Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052361_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:188290914:188296399:-1 gene:Zm00001d052361 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expressed protein; protein
Sequence

ATGGAACCTCACAGCCTGCGGTTCGTCAGGTGCCCGAAATGCCACCAGCTCCTCGTCGAG
TACCCCTCCATTCCTGTCTACAAGTGTGGCGGCTGTGGCACGGTTCTCAGAGCGAAACAT
CGGGCTGCCCCTGCAGCACGAGCTGGTTCAGAATCTGGGGAGCACAGCACCGGCTCTCCG
TGTAGCCTGAACGGCTCCCCTAGCCAGAGTAGCGGATCGATCTGCTCGGGCGAACAGAGA
GCTGGCTCCTCTGTTGATCGGCCTCATGAGGCCACGGCTCATGGAAGCATGTCCTCCGCT
GCCAACAACATCGACTCGTGTGACGGCACAGTCCATGAAAGAACCATGTCTGCAGCAGAT
AGTGGTGTAACCCATGCCGAGCATCCGGAGGAGGGCAAGTGCTCCTTAGCTGATGATGGA
AATATCCAGAAGTCTGGGGTTATGGTCAAAGAAAAAGAGACACATGGACAAAACGCTGGG
GCTAGTTTGGATTTAACTGAAAGAGTTGAGAATGTTGACACTGGTGAAAAGGCGAGCGGA
GGTAAAATCGGTGATATTGGCACTAGTCAACTGAGCATGACACTGTATGAGAAAAGTCAG
GCTGCTCACAGGGAGGAGAGGCCACGCAGGTATGAAGGCGTGCATGTTGAGTCTCACAAA
GCTCTGATCGAAGAGTTGGAGAGGTCTCTTTCGTTCAGCAGTGAGGATGACTACTTCTCG
GACGAAGCAGAAAGCAGTGGCCTCAGTGATGCTCTGCGTAACCAAATGGGTAGCCGCAGG
TTTATGCTAGGGGGCAGAGTGAATGATGCGCCCCGAAGCGATCCACATGGTCGATTGATT
GAAGAACTAGAGATGTCTTTCAGCGATGCAGAAGAGCCATTGGAGCAGCATGCTATGGGT
TCAGAGAGAGTTCATGGAAATGTGCTTGACAAGGATCCACAGATCCTGAGTGATAAAAGT
GCACATCCATGTGAAGAAAGCCTCTCATCATTTGAGAGTGGACACCTCAAATCTGAACAA
ACTCCTCACCAGGAAAGCAGGGCAATAGGGGCAATAGGCAATGGCAATCAAGGAAATGAG
CGTATTGAAGATAACAATAATACTGCCGACTCTGTTCATGGGAGTGAGCATATTGTGATT
GACGATGACAAAATTGCAGATATATTCCACGAGAAAGAACATGATAAGGATTGCCAGCTT
GCAAACACAGAAAGTGCATACCCTTCTGAAGGAAGCACCTCTGCTGTCGATGATTGCAGT
ATTGAAGTTCAGCAAAGTTTTCAACCAAATGACCTGACAGCAGTCGATGAGTGCAGTATT
GAAGTTCAGCAAAGTTTTCAACCAAATGACCTGACAGCAGATGTCAATCAAGAAATGGAA
GATGATAAGATAACCAATGATAACATTGTACCTGCAGATTCCCATGAGAAAGAGCATGAG
AATGATAATCTTATTCATGCGCCTGCAGATGAAGACATTTCAGAGAGAGTTGGTGTAAAT
GAAGAGCTAACAGCAGATGGCACTCAAGAAATGGAAGATGGCTTCATGGAAGATGACAAC
ATGATCAATTGTGTGCATGACAAAGATAATTCTGTGCTTGCAGATGAAAACATTGCAGAG
AAAGTTCATATGCATGAAGATTTAAAAACTGATGGCACTCAGGAAATGGAAGAGGGTTGT
ATGGAAGACAGCAACATGAGCAATTGTATTCATGTCAGTGATAATCTTGTATTTGCAGAT
GAAGGCATTGCAGATAGAGTTCATGGAAATGAAGAGACAGCTGATGGCGCTGGAGAAAAT
GAACAGAGCCTAATGGAAAATGAAAATGTGAATGTTGCTGTTGCAGCTGAGTTCATTGCG
AAGAAGATTCACGAGAATGAGCATGGTAGGGATCAGCGGTCCCTGGAGGACGGAAGTGCA
CAGCTGTATGAAGGAGTCATCACTCCATTCAGTGCCAGATACGTTGAATCTGAACAAAGT
TTTCAACAAGATGAGCCAATACCTGATGCCACTGAAGAAAAGGAAGATGATTTTATGGAA
GATGGAAATATGGCCAACTGCATTGAAGAAAGCATGGCAGCTGTTGCTAGGTTCTCAAGC
TTGCCAAATAAGAGGAATCAGTCCAAGTTAGCTAGCTTTAATAAGAACAAAGAACAAATG
ACCTACAGATCTAGAGGTAGCCAACTTCGTCAGGGACGTTCACTTGATTCTGAAGATTTT
GGTTCAATTCAAAACTTCATGGAGTCACAAATGGATGGCACCTCAAGTTCTCTCTCAAGC
GGGTCTCCCAGTCGAGGCGATCCGGTGCACAGAACAGCAAACAAGTTCAATAATAACTGT
AGACACGAGCGCCTCAAAAAGATGGATGAACTAAGAGATCAGCTAAGTAGGCTTTCGAGC
CAGAAGAGCTCGGAGAGAAGTTACCAGAAGAGAGGCCTAGAGTACCAGCAACAATCAAAT
GGGTATGACGTCGAGCACCATATTCAAAGTGTTGATGGTGATTCCGCTCCAAGTTCCTGT
GCTCTAGAATCCTATTATGGTCATGGAAGGCCGCCAAGGTACCCACCACCACAAAATCCT
TTCTCTCCGACCCATACATACGCACATTGCCATTTTGGACATGCCGAAACACGCCTACCA
CACAGTTATGACCCATGGGAGTTCAATTCATATTACCAGTCCTCGTATGCTGAAAGCACA
ATACTGGACCAAGAATCACTTAGGTCAAGCTACAAGGAGCAGAAACGGGTGGTGAGAAAG
CATATCTTGCGGCCTCTGTCAGGTGCTTCCCCATTCACTATCTGCAACGGCTGTTTCAAC
CTGGTTCAAATGCCATCGGATGTCTACATATCAAAAGCAATGGTCGGCAAAATGCAATGC
GGCAAGTGCTCCAAGGTTCTGGCATTATCATTCCGTGCAGCATACAATGCAAATGCAAAG
AGTAGTGTGGATGTGGCCCAAGAGTCATACAACCTGGACGATAGCGTAGTCGCTAAAAAC
GAGGATATTGCTTCTTATTATGCTGAGTGCCTAACAGGGGGTCCGGTTAGTATCAGTGAA
GACTATGGAGCATCGCACACAAGAAGCATGCCTGCTCGAGCTGAGTCTAGTAGCCTTGCT
GCCGCACAAAGTGGCAAGAAGGTCTCTGACTCGGCGCTCCATCGGCTCATGGGGTATGAT
TCAGCTAGCCAGTTGTTACGCCATAGCAGGGTGTTTGAAGATGGGTACGAGAGCTTCGAG
TCGATGGTGCCAGTTTCCAGCAGAGTGTCCAGAAGAAAGAACAAGTGA

Peptide Sequence

PEP ID

Zm00001d052361_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:188290914:188296399:-1 gene:Zm00001d052361 transcript:Zm00001d052361_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expressed protein; protein
Sequence

MEPHSLRFVRCPKCHQLLVEYPSIPVYKCGGCGTVLRAKHRAAPAARAGSESGEHSTGSP
CSLNGSPSQSSGSICSGEQRAGSSVDRPHEATAHGSMSSAANNIDSCDGTVHERTMSAAD
SGVTHAEHPEEGKCSLADDGNIQKSGVMVKEKETHGQNAGASLDLTERVENVDTGEKASG
GKIGDIGTSQLSMTLYEKSQAAHREERPRRYEGVHVESHKALIEELERSLSFSSEDDYFS
DEAESSGLSDALRNQMGSRRFMLGGRVNDAPRSDPHGRLIEELEMSFSDAEEPLEQHAMG
SERVHGNVLDKDPQILSDKSAHPCEESLSSFESGHLKSEQTPHQESRAIGAIGNGNQGNE
RIEDNNNTADSVHGSEHIVIDDDKIADIFHEKEHDKDCQLANTESAYPSEGSTSAVDDCS
IEVQQSFQPNDLTAVDECSIEVQQSFQPNDLTADVNQEMEDDKITNDNIVPADSHEKEHE
NDNLIHAPADEDISERVGVNEELTADGTQEMEDGFMEDDNMINCVHDKDNSVLADENIAE
KVHMHEDLKTDGTQEMEEGCMEDSNMSNCIHVSDNLVFADEGIADRVHGNEETADGAGEN
EQSLMENENVNVAVAAEFIAKKIHENEHGRDQRSLEDGSAQLYEGVITPFSARYVESEQS
FQQDEPIPDATEEKEDDFMEDGNMANCIEESMAAVARFSSLPNKRNQSKLASFNKNKEQM
TYRSRGSQLRQGRSLDSEDFGSIQNFMESQMDGTSSSLSSGSPSRGDPVHRTANKFNNNC
RHERLKKMDELRDQLSRLSSQKSSERSYQKRGLEYQQQSNGYDVEHHIQSVDGDSAPSSC
ALESYYGHGRPPRYPPPQNPFSPTHTYAHCHFGHAETRLPHSYDPWEFNSYYQSSYAEST
ILDQESLRSSYKEQKRVVRKHILRPLSGASPFTICNGCFNLVQMPSDVYISKAMVGKMQC
GKCSKVLALSFRAAYNANAKSSVDVAQESYNLDDSVVAKNEDIASYYAECLTGGPVSISE
DYGASHTRSMPARAESSSLAAAQSGKKVSDSALHRLMGYDSASQLLRHSRVFEDGYESFE
SMVPVSSRVSRRKNK

Transcript Sequence

Transcript ID

Zm00001d052361_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:188290914:188296399:-1 gene:Zm00001d052361 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expressed protein; protein
Sequence

GGAGCCCGCCGCACAGCAAAGCTCCGACCTTGCGCCGCCACGTTTGTCTTGTCCCACCCA
CCACCTCCTCCACTCCCCGCCCCCGGCGCCCCTGCACGCCGTCCCATTTCTCTCGTCCCC
CCTCCTCCTCCCCTTCCCCTACCATCTCAGTGGCGGCGGGGCTAGGGCTCTCCTTCTCCG
TTCCTCCCTCAATCCTCCTCCCCTCCTCCCTCTCGCATCCAGTCAAACTCCAGCCAGCCA
AAACCAGCAGCCTCGACCAGGCCGCCGGCAGGCCGACCGATTGATCGGTGTGGATCGAGT
CGAGGGAAGGAGGCAACGGGCTACAGGACCAAGTCCAGCACCCAGGCGCAAAAACTTCCT
GAGCAGGATCATGCCTTCTTGCCCTCGGGGAAGAAGCGCCAAAGGGGAAGGAAGGATTTG
TGCCATCTGACTCCAGTGCCTGCATTCTAGACTCCCAAGCTCGAACACAGGCCAGGGAAG
GGAAGCGGTGGCCATGGAACCTCACAGCCTGCGGTTCGTCAGGTGCCCGAAATGCCACCA
GCTCCTCGTCGAGTACCCCTCCATTCCTGTCTACAAGTGTGGCGGCTGTGGCACGGTTCT
CAGAGCGAAACATCGGGCTGCCCCTGCAGCACGAGCTGGTTCAGAATCTGGGGAGCACAG
CACCGGCTCTCCGTGTAGCCTGAACGGCTCCCCTAGCCAGAGTAGCGGATCGATCTGCTC
GGGCGAACAGAGAGCTGGCTCCTCTGTTGATCGGCCTCATGAGGCCACGGCTCATGGAAG
CATGTCCTCCGCTGCCAACAACATCGACTCGTGTGACGGCACAGTCCATGAAAGAACCAT
GTCTGCAGCAGATAGTGGTGTAACCCATGCCGAGCATCCGGAGGAGGGCAAGTGCTCCTT
AGCTGATGATGGAAATATCCAGAAGTCTGGGGTTATGGTCAAAGAAAAAGAGACACATGG
ACAAAACGCTGGGGCTAGTTTGGATTTAACTGAAAGAGTTGAGAATGTTGACACTGGTGA
AAAGGCGAGCGGAGGTAAAATCGGTGATATTGGCACTAGTCAACTGAGCATGACACTGTA
TGAGAAAAGTCAGGCTGCTCACAGGGAGGAGAGGCCACGCAGGTATGAAGGCGTGCATGT
TGAGTCTCACAAAGCTCTGATCGAAGAGTTGGAGAGGTCTCTTTCGTTCAGCAGTGAGGA
TGACTACTTCTCGGACGAAGCAGAAAGCAGTGGCCTCAGTGATGCTCTGCGTAACCAAAT
GGGTAGCCGCAGGTTTATGCTAGGGGGCAGAGTGAATGATGCGCCCCGAAGCGATCCACA
TGGTCGATTGATTGAAGAACTAGAGATGTCTTTCAGCGATGCAGAAGAGCCATTGGAGCA
GCATGCTATGGGTTCAGAGAGAGTTCATGGAAATGTGCTTGACAAGGATCCACAGATCCT
GAGTGATAAAAGTGCACATCCATGTGAAGAAAGCCTCTCATCATTTGAGAGTGGACACCT
CAAATCTGAACAAACTCCTCACCAGGAAAGCAGGGCAATAGGGGCAATAGGCAATGGCAA
TCAAGGAAATGAGCGTATTGAAGATAACAATAATACTGCCGACTCTGTTCATGGGAGTGA
GCATATTGTGATTGACGATGACAAAATTGCAGATATATTCCACGAGAAAGAACATGATAA
GGATTGCCAGCTTGCAAACACAGAAAGTGCATACCCTTCTGAAGGAAGCACCTCTGCTGT
CGATGATTGCAGTATTGAAGTTCAGCAAAGTTTTCAACCAAATGACCTGACAGCAGTCGA
TGAGTGCAGTATTGAAGTTCAGCAAAGTTTTCAACCAAATGACCTGACAGCAGATGTCAA
TCAAGAAATGGAAGATGATAAGATAACCAATGATAACATTGTACCTGCAGATTCCCATGA
GAAAGAGCATGAGAATGATAATCTTATTCATGCGCCTGCAGATGAAGACATTTCAGAGAG
AGTTGGTGTAAATGAAGAGCTAACAGCAGATGGCACTCAAGAAATGGAAGATGGCTTCAT
GGAAGATGACAACATGATCAATTGTGTGCATGACAAAGATAATTCTGTGCTTGCAGATGA
AAACATTGCAGAGAAAGTTCATATGCATGAAGATTTAAAAACTGATGGCACTCAGGAAAT
GGAAGAGGGTTGTATGGAAGACAGCAACATGAGCAATTGTATTCATGTCAGTGATAATCT
TGTATTTGCAGATGAAGGCATTGCAGATAGAGTTCATGGAAATGAAGAGACAGCTGATGG
CGCTGGAGAAAATGAACAGAGCCTAATGGAAAATGAAAATGTGAATGTTGCTGTTGCAGC
TGAGTTCATTGCGAAGAAGATTCACGAGAATGAGCATGGTAGGGATCAGCGGTCCCTGGA
GGACGGAAGTGCACAGCTGTATGAAGGAGTCATCACTCCATTCAGTGCCAGATACGTTGA
ATCTGAACAAAGTTTTCAACAAGATGAGCCAATACCTGATGCCACTGAAGAAAAGGAAGA
TGATTTTATGGAAGATGGAAATATGGCCAACTGCATTGAAGAAAGCATGGCAGCTGTTGC
TAGGTTCTCAAGCTTGCCAAATAAGAGGAATCAGTCCAAGTTAGCTAGCTTTAATAAGAA
CAAAGAACAAATGACCTACAGATCTAGAGGTAGCCAACTTCGTCAGGGACGTTCACTTGA
TTCTGAAGATTTTGGTTCAATTCAAAACTTCATGGAGTCACAAATGGATGGCACCTCAAG
TTCTCTCTCAAGCGGGTCTCCCAGTCGAGGCGATCCGGTGCACAGAACAGCAAACAAGTT
CAATAATAACTGTAGACACGAGCGCCTCAAAAAGATGGATGAACTAAGAGATCAGCTAAG
TAGGCTTTCGAGCCAGAAGAGCTCGGAGAGAAGTTACCAGAAGAGAGGCCTAGAGTACCA
GCAACAATCAAATGGGTATGACGTCGAGCACCATATTCAAAGTGTTGATGGTGATTCCGC
TCCAAGTTCCTGTGCTCTAGAATCCTATTATGGTCATGGAAGGCCGCCAAGGTACCCACC
ACCACAAAATCCTTTCTCTCCGACCCATACATACGCACATTGCCATTTTGGACATGCCGA
AACACGCCTACCACACAGTTATGACCCATGGGAGTTCAATTCATATTACCAGTCCTCGTA
TGCTGAAAGCACAATACTGGACCAAGAATCACTTAGGTCAAGCTACAAGGAGCAGAAACG
GGTGGTGAGAAAGCATATCTTGCGGCCTCTGTCAGGTGCTTCCCCATTCACTATCTGCAA
CGGCTGTTTCAACCTGGTTCAAATGCCATCGGATGTCTACATATCAAAAGCAATGGTCGG
CAAAATGCAATGCGGCAAGTGCTCCAAGGTTCTGGCATTATCATTCCGTGCAGCATACAA
TGCAAATGCAAAGAGTAGTGTGGATGTGGCCCAAGAGTCATACAACCTGGACGATAGCGT
AGTCGCTAAAAACGAGGATATTGCTTCTTATTATGCTGAGTGCCTAACAGGGGGTCCGGT
TAGTATCAGTGAAGACTATGGAGCATCGCACACAAGAAGCATGCCTGCTCGAGCTGAGTC
TAGTAGCCTTGCTGCCGCACAAAGTGGCAAGAAGGTCTCTGACTCGGCGCTCCATCGGCT
CATGGGGTATGATTCAGCTAGCCAGTTGTTACGCCATAGCAGGGTGTTTGAAGATGGGTA
CGAGAGCTTCGAGTCGATGGTGCCAGTTTCCAGCAGAGTGTCCAGAAGAAAGAACAAGTG
AGGTTCTACTTCGAAGCGTGAAACCTTTTGCTCACCTTGCGAGTAATCGTACAAAGGAGA
AACAGTTTTGGAGTGCGGTCCAACCGTGCCGCAGAAGCCCGTCCTATGATCCGAAGGCAA
GTTGGCATCTTGCCATCGAATAGTTCCATTATTTTCTCAAATAAGTTGGGATGTTTGAAG
CGATTTTAGTTTTTTTTTGGTCATATTCTTTAGGTGTGGTGTATAGATATATTGCTTATT
CTTGTTGTAAATTTGTTCATATCTGGTACTGGTATAATGACAACTATTAATACCACACAA
TTGGCAATCTCGTGGTCGGATTTGATTGTATAGTCCGGATACTGGTAGGTTCAGGTCTTT
CACAACTCCCTGCATGTTGAATTAAGGCTCAGAAATGCGAGCTGTAGACATTGTATTGAC
ACTGACATAGTTCAAGAAAAATGTCCAGGGCCGACAGTGGCATGCTAACAGATCGAAGGC
AGGATGCACATTATCTGTGCTGGCTCATGTGTGGAGGTTAGGTGGACTGTCCAACCAACC
ACTAAAAATTTTGCTGGCGCATGTGGCTTGTCTGTAAAGACATGCACGCTGTGTCTCATG
ATCGCAGACGCAGCAGACAAGGCTGCTTCTGTGAATCTGATTGCAACGTCAAAGGCAGAG
GCTGGCTGGCTGGCTGTGGACAGGCTAGTACAGCATCCCTGATGGTGGTGTGATACTATA
ACCATCCCCAGTGCCATGGAAAAAAGGTAGGTGATGCAATGATGACATCCTTGTGATGAG
CTTGTCCTGCAACATGACAATGTGGGAGCATAATAACAAGCATTCTCTATTCCTAGGATC
TGGTTTGTTCATGTGGATGTGGCTTCTTTCCAGTTTGTTGGCCCTCTGGCCAGTGGTTTA
ATTTGGTAGAGAGTCCAGTGGATGCAGTCTTGTGCATGGGGCAAATATGCAATGCAATGC
AAGCCTGGCAATGTAAAGGAGCCTGGCGGTGGCGGTGGTGTGGTGCCTTCTAGAGTTCTA
GTACTGAGAAACAGAATGATGGAGTATAGCTATTAAGCCTAATGATGAAGAGAACATGGG
GCTGTTGTTCAACGGCCTGT