Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052556_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:192908263:192917762:-1 gene:Zm00001d052556 gene_biotype:protein_coding transcript_biotype:protein_coding description:Signal recognition particle 54 kDa protein chloroplastic
Sequence

ATGGAGGCCACCGCGCTCGCGTCCCACTCGTCCCCGTTCGCCGTCCACCGCTCGACAGGG
AAGCCAGCCTTCGCCTACCCCCACCGTGGAGGGCCCTCGATGGTCTCCTCTGTCCACCTC
CGCACGTCCCGGACCCCCGCCCGCTCTGCGGCATGGAGAAGGCGGAGGAGGGGGACCGGG
CTGGTTGTGCGCGCGGAGATGTTCGGCCAGCTCACCACCGGCCTCGAGTCCGCCTGGAAC
AAGCTGCGCGGCGTTGGCGTGCTAACAAAGGAAAATATTGCCGAACCAATGCGGGACATT
AGACGAGCACTTCTGGAAGCAGATGTTAGTTTGCCTGTTGTGAGACGGTTTGTTTCATCT
GTTAGTGATAAGGCTTTAGGTGCAAATGCTATCAGAGGAGTCCGACCAGACCAGCAATTA
GTGAAGATTGTGCATGACGAACTGGTACAACTGATGGGTGGAGAGGTATCGGATATTGTA
TTTGCAAAAAGTGGCCCGACAGTTATCTTGCTTGCAGGTCTACAGGGTGTTGGGAAGACT
ACTGTCTGTGCAAAGCTTGCGTTCTATTTGAAGAAACTGGGGAAGAGTTGTATGCTGGTT
GCTGCAGACATTTACAGGCCTGCAGCCATTGATCAACTCACTATACTGGGTAAACAGGTG
GGTGTACCAGTTTACTCAGAAGGAACAGAAGCCAAACCTACACAAATAACTAAGAATGCT
ATGGAAGAGGCAAAAAGCAAGAATATTGATGCTATTGTGGTGGATACTGCTGGAAGGCTG
CAGATTGATAGATCAATGATGGATGAATTGAAAGAAGTGAAGAAGGCTGTTAATCCTACA
GAAGTTCTGCTTGTCGTTGATGCCATGACTGGCCAAGAAGCAGCAGCACTAGTCACCACC
TTCAATATTGAGATTGGTATAACTGGTGCAATACTGACTAAATTGGATGGTGACTCCAGG
GGCGGAGCCGCACTAAGCGTTAAAGAGGTCTCTGGGAGGCCCATAAAATTTGTTGGGCGT
GGGGAGCGATTAGAGGACCTTGAGCTTTTCTACCCTGATCGCATGGCACAGCGAGTTCTG
GGAATGGGAGACGTGCTTTCATTTGTCGAAAAGACACAAGAAGTGATGAGGCAAGAAGAA
GCTATAGAATTACAGAAGAAGATCATGAGTGCAAAATTCGACTTCAACGATTTCTTAAAA
CAATCTCAAAACGTTGCGAAAATGGGTTCCATGAGCCGCATTATTGGAATGATGCCAGGC
ATGAACAAGATAACTCCCGCACAAATCCGAGAAGCTGAGAAAAGACTTGCATTCGTGGAG
TCAATGATCAATGCCATGACTGCTGAGGAAAGGGAGAAGCCAGAGTTACTGGCTGAATCA
CGTGAGAGGAGGATAAGAGTGGCTGAGGAGTCTGGAAAGACTGAACAAGAGGTGAGTCAA
TTGGTTGCCCAGCTTTTCCAAATGCGTGCTCAGATGCAGAAGTTGATGGGTATGGTGCAA
GGACAAGAAGCAATAGCTGGCATGGGAGATCTCATGGACTCGCTTAAATCTGAAGAGAAG
GCACCTCCTGGCACCGCGCGGCGGAAGAGAAGGAATAACACGTCTAAGCAGAGGGACCTG
GACGCAGTGCTGAGCTAG

Peptide Sequence

PEP ID

Zm00001d052556_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:192908263:192917762:-1 gene:Zm00001d052556 transcript:Zm00001d052556_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Signal recognition particle 54 kDa protein chloroplastic
Sequence

MEATALASHSSPFAVHRSTGKPAFAYPHRGGPSMVSSVHLRTSRTPARSAAWRRRRRGTG
LVVRAEMFGQLTTGLESAWNKLRGVGVLTKENIAEPMRDIRRALLEADVSLPVVRRFVSS
VSDKALGANAIRGVRPDQQLVKIVHDELVQLMGGEVSDIVFAKSGPTVILLAGLQGVGKT
TVCAKLAFYLKKLGKSCMLVAADIYRPAAIDQLTILGKQVGVPVYSEGTEAKPTQITKNA
MEEAKSKNIDAIVVDTAGRLQIDRSMMDELKEVKKAVNPTEVLLVVDAMTGQEAAALVTT
FNIEIGITGAILTKLDGDSRGGAALSVKEVSGRPIKFVGRGERLEDLELFYPDRMAQRVL
GMGDVLSFVEKTQEVMRQEEAIELQKKIMSAKFDFNDFLKQSQNVAKMGSMSRIIGMMPG
MNKITPAQIREAEKRLAFVESMINAMTAEEREKPELLAESRERRIRVAEESGKTEQEVSQ
LVAQLFQMRAQMQKLMGMVQGQEAIAGMGDLMDSLKSEEKAPPGTARRKRRNNTSKQRDL
DAVLS

Transcript Sequence

Transcript ID

Zm00001d052556_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:192908263:192917762:-1 gene:Zm00001d052556 gene_biotype:protein_coding transcript_biotype:protein_coding description:Signal recognition particle 54 kDa protein chloroplastic
Sequence

GCTCGGTGTCGTCTGCTCCAGCCTCCAGGCATTCGGTTCCGGCTCCTGCTTCCCTCTCCC
TTCTCCGGTTCTCCCCCTCCGCCGCGGAGATGGAGGCCACCGCGCTCGCGTCCCACTCGT
CCCCGTTCGCCGTCCACCGCTCGACAGGGAAGCCAGCCTTCGCCTACCCCCACCGTGGAG
GGCCCTCGATGGTCTCCTCTGTCCACCTCCGCACGTCCCGGACCCCCGCCCGCTCTGCGG
CATGGAGAAGGCGGAGGAGGGGGACCGGGCTGGTTGTGCGCGCGGAGATGTTCGGCCAGC
TCACCACCGGCCTCGAGTCCGCCTGGAACAAGCTGCGCGGCGTTGGCGTGCTAACAAAGG
AAAATATTGCCGAACCAATGCGGGACATTAGACGAGCACTTCTGGAAGCAGATGTTAGTT
TGCCTGTTGTGAGACGGTTTGTTTCATCTGTTAGTGATAAGGCTTTAGGTGCAAATGCTA
TCAGAGGAGTCCGACCAGACCAGCAATTAGTGAAGATTGTGCATGACGAACTGGTACAAC
TGATGGGTGGAGAGGTATCGGATATTGTATTTGCAAAAAGTGGCCCGACAGTTATCTTGC
TTGCAGGTCTACAGGGTGTTGGGAAGACTACTGTCTGTGCAAAGCTTGCGTTCTATTTGA
AGAAACTGGGGAAGAGTTGTATGCTGGTTGCTGCAGACATTTACAGGCCTGCAGCCATTG
ATCAACTCACTATACTGGGTAAACAGGTGGGTGTACCAGTTTACTCAGAAGGAACAGAAG
CCAAACCTACACAAATAACTAAGAATGCTATGGAAGAGGCAAAAAGCAAGAATATTGATG
CTATTGTGGTGGATACTGCTGGAAGGCTGCAGATTGATAGATCAATGATGGATGAATTGA
AAGAAGTGAAGAAGGCTGTTAATCCTACAGAAGTTCTGCTTGTCGTTGATGCCATGACTG
GCCAAGAAGCAGCAGCACTAGTCACCACCTTCAATATTGAGATTGGTATAACTGGTGCAA
TACTGACTAAATTGGATGGTGACTCCAGGGGCGGAGCCGCACTAAGCGTTAAAGAGGTCT
CTGGGAGGCCCATAAAATTTGTTGGGCGTGGGGAGCGATTAGAGGACCTTGAGCTTTTCT
ACCCTGATCGCATGGCACAGCGAGTTCTGGGAATGGGAGACGTGCTTTCATTTGTCGAAA
AGACACAAGAAGTGATGAGGCAAGAAGAAGCTATAGAATTACAGAAGAAGATCATGAGTG
CAAAATTCGACTTCAACGATTTCTTAAAACAATCTCAAAACGTTGCGAAAATGGGTTCCA
TGAGCCGCATTATTGGAATGATGCCAGGCATGAACAAGATAACTCCCGCACAAATCCGAG
AAGCTGAGAAAAGACTTGCATTCGTGGAGTCAATGATCAATGCCATGACTGCTGAGGAAA
GGGAGAAGCCAGAGTTACTGGCTGAATCACGTGAGAGGAGGATAAGAGTGGCTGAGGAGT
CTGGAAAGACTGAACAAGAGGTGAGTCAATTGGTTGCCCAGCTTTTCCAAATGCGTGCTC
AGATGCAGAAGTTGATGGGTATGGTGCAAGGACAAGAAGCAATAGCTGGCATGGGAGATC
TCATGGACTCGCTTAAATCTGAAGAGAAGGCACCTCCTGGCACCGCGCGGCGGAAGAGAA
GGAATAACACGTCTAAGCAGAGGGACCTGGACGCAGTGCTGAGCTAGTGAGTAGTGGCCT
AGTGTGCTGTATTATGAAAATGCATAGGTGGGCACTGAACCTGTGTAATTGCGGTTAATT
CGGCACACATTTTTTTTGTACATAACGTTTAGTCCCATGAGGGAAGATATGTTGGTCGCT
CTTGAAATTGGAGTAGGTTGTCATGAGGACATATCTAGTGCACATAGAAGATTGGTGTAC
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