Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052723_T020
CDS Infomation

cds chromosome:B73_RefGen_v4:4:198876902:198882338:-1 gene:Zm00001d052723 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGAGCCCGCGGGGGCGCGCAAGGAGTGGCGCGCCGTCCCCGACTCCTCGCTCCGCTCC
AATGGCGCCGAGGATGCCGCGGAGCATGGGAAGCTGGGGCAGTCGGAGGAACGAGCTATC
TACGAGGAAGGGGCGGGTGGACTGGGCGACTTCTGTACCATCACTATTGATGGGAGCGGA
GGGCTCAGCGAGGACATCCTGCAGCAGCGCCTGCAAAGTGTCGCACGGCAGCGGGAGGAG
CTGCAGCAAGTCGAGATCGAGTTGCGTGCGCAGGCCATTGCACACCCGCAGATCATCGAG
GCGCAACAAAGCTTCCAGGCTGCTGCCAAGGAGCATGCTGCAGCTGTGGCAAAGATCAAG
GAGCAATTGCATGAGCGGGAGCAGTACATTCTTGAATTAGAAATGAAACTCAATGACAAG
GATAGAGAACTAAATGCTCTGAAGATTGATCATCAAACGGTGTGGGCAAATCAAGATCTT
CTCAGAGAACAGACCAAAGAGCTGGCAAGTGTCAGAAGGGAACGTGACAACTCTGAAGCT
GAAAGAGCCCAACATCTTAAACAAATCCACGATCTCCAGGAACTTTTGCGAGAAAAAGAA
AGCCAGTTCATTGCAATAGAGGAACAGCATAGGGCTGCTCAAGAGAACATTCTTTACAAA
GATGAGCAGTTGAGGGAAGCCCATGCTTGGGTTTCTCAAGTTCGAGAAATGGATGCATTG
CAGTCTCAGTCCCTACAAGTTGAGTTACGTGAGCGCATGGAGCAATTTAATCAATATTGG
ATTAGTTCTCAACAACAGTATGCTGAAATGCAGCGGAGCCTTCTCCATACAATACAACAA
CTCCAGCAAGAATTAGCTGAGGCAAGGGAACGGTCTGGTGCACAAAAGGATGGCCCACAT
GTTTCTAGGGAGGGATCAGCTGAATCATCACTTGTTCAAAGCATAGCGAACAGCGTGACT
TCAAATGGTAGTGCAACTGCAGATGGGAGCCAGCAACTGTTGAAAAACAATGGAAGTGTG
GATGTCTCTCTTAAGGGCAATAATGCCTCAGCTGTACCTGTTCCATCTTTATTGGGAATA
GGTGGTCCGGCTGCGCATATTGCTGCAATGCATTCTTTTATGATTCATCCTCAAGGCATT
CCTCAACCTTTAGCATCACCCAACTCTGGCATTCCTCAGTTTGGCAGTTTTCAGACACAG
CCTATGATTCAACCAAACTCACATTGGCCAAATCAGCAGGAAGTACAAATTGTCTCACAA
CCACAAGATGAAACAAACTATCAGACATCCCAATCAGGTCAGACTGCATTGCAACAAGAC
ACTATTAATACTGATGAGCTGTCCCCCAAGGCAAGTGAGGGTGGCCATCCAGACCATCTT
AATGCCCAGGGGAAACAACAGCAGAGCCCTGCAAGTGCACCTACTGAATCAACTCATGAA
CTTACTGTTGTTGAAACAAACATAGCTGAACATGTACCTTATGATGAACAACAAAAAACC
TTAAAAGAACAGGATTCACTATCAAATATAAAAAGCCATGTTGGAAGAGTTGAGCCTCAA
GAGCAAAATGCTGAATCCAAGGTTGAAAGAGCTGCATCTGACAAGCAATCTGAACCTCAA
TCTAGACAGCATAAACCTTCAAACTTCCCTCCAACTACCCAGCTTAACTTGAAAAACAGT
GCAACAGAGAATCCTAATGTTGTAAATCAGGTTGATACAATGAAATCAGTTACAGGTGGT
TTTGGTTCACAGTTACCTCGTGTACCTAAGGAACCTGCTCTCCTAGATGAGAGATCTCTA
TTGGCTTGTATTGTACGTGCAGTTCCTGCTGGACCTGAGGGTGGAATCAGGATTAGCTCA
ACTCTGCCAAATAGGCTTGGGAAAATGTTGGCTCCTCTTCACTGGCATGATTATAAGAAG
CAATATGGGAAGCTTGATGATTTTGTGGCTAGTCGTCCAGAGCTGTTTGTGATTGAGGGA
GACTTCATTCACCTTCGTGAAGGAGCACAGCAGATCATTTCTGCTACTACAGCTGCTGCA
AAAATAGCTGCTGCTACAGCATCTTCTGCCCCTTACTCATCCTTACTGCCTTCTGTTGCT
GTTACTCCTGTGGCACAAAGCACTCGGCAAAAGAGGGGCCCTGCAGTTGATTCCAGATCA
TCAAATGCAATTCTTTCTGGAAATGGCTTCACAGATCAATTTAACATCATTCAGGGGGTT
AGTGACGTACCTGTTTCA

Peptide Sequence

PEP ID

Zm00001d052723_P020
PEP Infomation

pep chromosome:B73_RefGen_v4:4:198876902:198882338:-1 gene:Zm00001d052723 transcript:Zm00001d052723_T020 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MEPAGARKEWRAVPDSSLRSNGAEDAAEHGKLGQSEERAIYEEGAGGLGDFCTITIDGSG
GLSEDILQQRLQSVARQREELQQVEIELRAQAIAHPQIIEAQQSFQAAAKEHAAAVAKIK
EQLHEREQYILELEMKLNDKDRELNALKIDHQTVWANQDLLREQTKELASVRRERDNSEA
ERAQHLKQIHDLQELLREKESQFIAIEEQHRAAQENILYKDEQLREAHAWVSQVREMDAL
QSQSLQVELRERMEQFNQYWISSQQQYAEMQRSLLHTIQQLQQELAEARERSGAQKDGPH
VSREGSAESSLVQSIANSVTSNGSATADGSQQLLKNNGSVDVSLKGNNASAVPVPSLLGI
GGPAAHIAAMHSFMIHPQGIPQPLASPNSGIPQFGSFQTQPMIQPNSHWPNQQEVQIVSQ
PQDETNYQTSQSGQTALQQDTINTDELSPKASEGGHPDHLNAQGKQQQSPASAPTESTHE
LTVVETNIAEHVPYDEQQKTLKEQDSLSNIKSHVGRVEPQEQNAESKVERAASDKQSEPQ
SRQHKPSNFPPTTQLNLKNSATENPNVVNQVDTMKSVTGGFGSQLPRVPKEPALLDERSL
LACIVRAVPAGPEGGIRISSTLPNRLGKMLAPLHWHDYKKQYGKLDDFVASRPELFVIEG
DFIHLREGAQQIISATTAAAKIAAATASSAPYSSLLPSVAVTPVAQSTRQKRGPAVDSRS
SNAILSGNGFTDQFNIIQGVSDVPVS

Transcript Sequence

Transcript ID

Zm00001d052723_T020
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:198876902:198882338:-1 gene:Zm00001d052723 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

CCACTATCCCCGGACCCCGGGCCAGTCTCACCTCCTTCCCTCGATCGCACGCCACTCCCG
TAGGAATCCCGAATCCCCCCACCCAAATTCCCGTCTAGCCGTCTACCCGATCGCCGTCCT
TCTCGCTGCCCGTAAACCCTAGCCCAGCCCTCTACCCCCGCCGTCGTTGCCCGTGCGCTG
TCGTGCTCGGGCTGCCCCCGCGGCGCCGCGAGCCAAACCCTAGCTGCCTCCTCCAGATCC
CGATTCCGCAGGGAAGCCGGAGAGGTGAGGGCCGCCCCGCCGCAGATGGAGCCCGCGGGG
GCGCGCAAGGAGTGGCGCGCCGTCCCCGACTCCTCGCTCCGCTCCAATGGCGCCGAGGAT
GCCGCGGAGCATGGGAAGCTGGGGCAGTCGGAGGAACGAGCTATCTACGAGGAAGGGGCG
GGTGGACTGGGCGACTTCTGTACCATCACTATTGATGGGAGCGGAGGGCTCAGCGAGGAC
ATCCTGCAGCAGCGCCTGCAAAGTGTCGCACGGCAGCGGGAGGAGCTGCAGCAAGTCGAG
ATCGAGTTGCGTGCGCAGGCCATTGCACACCCGCAGATCATCGAGGCGCAACAAAGCTTC
CAGGCTGCTGCCAAGGAGCATGCTGCAGCTGTGGCAAAGATCAAGGAGCAATTGCATGAG
CGGGAGCAGTACATTCTTGAATTAGAAATGAAACTCAATGACAAGGATAGAGAACTAAAT
GCTCTGAAGATTGATCATCAAACGGTGTGGGCAAATCAAGATCTTCTCAGAGAACAGACC
AAAGAGCTGGCAAGTGTCAGAAGGGAACGTGACAACTCTGAAGCTGAAAGAGCCCAACAT
CTTAAACAAATCCACGATCTCCAGGAACTTTTGCGAGAAAAAGAAAGCCAGTTCATTGCA
ATAGAGGAACAGCATAGGGCTGCTCAAGAGAACATTCTTTACAAAGATGAGCAGTTGAGG
GAAGCCCATGCTTGGGTTTCTCAAGTTCGAGAAATGGATGCATTGCAGTCTCAGTCCCTA
CAAGTTGAGTTACGTGAGCGCATGGAGCAATTTAATCAATATTGGATTAGTTCTCAACAA
CAGTATGCTGAAATGCAGCGGAGCCTTCTCCATACAATACAACAACTCCAGCAAGAATTA
GCTGAGGCAAGGGAACGGTCTGGTGCACAAAAGGATGGCCCACATGTTTCTAGGGAGGGA
TCAGCTGAATCATCACTTGTTCAAAGCATAGCGAACAGCGTGACTTCAAATGGTAGTGCA
ACTGCAGATGGGAGCCAGCAACTGTTGAAAAACAATGGAAGTGTGGATGTCTCTCTTAAG
GGCAATAATGCCTCAGCTGTACCTGTTCCATCTTTATTGGGAATAGGTGGTCCGGCTGCG
CATATTGCTGCAATGCATTCTTTTATGATTCATCCTCAAGGCATTCCTCAACCTTTAGCA
TCACCCAACTCTGGCATTCCTCAGTTTGGCAGTTTTCAGACACAGCCTATGATTCAACCA
AACTCACATTGGCCAAATCAGCAGGAAGTACAAATTGTCTCACAACCACAAGATGAAACA
AACTATCAGACATCCCAATCAGGTCAGACTGCATTGCAACAAGACACTATTAATACTGAT
GAGCTGTCCCCCAAGGCAAGTGAGGGTGGCCATCCAGACCATCTTAATGCCCAGGGGAAA
CAACAGCAGAGCCCTGCAAGTGCACCTACTGAATCAACTCATGAACTTACTGTTGTTGAA
ACAAACATAGCTGAACATGTACCTTATGATGAACAACAAAAAACCTTAAAAGAACAGGAT
TCACTATCAAATATAAAAAGCCATGTTGGAAGAGTTGAGCCTCAAGAGCAAAATGCTGAA
TCCAAGGTTGAAAGAGCTGCATCTGACAAGCAATCTGAACCTCAATCTAGACAGCATAAA
CCTTCAAACTTCCCTCCAACTACCCAGCTTAACTTGAAAAACAGTGCAACAGAGAATCCT
AATGTTGTAAATCAGGTTGATACAATGAAATCAGTTACAGGTGGTTTTGGTTCACAGTTA
CCTCGTGTACCTAAGGAACCTGCTCTCCTAGATGAGAGATCTCTATTGGCTTGTATTGTA
CGTGCAGTTCCTGCTGGACCTGAGGGTGGAATCAGGATTAGCTCAACTCTGCCAAATAGG
CTTGGGAAAATGTTGGCTCCTCTTCACTGGCATGATTATAAGAAGCAATATGGGAAGCTT
GATGATTTTGTGGCTAGTCGTCCAGAGCTGTTTGTGATTGAGGGAGACTTCATTCACCTT
CGTGAAGGAGCACAGCAGATCATTTCTGCTACTACAGCTGCTGCAAAAATAGCTGCTGCT
ACAGCATCTTCTGCCCCTTACTCATCCTTACTGCCTTCTGTTGCTGTTACTCCTGTGGCA
CAAAGCACTCGGCAAAAGAGGGGCCCTGCAGTTGATTCCAGATCATCAAATGCAATTCTT
TCTGGAAATGGCTTCACAGATCAATTTAACATCATTCAGGGGGTTAGTGACGTACCTGTT
TCAG