
CTTGGATAACAGTGGTGGTCTTCAATGCTCTTGTGGTATCTGTTACAATGTTCTTCTATA
TAAAAGCTGGTTGGATTGGCCATGATCCTTTGACTGTTGTAATTGGTGAAAGTGATCCTT
ACGTTAGCATAGGTGGACGAGAGATAAATCACCTTCATGCTGCTTCCGTCTTGATGACAG
TGATAATGATACTTGCTTTCCTGACTTCAATAGCTATCGCTCGGCGCATTATGAAAGCAA
CATCAGTCCTAAAGTAGGTTGCTGCAAAGGTCGTTGGCGAAGTGCAGGCACTTATTATTT
TTCCAGTCGTGCCATACTTGATCCTCGCTATCTTTTACACTTTCTGGTTTTCAGCAGCAC
TTCATCTTTTCAGCGCCGGTCAAGTTATACAAAATGATTGCAATACAGATTGCTGTTCCT
ACGATCTGAAACTTGGCAAAGTAAATTGTGACAGATGTTGTGGCTACACTATCCATTACA
CCCCACATATTGGCATCGCCATTCTTTTCCATCTTTTTGGCTGTTACTGGGCAACACAGT
TTTTCATCGGGTGTTCTTCGACTATAATTGCCGGATCGGTTGCTTCATACTACTGGGCAC
GCGGTGAAATATCGCACGATATCCCTTTCCATACCGTGGTATCTTCCCTGAAGCGCTTGT
TGCGCTATAGCCTGGGATCTGTGGCTCTGGGCTCACTGATAGTGTCCATCGTAGAGTGGG
TGCGATTCATACTAGAATCACTACGCCGCAGGCTGAAATTTGTTGACTCTGCCCGCGGAA
GCCGGTTCGGGAAGACGGTATCATCCTCATCCCAGTGCTGCTTAGGCTGCATCGATTGGA
CCCTGAAATCGGTGAATCGAAATGCCTATGTCATGATTGCCATCACAGGGAAAGGATTCT
GCAAGGCTTCCGTGCTAGCGACTGGGCTGATCATGAACAACGTGTTGCGCGTCGGGAAGG
TGAATGTCATTGGGGATGTGATCCTCCTGTTGGGCAAACTTTGTGTTAGCCTGTTGTGTG
CGCTGTTTGCCTTCCTTATGCTGGACGAGCACAAGTACAGATCTGGGCATAACAAGATCT
CATCACCGCTGGTCCCCGTGCTGCTGTCGTGGGCGCTGGGCTATATAGTTGCGAAGCTTT
TCTTCGCAGTGGTGGAGGTGTCGATCGACACAATGGTCCTGTCATTCTGCCAGGACTCGG
AAGAGCATCAGGGGAACGCGCGGTATGCTCCCCCGCTGCTGATGGAGACATTGGACGAGG
AGAGCGAGTTGCGAAGGCTGACACAGGGGCCATGATCGATCTTCCAAATAGGAGACACTG
AACTGAATGGCTGTGATGTTGGTTGCATGTCTTTTTTATATGAATCATCACTGGGGTTGA
TGGATGGAGCTATAGGTGCAAGCATGTCTTTTTATATGTATCAGCTAAATACGAGGAATA
GAATAGAATAGGGCTTAGTGCTGGAATTGAAACCCACCGTCTGTAATGTATGTTCGGCTT
TATTTGATATGTCTTTTTTGTTTATATATTGTTAGACTATGTGTGTGGACCGACACCACT
GTTGGGCTGCCGACCCATTAGGGTTAGGGTTGTGAGTCTATATATTGCACTCTATCTTAT
ATCAATACATCAACCAATTTAG