Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052420_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:189608905:189612305:1 gene:Zm00001d052420 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase superfamily protein
Sequence

ATGGAAGACCAGTCGCCTGACCGTACATCGGTCGGTTCAGCTTCAGCGCCGAAAAAGCAT
AGCGCTTCCTCACGAGGCCGGCGCCGTAACTTCTCGTCGTCAACGTGCAAGGATTTTCTC
CGCAAGTTTGTGGACAGCGAGCTTCTGACGTCAAGCCTAGAGGACTGGTTCTCCGGTCAC
AGCGAAGATTGTGGTTTCAGGAAGCCAGGTTTCGACGTTCCTTTCGAGCTTACAGAGTTA
CACAATTTCGATTACGCTCTGGAGGGCGTTACTTTTCAGCAGCTAGTACGGATGCCAAGC
GCTCTGTACGCGTCGACGTCGGATGTTTTTGAGGCCAGCGCGTATCTTGCTCTGGAGGAT
TTCCTTCACGCAGGCGTTAAAGGACTGTGGCAAACTTTCTGGGGTCCTGATGAAGCGATG
CCGTTCTCGGTTGCCTGTGTACACAGCACGAGCTCCAGATTTTATCCTGCTGAGAAGGCT
ATAAGCAGTGGAAGGCTCGATGGTGTTTGCGCGACTGCTGTGCTGCTGAAGAATTTGAAG
CCTTCACAAGGAAGGTGGGATCATATCGTCGTGCTGGCTTTGTTGAGACCTGATGTCGGA
ATGGTTTCCGCACAGGGTGACGAGGAGCCGTCTCCTGCTGTCTTAGGGGAGGCACTGTTC
TTTGCTCTGCGTGTCCTGCTATCTCGAAGCCTCAGCAAGTCCTCCACCGTTCTTCGCAAT
TCGGACTCTGTTTACGTGCTTCTTTTTGATTCACAGTTTGGCGGAGTGGTAAAAGTGCAA
GGTGATTTGAACAGGCTGGATTTTGATCTCAACAACGTTTATGACTGTGCTGCTGAATGG
ATAAAGAAACATTCCAGAATTTCAGTCTGTTCCGTAGACCGAGTATGGAACAAACTTGGG
AATGCTAACTGGGGAGACATTGGGACCCTTCAGGTTCTCATCGCAATATTTCACTCGATG
ATCCAATTTTACGGAGAGCCTAAGTATTCTCTCGATGAACTGGCAACGGAACATAGTTCA
AGGCTACAGAGCCGAAGATCAGAAAGACATCTGGTTGACAGACAAGCTAATGGCAATGGT
TTATTTCGATTCCAACAGCGAAGTCATTCTCCTGAAATTGTTGAGTTACAGGAGGAAGCA
GCAGTTGATGTGAAACCACATGAAACCTTAAGGCTTGAAATAGGGTCTGTTGTATTGATG
GATGATGCTTACACACAGAAAGGTTTTCAAATCAGTGACATCCTAACAGGCAGTGATCCT
CCTATTTATACTTCTGCTCCTGTGGAAGAACCTACCAAAACTTGTTTGCTGTATGTAGGC
TCCAGCCCTTCTCATCTGGATCCGGCATGGGAGGATATGGACTCCTGGTACCAAGTACAG
AGGCAGACAAAAGTACTGACCGTGATGAAGCAAAGATGCATTTCCAGCAGATATATACCA
CACATGGAATCGTCCGGACGGGTCATCCATCCAGGCCCATGTAACAACCCTAACTCAAAT
GCAAGTTGTGGTCATCCATGGTGCAGTACTCCAATGCTTGTCACCTCACCAGTTGGTGAG
ACCATTTCGAATCTGATACGGAATGGATTGTTTGGTGCCGAGGAGGCTCTGAGATGTTGC
CATGACTGTTTATCTGCTCTTGCTGCAGCAGCATCTGCAGGAGTCCGTCACGGTGATATC
CAGCCGGAGAATGTGATCTGTGTCAACAATGGTTCAACACATCCGTATTTTGTGCTTATT
GGATGGGGCCATGCTATCCTTGAAGATAGGGATCGACCAGTAATGAATCTATTCTTCTCG
TCTACATTTGCGCTCCAGGAAGGAAAACTATGTGGAGCGTCCGACGCAGAAAGTTTAATC
TACCTTCTATATTTCTCTTGTGGCGGAGTTTGCCCCGACCTTGACTCTGTCGAAAGTGCA
CTTCAGTGGAGGGAGACGTCATGGTCTAGGAGAGTCATACAGCAGAAGTTGGGCGACATC
TCAGCAGTGTTAAAAGCTTTTGCGGATTATGTCGACAGCCTCTGTGGAACTTCGTACCCG
ATGGACTATGAGATCTGGTTGAAACGACTGCGAAGAACAATAAACGAAGATCATGGGAAG
GAGGTTGACACATCCTCGAGTTAA

Peptide Sequence

PEP ID

Zm00001d052420_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:189608905:189612305:1 gene:Zm00001d052420 transcript:Zm00001d052420_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase superfamily protein
Sequence

MEDQSPDRTSVGSASAPKKHSASSRGRRRNFSSSTCKDFLRKFVDSELLTSSLEDWFSGH
SEDCGFRKPGFDVPFELTELHNFDYALEGVTFQQLVRMPSALYASTSDVFEASAYLALED
FLHAGVKGLWQTFWGPDEAMPFSVACVHSTSSRFYPAEKAISSGRLDGVCATAVLLKNLK
PSQGRWDHIVVLALLRPDVGMVSAQGDEEPSPAVLGEALFFALRVLLSRSLSKSSTVLRN
SDSVYVLLFDSQFGGVVKVQGDLNRLDFDLNNVYDCAAEWIKKHSRISVCSVDRVWNKLG
NANWGDIGTLQVLIAIFHSMIQFYGEPKYSLDELATEHSSRLQSRRSERHLVDRQANGNG
LFRFQQRSHSPEIVELQEEAAVDVKPHETLRLEIGSVVLMDDAYTQKGFQISDILTGSDP
PIYTSAPVEEPTKTCLLYVGSSPSHLDPAWEDMDSWYQVQRQTKVLTVMKQRCISSRYIP
HMESSGRVIHPGPCNNPNSNASCGHPWCSTPMLVTSPVGETISNLIRNGLFGAEEALRCC
HDCLSALAAAASAGVRHGDIQPENVICVNNGSTHPYFVLIGWGHAILEDRDRPVMNLFFS
STFALQEGKLCGASDAESLIYLLYFSCGGVCPDLDSVESALQWRETSWSRRVIQQKLGDI
SAVLKAFADYVDSLCGTSYPMDYEIWLKRLRRTINEDHGKEVDTSSS

Transcript Sequence

Transcript ID

Zm00001d052420_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:189608905:189612305:1 gene:Zm00001d052420 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase superfamily protein
Sequence

GAAATAAAACGAGGAGCCGATCGATTTCCCTCTTCAAATAAAAACCCCACCTTTTCCCCA
TCTCCTTCCGTCTGTTCGCGGGGGGCGACGGATGTCTTCTCGTTGCGGCTGGGGCGGCCG
TCCAGCGACCACGGAGTCAGTCGGGAGTAGTCGTCCGACTACCGCTCCAGCTCCACCAGC
CGCTCCAATCTAGCCGCCGGCCCGGCCCTGGCCCCTGGGGGAGACGACCAGTCGACAACG
ACGACCCGGCCGCCTCCTCATGGAAGACCAGTCGCCTGACCGTACATCGGTCGGTTCAGC
TTCAGCGCCGAAAAAGCATAGCGCTTCCTCACGAGGCCGGCGCCGTAACTTCTCGTCGTC
AACGTGCAAGGATTTTCTCCGCAAGTTTGTGGACAGCGAGCTTCTGACGTCAAGCCTAGA
GGACTGGTTCTCCGGTCACAGCGAAGATTGTGGTTTCAGGAAGCCAGGTTTCGACGTTCC
TTTCGAGCTTACAGAGTTACACAATTTCGATTACGCTCTGGAGGGCGTTACTTTTCAGCA
GCTAGTACGGATGCCAAGCGCTCTGTACGCGTCGACGTCGGATGTTTTTGAGGCCAGCGC
GTATCTTGCTCTGGAGGATTTCCTTCACGCAGGCGTTAAAGGACTGTGGCAAACTTTCTG
GGGTCCTGATGAAGCGATGCCGTTCTCGGTTGCCTGTGTACACAGCACGAGCTCCAGATT
TTATCCTGCTGAGAAGGCTATAAGCAGTGGAAGGCTCGATGGTGTTTGCGCGACTGCTGT
GCTGCTGAAGAATTTGAAGCCTTCACAAGGAAGGTGGGATCATATCGTCGTGCTGGCTTT
GTTGAGACCTGATGTCGGAATGGTTTCCGCACAGGGTGACGAGGAGCCGTCTCCTGCTGT
CTTAGGGGAGGCACTGTTCTTTGCTCTGCGTGTCCTGCTATCTCGAAGCCTCAGCAAGTC
CTCCACCGTTCTTCGCAATTCGGACTCTGTTTACGTGCTTCTTTTTGATTCACAGTTTGG
CGGAGTGGTAAAAGTGCAAGGTGATTTGAACAGGCTGGATTTTGATCTCAACAACGTTTA
TGACTGTGCTGCTGAATGGATAAAGAAACATTCCAGAATTTCAGTCTGTTCCGTAGACCG
AGTATGGAACAAACTTGGGAATGCTAACTGGGGAGACATTGGGACCCTTCAGGTTCTCAT
CGCAATATTTCACTCGATGATCCAATTTTACGGAGAGCCTAAGTATTCTCTCGATGAACT
GGCAACGGAACATAGTTCAAGGCTACAGAGCCGAAGATCAGAAAGACATCTGGTTGACAG
ACAAGCTAATGGCAATGGTTTATTTCGATTCCAACAGCGAAGTCATTCTCCTGAAATTGT
TGAGTTACAGGAGGAAGCAGCAGTTGATGTGAAACCACATGAAACCTTAAGGCTTGAAAT
AGGGTCTGTTGTATTGATGGATGATGCTTACACACAGAAAGGTTTTCAAATCAGTGACAT
CCTAACAGGCAGTGATCCTCCTATTTATACTTCTGCTCCTGTGGAAGAACCTACCAAAAC
TTGTTTGCTGTATGTAGGCTCCAGCCCTTCTCATCTGGATCCGGCATGGGAGGATATGGA
CTCCTGGTACCAAGTACAGAGGCAGACAAAAGTACTGACCGTGATGAAGCAAAGATGCAT
TTCCAGCAGATATATACCACACATGGAATCGTCCGGACGGGTCATCCATCCAGGCCCATG
TAACAACCCTAACTCAAATGCAAGTTGTGGTCATCCATGGTGCAGTACTCCAATGCTTGT
CACCTCACCAGTTGGTGAGACCATTTCGAATCTGATACGGAATGGATTGTTTGGTGCCGA
GGAGGCTCTGAGATGTTGCCATGACTGTTTATCTGCTCTTGCTGCAGCAGCATCTGCAGG
AGTCCGTCACGGTGATATCCAGCCGGAGAATGTGATCTGTGTCAACAATGGTTCAACACA
TCCGTATTTTGTGCTTATTGGATGGGGCCATGCTATCCTTGAAGATAGGGATCGACCAGT
AATGAATCTATTCTTCTCGTCTACATTTGCGCTCCAGGAAGGAAAACTATGTGGAGCGTC
CGACGCAGAAAGTTTAATCTACCTTCTATATTTCTCTTGTGGCGGAGTTTGCCCCGACCT
TGACTCTGTCGAAAGTGCACTTCAGTGGAGGGAGACGTCATGGTCTAGGAGAGTCATACA
GCAGAAGTTGGGCGACATCTCAGCAGTGTTAAAAGCTTTTGCGGATTATGTCGACAGCCT
CTGTGGAACTTCGTACCCGATGGACTATGAGATCTGGTTGAAACGACTGCGAAGAACAAT
AAACGAAGATCATGGGAAGGAGGTTGACACATCCTCGAGTTAATGCTGCAACACATTCTC
TTGCAGATCCAAAATTTGGAAGATCAAGAGTGATAATCAGCTCATTACCTTTTGTTGTTG
TTGTAGATAATTTATTTGTGGGAGGTCCATAGGTCATAGTATTGTCCATCCTTTTGCACC
ATTTTTCTTGGATATAAGGGTATTTCAAAAGTTGCGATCTGCTGCTGCTATCCTCAATGG
GATCACTGTCAATGTTTTCTATTCCTTGGTCTTGCCTTCAGCCCTTCACACAGGAGATCC
TTGATGATATCAGCAACATGATGTATTTTGTGAATCTTTGGTAAATTGGTGAGCCTCTGC
TCTTGTTGCCCTCAGAGATTCTGGTCCCATTTTATTCGGTTCTGGTAGGCTTCAGGATGG
TTTGTTTTTCTTGTGATCAGTGTCTAAACTGTTAATCGGTTGGTAAATTTGTAACTGCTC
TAGAATAGAGGTTACATAGTAGCATTTGAGCTTGACTAAGTTATTTGTGGGGTGCGAGGT
TCCATGTAATTATGTAAATGTTCTACTGAGCTGCTCAGAGTCTTATCCTACTA