Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d052380_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:4:188747594:188751193:1 gene:Zm00001d052380 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:scarecrow1 description: scarecrow1
Sequence	ATGCCACCGCCACCGCCTCCGCCTCCTCTCACTCCTTATTGCCGCCGCTGCCCTCCCCCA CACCTCCCTCCGCCTCCTCCTTCTTCCCCAAACCACTTCCTCCTCCACTACCTCCATCAG CTAGACCACCAAGAAGCCGCCGCCGCCGCCATGGTCCGCAAGCGCCCCGCGTCCGACATG GACCTCCCGCCGCCGCGCCGCCACGTCACGGGCGACCTCTCCGACGTCACGGCGGCCGCT GCCGCCGGTGTTGGTGGTAGTGGCGCGCCGTCCTCCGCCAGCGCGCAGCTGCCCGCGCTG CCCACCCAGCTCCACCAGCTGCCCCCCGCGTTCCAGCACCACGCGCCGGAGGTGGACGTG CCCGCGCACCCGGCCCCGGCCGCCCACGCGCAGGCGGGCGGCGAGGCAACCGCGTCCACG ACCGCGTGGGTGGACGGCATCATCCGCGACATCATCGGGAGCAGCGGCGGCGCCGCGGTC TCCATCACGCAGCTCATCCACAACGTCCGCGAGATCATCCACCCCTGCAACCCCGGCCTC GCGTCGCTCCTGGAGCTCCGCCTCCGCTCCCTCCTCGCAGCCGACCCGGCCCCACTGCCG CCGCCGCCGCAGCCGCAGCAGCATGCTCTCCTGCACGGCGCTCCGGCCGCCGCTCCCGCG GGGCTGACGCTCCCTCCCCCGCCACCGCTTCCGGACAAGCGCCGCCACGAGCATCCACCG CCGTGCCAGCAGCAACAGCAGGAGGAACCGCATCCGGCGCCGCAGTCGCCCAAGGCCCCG ACCGCGGAAGAGACCGCAGCGGCGGCCGCCGCCGCACAAGCAGCAGCTGCTGCGGCCGCC AAGGAGCGGAAGGAGGAGCAGCGGCGGAAGCAGCGCGACGAGGAGGGCCTCCACCTGCTG ACGCTGCTGCTGCAGTGCGCCGAGGCCGTGAACGCGGACAACCTGGACGACGCGCACCAG ACGCTGCTGGAGATCGCGGAGCTAGCGACGCCGTTCGGCACCTCGACGCAGCGCGTGGCC GCCTACTTCGCGGAGGCCATGTCGGCGCGGCTCGTCAGCTCCTGCCTGGGCCTGTACGCG CCGCTGCCGCCGGGCTCCCCCGCCGCGGCGCGCCTCCACGGCCGCGTCGCCGCCGCGTTC CAGGTGTTCAACGGCATCAGCCCCTTCGTCAAGTTCTCGCACTTCACCGCCAACCAGGCC ATCCAGGAGGCGTTCGAGCGGGAGGAGCGCGTGCACATCATCGACCTCGACATCATGCAG GGGCTGCAGTGGCCGGGGCTCTTCCACATCCTTGCCTCCCGCCCCGGGGGCCCGCCCAGG GTGAGGCTCACCGGCCTCGGGGCGTCCATGGAGGCGCTCGAGGCCACGGGGAAGCGCCTC TCCGATTTCGCCGACACGCTCGGCCTGCCCTTCGAGTTCTGCGCCGTCGCCGAGAAGGCC GGCAATGTTGACCCGGAGAAGCTAGGGGTCACGAGGCGGGAGGCCGTCGCCGTCCACTGG CTGCACCACTCGCTCTACGACGTCACTGGCTCCGACTCCAACACGCTCTGGCTCATCCAA AGGCTGGCCCCCAAGGTGGTGACAATGGTGGAGCAGGACCTGAGCCACTCGGGCTCCTTC CTGGCGCGCTTCGTGGAGGCCATCCACTACTACTCGGCGCTGTTCGACTCGCTGGACGCG AGCTACGGCGAGGACAGCCCCGAGCGGCACGTCGTGGAGCAGCAGCTGCTGTCGCGGGAG ATCCGCAACGTGCTGGCCGTGGGCGGGCCGGCCCGCACCGGCGACGTCAAGTTCGGCAGC TGGCGCGAGAAGCTGGCGCAGTCCGGGTTCCGCGCCGCCTCGCTCGCCGGCAGCGCCGCG GCGCAGGCGTCCCTGCTGCTCGGCATGTTCCCCTCCGACGGGTACACGCTGGTGGAGGAG AACGGCGCGCTGAAGCTCGGGTGGAAGGACCTCTGCCTGCTCACCGCGTCGGCCTGGCGC CCCATCCAGGTGCCGCCGTGCCGTTGA

Peptide Sequence

PEP ID	Zm00001d052380_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:4:188747594:188751193:1 gene:Zm00001d052380 transcript:Zm00001d052380_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:scarecrow1 description: scarecrow1
Sequence	MPPPPPPPPLTPYCRRCPPPHLPPPPPSSPNHFLLHYLHQLDHQEAAAAAMVRKRPASDM DLPPPRRHVTGDLSDVTAAAAAGVGGSGAPSSASAQLPALPTQLHQLPPAFQHHAPEVDV PAHPAPAAHAQAGGEATASTTAWVDGIIRDIIGSSGGAAVSITQLIHNVREIIHPCNPGL ASLLELRLRSLLAADPAPLPPPPQPQQHALLHGAPAAAPAGLTLPPPPPLPDKRRHEHPP PCQQQQQEEPHPAPQSPKAPTAEETAAAAAAAQAAAAAAAKERKEEQRRKQRDEEGLHLL TLLLQCAEAVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYA PLPPGSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQ GLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCAVAEKA GNVDPEKLGVTRREAVAVHWLHHSLYDVTGSDSNTLWLIQRLAPKVVTMVEQDLSHSGSF LARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGS WREKLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR PIQVPPCR

Transcript Sequence

Transcript ID	Zm00001d052380_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:188747594:188751193:1 gene:Zm00001d052380 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:scarecrow1 description: scarecrow1
Sequence	GCGGCGTCTTCCTCTTTACTCCTCCCGCTCTCCCTCCCTCGCACCGTCCGTCTGCTAGCT CAGCCTACTCACTCCACTCAACTCACCCCCAACTCCACTCCGCTCCCGAGCCCGGACTGA CTGACTGACTGTGGTGGTGGTGGTGCATCAGCAGCCCGCGCGGCGCCAAAACACGCAAAC TGCTCCCTCCCTCACTCACCCCTATCCCCCGCGCTGGGTCGCCCGATCGCCATGCGCGCG GCGGCTTCCTCTTGGCGTTTCTAGATGGGCTCCTCCTCCTCCCTCCTCTTCTCCTCGTCC TCCTCCGCCGCATCCACCGCCCCCCACTCCTTTCCCCACTCTCATGCCACCGCCACCGCC TCCGCCTCCTCTCACTCCTTATTGCCGCCGCTGCCCTCCCCCACACCTCCCTCCGCCTCC TCCTTCTTCCCCAAACCACTTCCTCCTCCACTACCTCCATCAGCTAGACCACCAAGAAGC CGCCGCCGCCGCCATGGTCCGCAAGCGCCCCGCGTCCGACATGGACCTCCCGCCGCCGCG CCGCCACGTCACGGGCGACCTCTCCGACGTCACGGCGGCCGCTGCCGCCGGTGTTGGTGG TAGTGGCGCGCCGTCCTCCGCCAGCGCGCAGCTGCCCGCGCTGCCCACCCAGCTCCACCA GCTGCCCCCCGCGTTCCAGCACCACGCGCCGGAGGTGGACGTGCCCGCGCACCCGGCCCC GGCCGCCCACGCGCAGGCGGGCGGCGAGGCAACCGCGTCCACGACCGCGTGGGTGGACGG CATCATCCGCGACATCATCGGGAGCAGCGGCGGCGCCGCGGTCTCCATCACGCAGCTCAT CCACAACGTCCGCGAGATCATCCACCCCTGCAACCCCGGCCTCGCGTCGCTCCTGGAGCT CCGCCTCCGCTCCCTCCTCGCAGCCGACCCGGCCCCACTGCCGCCGCCGCCGCAGCCGCA GCAGCATGCTCTCCTGCACGGCGCTCCGGCCGCCGCTCCCGCGGGGCTGACGCTCCCTCC CCCGCCACCGCTTCCGGACAAGCGCCGCCACGAGCATCCACCGCCGTGCCAGCAGCAACA GCAGGAGGAACCGCATCCGGCGCCGCAGTCGCCCAAGGCCCCGACCGCGGAAGAGACCGC AGCGGCGGCCGCCGCCGCACAAGCAGCAGCTGCTGCGGCCGCCAAGGAGCGGAAGGAGGA GCAGCGGCGGAAGCAGCGCGACGAGGAGGGCCTCCACCTGCTGACGCTGCTGCTGCAGTG CGCCGAGGCCGTGAACGCGGACAACCTGGACGACGCGCACCAGACGCTGCTGGAGATCGC GGAGCTAGCGACGCCGTTCGGCACCTCGACGCAGCGCGTGGCCGCCTACTTCGCGGAGGC CATGTCGGCGCGGCTCGTCAGCTCCTGCCTGGGCCTGTACGCGCCGCTGCCGCCGGGCTC CCCCGCCGCGGCGCGCCTCCACGGCCGCGTCGCCGCCGCGTTCCAGGTGTTCAACGGCAT CAGCCCCTTCGTCAAGTTCTCGCACTTCACCGCCAACCAGGCCATCCAGGAGGCGTTCGA GCGGGAGGAGCGCGTGCACATCATCGACCTCGACATCATGCAGGGGCTGCAGTGGCCGGG GCTCTTCCACATCCTTGCCTCCCGCCCCGGGGGCCCGCCCAGGGTGAGGCTCACCGGCCT CGGGGCGTCCATGGAGGCGCTCGAGGCCACGGGGAAGCGCCTCTCCGATTTCGCCGACAC GCTCGGCCTGCCCTTCGAGTTCTGCGCCGTCGCCGAGAAGGCCGGCAATGTTGACCCGGA GAAGCTAGGGGTCACGAGGCGGGAGGCCGTCGCCGTCCACTGGCTGCACCACTCGCTCTA CGACGTCACTGGCTCCGACTCCAACACGCTCTGGCTCATCCAAAGGCTGGCCCCCAAGGT GGTGACAATGGTGGAGCAGGACCTGAGCCACTCGGGCTCCTTCCTGGCGCGCTTCGTGGA GGCCATCCACTACTACTCGGCGCTGTTCGACTCGCTGGACGCGAGCTACGGCGAGGACAG CCCCGAGCGGCACGTCGTGGAGCAGCAGCTGCTGTCGCGGGAGATCCGCAACGTGCTGGC CGTGGGCGGGCCGGCCCGCACCGGCGACGTCAAGTTCGGCAGCTGGCGCGAGAAGCTGGC GCAGTCCGGGTTCCGCGCCGCCTCGCTCGCCGGCAGCGCCGCGGCGCAGGCGTCCCTGCT GCTCGGCATGTTCCCCTCCGACGGGTACACGCTGGTGGAGGAGAACGGCGCGCTGAAGCT CGGGTGGAAGGACCTCTGCCTGCTCACCGCGTCGGCCTGGCGCCCCATCCAGGTGCCGCC GTGCCGTTGATGAGACCTCTGCCTGCTCCTGCTTGCGTTGAGAGGCCGCCACTCCACTTG TTTTGCATCTGTAGCTGCTCGGTTTGGTCATCAGCTGGGAGATAAGAAAAGCGGAAACGT ACTAATTGCTCTGGAGTAGATCCATCCATTCACAGTGATAGTTACTGATGTACTAAGCTT TAATTAGTTCAATGCTAGATCGTTCTTGTTCAGGTGTCGATCGCGTATCCTTGTCCTTGG TCTCCTTTTCATTTTGGTGCTTTGTCTAGTCGCTTTCCCGACTAATGCCGTGCTCTTCAT GCGCGTTCTAGTGAAGATTCTTGCCGAGAATATTAGCATAGTTTTCATGTAAAGTAGCCA TCAAGCAAGTATTAATTTGTGGCTACTTCAATGACATCCTAAGGCCATGTTTT