Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052695_T030
CDS Infomation

cds chromosome:B73_RefGen_v4:4:197651508:197659099:-1 gene:Zm00001d052695 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retinoblastoma-related protein 1
Sequence

ATGGACGGAGTCGCCAAGCCGTCCACGAGCTCGGGGTCGGGGGTCACGGATAGTGCCTCC
GCCGCCGCGGCCTCCATAGATGAGAGGTTCGCCGATCTGTGCGAGAGCAAGCTGGGACTA
GACGACAGCATGACGAGGCAGGCAATGCAGCTTTTCAATGAGACCAAGAACATCAAGTCC
AGCATGTCTTCCTTGGGCGGTGGATCGCCCGAGGAGGTCGAGAGGTTCTGGTCTGCCTGT
GTTATGTACTGTGTGTCAAGGCTCAGCAAAGCGCGGAGGTCGAAGGAAAGTGGCAGTGTC
TCACTTTGCCAGATTTTGAGGGCATCTAAGCTGAACATTGTGGATTTTTTCAAGGAGATG
CCGCAATTCTGCATAAAGGTTGCACACATTTTGACTGGCCTATATGGTTCAGATTGGGAA
AAGAGGCTTGAGTTGAAGGAACTGCAAGCGAATGTTGTCCATTTAAGCTTGCTAAGCAGG
CACTACAAGCGTGCATATCAGGAGCTATTCTTGCCAAATGATGGAAAGTGTTCAGACAGC
TCTTCAGAATCAAACAACCAAGAGGTTTCTGATTATTATCGCTTTGGATGGTTGCTCTTT
TTAGTCCTAAGAATCCAAACATTCAGCAGATTCAAGGATCTTGTGACATCTACGAATGAA
CTAGTTTCTGTGTTGGCTGTACTTATCATTCATATTCCTGTGCGGCTAAGGAATTTCGAT
ATAAAGGATTCATCCTACTTTGGTAAGAAATCAGATAGGGGAGTCAGTCTTATTGCTTCT
CTGTGTGAAAAATATCATACCTCAGAAGATGAGTTGAGCAAAGCACTGGAGAAGACAAAT
ACTCTCATACTGGATATTTTGAAAAAGAAGCCATGGACAGCTACTTCAGCATGCCAACAG
GATAATTTGACTTTCATTGATCCAGAAGGGTTGACAGTTTTTAAGGATTTGCTTCAGGGA
GGCTCATTGAAATCAAGTCTTCTAATCCTGGAAAAAGAATATGAAAATGCAATTAACACA
AGAGGCGAGCTAGATGAGCGCATGTTTGCTAATGATGAGGACAGTTTACTTGGCAGTGGA
AGCCTTTCAGGTGGAGCCATTAATTTACCAGGCACAAAGAGAAAGTATGATGTTATGGCC
TCACCTGCAAAATCAATATCAAGCCCAAATCCAATGTCTCCTCCACGTTTTTGTCTATCT
CCTAAAGGAAACAGCTTTTGCAACTCAAAGATGGCTCCTATCACTCCAGTGAGCACAGCC
ATGACAACTGCCAAGTGGCTTCGGAGTACAGTATCTCCGCTTCCATCAAAACCTTCTGGG
GAACTATTGCGCTTCTTCTCAGCATGTGATAAGGATGTAACAGATGACATTGTACACAGA
GCTGGGATTATACTTGGAGCCATATTCACGAGCAGTTCTTTTGGTGAACAGATCTGTACT
AATATGCGAAGCGCTAATAGGATGGATGCTATTTGGACAGAGCAAAGAAAAATGGAAGCC
CTTAAGCTATATTATAGGGTTCTGGAATCTATGTGTAGGGCAGAGTCACAGATCTTGAGT
GGGAACAATCTTACATTACTTTTGTCTAATGAACGTTTCCATCGGTGTATGATTGCATGT
TCTGCGGAGTTAGTTCTTGCAACTCACAAGACTGTCACTTTGATGTTCCCAGCTGTGTTG
GAGAAGACTGGCATTACAGCCTTTGACTTGAGTAAAGTCATAGAGGGTTTTGTTCGGCAT
GAAGATACACTCCCCAGAGAGTTAAAGCGTCATCTGAATTCTCTTGAGGAACGGCTTCTG
GAAAGCATGTCATGGGAGAAAGGGTCATCAATGTACAATTCTTTGATTGTTGCTAGGCCA
GTACTATCTATCGAAATAAATCGGTTAGGTTTACTGGCTGAACCGATGCCATCACTTGAT
GCAATTGCAGCACATCATAATATCTCAATGGGTGGCCTGCCGCCTCTTCCCTTCCAGAAA
CAGGAGCGTTTGCAAGATAAAGATGAAATCAGGTCTCCCAAAAGGGCGTGCACTGAGAGG
AGACATGTGCCGGTGGACAGCAATTCATTTCGATCACAAGTGAAGGACAGTATTAAATTG
AAGCTACCACCTCCTCTTCAATCAGCTTTTGCAAGTCCAACAAGACCGAATCCTGCAGCA
GGAGGTGAAACATGCGCAGAGACAGGAATAGCTGTGTTCTTTAGCAAGATATCAAAACTT
GCAGCCATTAGAATCAGAAGTCTCTGTGAAAGACTGCAACTTTCTCAGCAAGTTCTGGAG
CGAGTATATTCCCTTGTCCAGCAAATCCTTAGCCAACAGACTGGTCTCTTCTTCAACAGG
CACATTGATCAGATCATACTATGCAGCATATATGGAGTTGCCAAGATCTCTCAACTGCAA
CTTTCATTCAAGGAGATTGTTTTTGGGTATAGGAAACAACCTCAATGCAAGCCACAAGTT
TTTCGAAGTGTTTATGTTCATTGGCCCCCAACAAGCCATAATGGGAAAACAGGAGAAGAT
CATGTTGATATTATCACTTTCTACAATGAAGTATTTATTCCTGCTGTCAAGCCTTTGTTA
GTGGAGGTTGGACCTGGTGCTAGTCCAAAGAGGAAAGAAGAGGGAAAAGGTTCTGTTTAT
GTAGGTCCATACCCAGAATCCCCTCGGCTAGCTCGGTTTCCGAACCTTCCTGACATGTCT
CCAAAGAAGGTTTCTGCTACTCATAATGTATATGTCTCGCCACTACGATCATCAAAGCAG
ATGGATACTTTACTCTCACCAAGCCCAAAGAGCTATTATGCATGTGTCGGCGAGAGTACC
TATGCGTTCCAAAGCCCCTCCAAGGACCTGAAGGCTATCAACAACCGCCTAAAT

Peptide Sequence

PEP ID

Zm00001d052695_P030
PEP Infomation

pep chromosome:B73_RefGen_v4:4:197651508:197659099:-1 gene:Zm00001d052695 transcript:Zm00001d052695_T030 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retinoblastoma-related protein 1
Sequence

MDGVAKPSTSSGSGVTDSASAAAASIDERFADLCESKLGLDDSMTRQAMQLFNETKNIKS
SMSSLGGGSPEEVERFWSACVMYCVSRLSKARRSKESGSVSLCQILRASKLNIVDFFKEM
PQFCIKVAHILTGLYGSDWEKRLELKELQANVVHLSLLSRHYKRAYQELFLPNDGKCSDS
SSESNNQEVSDYYRFGWLLFLVLRIQTFSRFKDLVTSTNELVSVLAVLIIHIPVRLRNFD
IKDSSYFGKKSDRGVSLIASLCEKYHTSEDELSKALEKTNTLILDILKKKPWTATSACQQ
DNLTFIDPEGLTVFKDLLQGGSLKSSLLILEKEYENAINTRGELDERMFANDEDSLLGSG
SLSGGAINLPGTKRKYDVMASPAKSISSPNPMSPPRFCLSPKGNSFCNSKMAPITPVSTA
MTTAKWLRSTVSPLPSKPSGELLRFFSACDKDVTDDIVHRAGIILGAIFTSSSFGEQICT
NMRSANRMDAIWTEQRKMEALKLYYRVLESMCRAESQILSGNNLTLLLSNERFHRCMIAC
SAELVLATHKTVTLMFPAVLEKTGITAFDLSKVIEGFVRHEDTLPRELKRHLNSLEERLL
ESMSWEKGSSMYNSLIVARPVLSIEINRLGLLAEPMPSLDAIAAHHNISMGGLPPLPFQK
QERLQDKDEIRSPKRACTERRHVPVDSNSFRSQVKDSIKLKLPPPLQSAFASPTRPNPAA
GGETCAETGIAVFFSKISKLAAIRIRSLCERLQLSQQVLERVYSLVQQILSQQTGLFFNR
HIDQIILCSIYGVAKISQLQLSFKEIVFGYRKQPQCKPQVFRSVYVHWPPTSHNGKTGED
HVDIITFYNEVFIPAVKPLLVEVGPGASPKRKEEGKGSVYVGPYPESPRLARFPNLPDMS
PKKVSATHNVYVSPLRSSKQMDTLLSPSPKSYYACVGESTYAFQSPSKDLKAINNRLN

Transcript Sequence

Transcript ID

Zm00001d052695_T030
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:197651508:197659099:-1 gene:Zm00001d052695 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retinoblastoma-related protein 1
Sequence

CTGCCGCCATCCCCTCTCCCGCCTGCGAGGACCGGGCCCACCGCGCAGCGAGACGGACGG
GCTCCGTTTTACCGAGCAAGCTACCCCGCAGACCGCAGACCGCAGACGTATTAAAAGTCC
GTGCGAGCCGCTGGGATCCGAAAATATTTTTTGGCGCGCATCCCAACAGCCGCCGCCGCT
TCCCGTCCACCGGCACCGCCGCCGCAACCCTGTTAGAGCTTCCCTTCCGGTCGCTGGAGT
GCCTGGTTCCGGCCCCAGCAGCGGTTTCGGGCACTGGGTTGGGAGTGCTTGGAAGGGGAG
AAACATGGACGGAGTCGCCAAGCCGTCCACGAGCTCGGGGTCGGGGGTCACGGATAGTGC
CTCCGCCGCCGCGGCCTCCATAGATGAGAGGTTCGCCGATCTGTGCGAGAGCAAGCTGGG
ACTAGACGACAGCATGACGAGGCAGGCAATGCAGCTTTTCAATGAGACCAAGAACATCAA
GTCCAGCATGTCTTCCTTGGGCGGTGGATCGCCCGAGGAGGTCGAGAGGTTCTGGTCTGC
CTGTGTTATGTACTGTGTGTCAAGGCTCAGCAAAGCGCGGAGGTCGAAGGAAAGTGGCAG
TGTCTCACTTTGCCAGATTTTGAGGGCATCTAAGCTGAACATTGTGGATTTTTTCAAGGA
GATGCCGCAATTCTGCATAAAGGTTGCACACATTTTGACTGGCCTATATGGTTCAGATTG
GGAAAAGAGGCTTGAGTTGAAGGAACTGCAAGCGAATGTTGTCCATTTAAGCTTGCTAAG
CAGGCACTACAAGCGTGCATATCAGGAGCTATTCTTGCCAAATGATGGAAAGTGTTCAGA
CAGCTCTTCAGAATCAAACAACCAAGAGGTTTCTGATTATTATCGCTTTGGATGGTTGCT
CTTTTTAGTCCTAAGAATCCAAACATTCAGCAGATTCAAGGATCTTGTGACATCTACGAA
TGAACTAGTTTCTGTGTTGGCTGTACTTATCATTCATATTCCTGTGCGGCTAAGGAATTT
CGATATAAAGGATTCATCCTACTTTGGTAAGAAATCAGATAGGGGAGTCAGTCTTATTGC
TTCTCTGTGTGAAAAATATCATACCTCAGAAGATGAGTTGAGCAAAGCACTGGAGAAGAC
AAATACTCTCATACTGGATATTTTGAAAAAGAAGCCATGGACAGCTACTTCAGCATGCCA
ACAGGATAATTTGACTTTCATTGATCCAGAAGGGTTGACAGTTTTTAAGGATTTGCTTCA
GGGAGGCTCATTGAAATCAAGTCTTCTAATCCTGGAAAAAGAATATGAAAATGCAATTAA
CACAAGAGGCGAGCTAGATGAGCGCATGTTTGCTAATGATGAGGACAGTTTACTTGGCAG
TGGAAGCCTTTCAGGTGGAGCCATTAATTTACCAGGCACAAAGAGAAAGTATGATGTTAT
GGCCTCACCTGCAAAATCAATATCAAGCCCAAATCCAATGTCTCCTCCACGTTTTTGTCT
ATCTCCTAAAGGAAACAGCTTTTGCAACTCAAAGATGGCTCCTATCACTCCAGTGAGCAC
AGCCATGACAACTGCCAAGTGGCTTCGGAGTACAGTATCTCCGCTTCCATCAAAACCTTC
TGGGGAACTATTGCGCTTCTTCTCAGCATGTGATAAGGATGTAACAGATGACATTGTACA
CAGAGCTGGGATTATACTTGGAGCCATATTCACGAGCAGTTCTTTTGGTGAACAGATCTG
TACTAATATGCGAAGCGCTAATAGGATGGATGCTATTTGGACAGAGCAAAGAAAAATGGA
AGCCCTTAAGCTATATTATAGGGTTCTGGAATCTATGTGTAGGGCAGAGTCACAGATCTT
GAGTGGGAACAATCTTACATTACTTTTGTCTAATGAACGTTTCCATCGGTGTATGATTGC
ATGTTCTGCGGAGTTAGTTCTTGCAACTCACAAGACTGTCACTTTGATGTTCCCAGCTGT
GTTGGAGAAGACTGGCATTACAGCCTTTGACTTGAGTAAAGTCATAGAGGGTTTTGTTCG
GCATGAAGATACACTCCCCAGAGAGTTAAAGCGTCATCTGAATTCTCTTGAGGAACGGCT
TCTGGAAAGCATGTCATGGGAGAAAGGGTCATCAATGTACAATTCTTTGATTGTTGCTAG
GCCAGTACTATCTATCGAAATAAATCGGTTAGGTTTACTGGCTGAACCGATGCCATCACT
TGATGCAATTGCAGCACATCATAATATCTCAATGGGTGGCCTGCCGCCTCTTCCCTTCCA
GAAACAGGAGCGTTTGCAAGATAAAGATGAAATCAGGTCTCCCAAAAGGGCGTGCACTGA
GAGGAGACATGTGCCGGTGGACAGCAATTCATTTCGATCACAAGTGAAGGACAGTATTAA
ATTGAAGCTACCACCTCCTCTTCAATCAGCTTTTGCAAGTCCAACAAGACCGAATCCTGC
AGCAGGAGGTGAAACATGCGCAGAGACAGGAATAGCTGTGTTCTTTAGCAAGATATCAAA
ACTTGCAGCCATTAGAATCAGAAGTCTCTGTGAAAGACTGCAACTTTCTCAGCAAGTTCT
GGAGCGAGTATATTCCCTTGTCCAGCAAATCCTTAGCCAACAGACTGGTCTCTTCTTCAA
CAGGCACATTGATCAGATCATACTATGCAGCATATATGGAGTTGCCAAGATCTCTCAACT
GCAACTTTCATTCAAGGAGATTGTTTTTGGGTATAGGAAACAACCTCAATGCAAGCCACA
AGTTTTTCGAAGTGTTTATGTTCATTGGCCCCCAACAAGCCATAATGGGAAAACAGGAGA
AGATCATGTTGATATTATCACTTTCTACAATGAAGTATTTATTCCTGCTGTCAAGCCTTT
GTTAGTGGAGGTTGGACCTGGTGCTAGTCCAAAGAGGAAAGAAGAGGGAAAAGGTTCTGT
TTATGTAGGTCCATACCCAGAATCCCCTCGGCTAGCTCGGTTTCCGAACCTTCCTGACAT
GTCTCCAAAGAAGGTTTCTGCTACTCATAATGTATATGTCTCGCCACTACGATCATCAAA
GCAGATGGATACTTTACTCTCACCAAGCCCAAAGAGCTATTATGCATGTGTCGGCGAGAG
TACCTATGCGTTCCAAAGCCCCTCCAAGGACCTGAAGGCTATCAACAACCGCCTAAATAG