Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d052449_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:4:190297943:190299313:-1 gene:Zm00001d052449 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spermidine hydroxycinnamoyl transferase
Sequence	ATGGACGTGCAGGTGCAGCGGAGCTTCGTGATACCCGCGCCGCAGTCGGAGCCGTCGGCG GAGGTGCCGCTGACGGTGTTCGACCTCGTCGCGCCCGCCTACCACGTCACCGTGCTGTTC GCCTACGCCGCGCCCAACCCCACCGACGCCGCCCTCCTGGACGCGCTCGCCGCCACGCTC CCGCGCTTCCCGCTCCTCACCGCGCGCCTCGTCGTCGCCGACGCCGACGAGCGCCGACGC CCGTTCTTCGTCACGGGGAGAGGCGGCGCGGGCGCGCTCGTTGTCGAGGCCACCGTGGCG TCCGCGCTCTCCGACCACCTCCCGCTCGCGCCCGCGCCGGAGCTCGCGCGCCTGCACGTG CCGGTCGGCGGCGACGTGGCTCCGCCGCCACCGCACATGCTCATGCTCCAGATCAACCGC TTCGCGTGCGGGGGCCTCGTCATCGCCTCGTCCTCGTACCACCAGGCCGCGGACGGCTAC TCCATGTCCACCTTCTTCCACGCGTGGGCCGACGCCGTCCGCGCCAACAACAAACACGAC ACTCTACTACCGGCGGCGCCGCCGGCACCGGCGCCGTACGGCCCGGGCGCCATCACGCCG CGCCGGCCGCCGCGGTGCGAGTTCGAGCACCGCGGCACCGAGTTCCTGCGCGCCGAGGAC GCCGCCGCCGGCAGGCCGGCGCCGGCCCGGGTGGACCCTTCGGAGATCGCCAACGTGCTG CTGCACCTCCCGAGCGACTTCGTGGCGGCGCTCAAGGCCTCAGCTGCGCCGCCGCAGGGA CAGGGCCGGTGGTACACGACCTTCGAGGCCGTGTCGGCGCACCTGTGGCGGAAGATCACG CTGGCGCGCGGGCGCGCCGACGACGCGTCGCGCACGGCGCTGAACGCGGCGGTGAACGGC CGCGCGCGCCTCGGCGCCGACGCCCTGGCGCGGGGCTTCTTCGGCAACGCGGTCCTCACG GCGAGCGCCGCCACCTGCGCCCGGGACCTGGCGCGGGGCGCCCTGGCCGACGCGGCGGCG CTGATCCGCGCGGCCGTGCGCGCGCGCGACCGCCAGTACTTCCAGTCCTTCGTCGACTTC GGGGAGCTGCACCTGCACGGCGGCGAGGAGCTGCTGGAGCCCACGGTCGGGGACGAGGAC AACGTGCTGCTCCCGGACGTCGCGTCCGACAGCTGGCTGCACCTGGAGCTGCACCGCCTG GACTTTGGGTGCGGCGGACGGCTGGCCGGGATCCTGCCGGCGAAGGTCCCGCTGGACGGG GTGGTCGTGCTCATACCCAGCCTGCGGAAAGGAGGCGGCGTCGACGCGTTCGTGGCGCTG TGGGACAAGCATGCCAAGGAGCTTATGGATATTGCTTACACCATGGACTAG

Peptide Sequence

PEP ID	Zm00001d052449_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:4:190297943:190299313:-1 gene:Zm00001d052449 transcript:Zm00001d052449_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spermidine hydroxycinnamoyl transferase
Sequence	MDVQVQRSFVIPAPQSEPSAEVPLTVFDLVAPAYHVTVLFAYAAPNPTDAALLDALAATL PRFPLLTARLVVADADERRRPFFVTGRGGAGALVVEATVASALSDHLPLAPAPELARLHV PVGGDVAPPPPHMLMLQINRFACGGLVIASSSYHQAADGYSMSTFFHAWADAVRANNKHD TLLPAAPPAPAPYGPGAITPRRPPRCEFEHRGTEFLRAEDAAAGRPAPARVDPSEIANVL LHLPSDFVAALKASAAPPQGQGRWYTTFEAVSAHLWRKITLARGRADDASRTALNAAVNG RARLGADALARGFFGNAVLTASAATCARDLARGALADAAALIRAAVRARDRQYFQSFVDF GELHLHGGEELLEPTVGDEDNVLLPDVASDSWLHLELHRLDFGCGGRLAGILPAKVPLDG VVVLIPSLRKGGGVDAFVALWDKHAKELMDIAYTMD

Transcript Sequence

Transcript ID	Zm00001d052449_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:190297943:190299313:-1 gene:Zm00001d052449 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spermidine hydroxycinnamoyl transferase
Sequence	ATGGACGTGCAGGTGCAGCGGAGCTTCGTGATACCCGCGCCGCAGTCGGAGCCGTCGGCG GAGGTGCCGCTGACGGTGTTCGACCTCGTCGCGCCCGCCTACCACGTCACCGTGCTGTTC GCCTACGCCGCGCCCAACCCCACCGACGCCGCCCTCCTGGACGCGCTCGCCGCCACGCTC CCGCGCTTCCCGCTCCTCACCGCGCGCCTCGTCGTCGCCGACGCCGACGAGCGCCGACGC CCGTTCTTCGTCACGGGGAGAGGCGGCGCGGGCGCGCTCGTTGTCGAGGCCACCGTGGCG TCCGCGCTCTCCGACCACCTCCCGCTCGCGCCCGCGCCGGAGCTCGCGCGCCTGCACGTG CCGGTCGGCGGCGACGTGGCTCCGCCGCCACCGCACATGCTCATGCTCCAGATCAACCGC TTCGCGTGCGGGGGCCTCGTCATCGCCTCGTCCTCGTACCACCAGGCCGCGGACGGCTAC TCCATGTCCACCTTCTTCCACGCGTGGGCCGACGCCGTCCGCGCCAACAACAAACACGAC ACTCTACTACCGGCGGCGCCGCCGGCACCGGCGCCGTACGGCCCGGGCGCCATCACGCCG CGCCGGCCGCCGCGGTGCGAGTTCGAGCACCGCGGCACCGAGTTCCTGCGCGCCGAGGAC GCCGCCGCCGGCAGGCCGGCGCCGGCCCGGGTGGACCCTTCGGAGATCGCCAACGTGCTG CTGCACCTCCCGAGCGACTTCGTGGCGGCGCTCAAGGCCTCAGCTGCGCCGCCGCAGGGA CAGGGCCGGTGGTACACGACCTTCGAGGCCGTGTCGGCGCACCTGTGGCGGAAGATCACG CTGGCGCGCGGGCGCGCCGACGACGCGTCGCGCACGGCGCTGAACGCGGCGGTGAACGGC CGCGCGCGCCTCGGCGCCGACGCCCTGGCGCGGGGCTTCTTCGGCAACGCGGTCCTCACG GCGAGCGCCGCCACCTGCGCCCGGGACCTGGCGCGGGGCGCCCTGGCCGACGCGGCGGCG CTGATCCGCGCGGCCGTGCGCGCGCGCGACCGCCAGTACTTCCAGTCCTTCGTCGACTTC GGGGAGCTGCACCTGCACGGCGGCGAGGAGCTGCTGGAGCCCACGGTCGGGGACGAGGAC AACGTGCTGCTCCCGGACGTCGCGTCCGACAGCTGGCTGCACCTGGAGCTGCACCGCCTG GACTTTGGGTGCGGCGGACGGCTGGCCGGGATCCTGCCGGCGAAGGTCCCGCTGGACGGG GTGGTCGTGCTCATACCCAGCCTGCGGAAAGGAGGCGGCGTCGACGCGTTCGTGGCGCTG TGGGACAAGCATGCCAAGGAGCTTATGGATATTGCTTACACCATGGACTAG