Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052344_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:4:187581688:187595662:-1 gene:Zm00001d052344 gene_biotype:protein_coding transcript_biotype:protein_coding description:PAP/OAS1 substrate-binding domain superfamily
Sequence

ATGGTGGACATCAGCGAGTGCTCGCCGGTGCCCGAGTCCGTGCCGGCGCACCCGGACCCC
GCGTCCGTTTCTCCGGACGCCTGGCGGCGCTTCGAGACCGCCGCGCTCGCCGTGGTGAAC
AAGATCCAGCCCACCGCCGCCTCCGAACACCTCCGCGCCGCCGTCGTCGACTACGTCCAG
CGCCTCTTCTGGTTCCAAGCCCGGTATCAGGTCTTTCCATTTGGATCTGTTCCATTGAAA
ACATATCTTCCAGATGGAGATATTGACCTGACATTATTTGGCCCTGCTATTTCTGATGAG
AATCTAGCAAATGAAGTATGCACTATTCTAAAATCGGAAGAGCGAAGGAAAGATTCTGAA
TTTGAGGTTAAAGATGTCCAGTATGTCCCTGCTGAGGTCAAGCTGGTTAAATGTTTGGTA
CAAAACATTGTTGTAGACATCTCAGTTAATCAGATTGGTGGGCTGTGCACACTATGTTTT
CTTGAGAAGGTTGATCAACACTTTGGAAAAGATCACCTATTTAAGAAAAGCATAATTCTT
ATAAAAGACTGGTGTTACTATGAAAGCCGGATTCTTGGTGCTCACCACGGCCTAATTTCC
ACGTATGCCTTGGAGACTCTAGTTCTATACATTTTCCATATCTTCCACAAGTCTTTGGAT
GGTCCATTGGCTGTTCTCTATAGGTTTCTAGACTATTATAGTAAATTTGATTGGGATAAT
AAGGGGATCAGCTTATTTGGACCTGTTTCCTTATCTTCACTACCTGAGCTAGTTACTGAC
CCACCAGATATCCAAGATGATGATTTTCTTCAACGGGAGGAATTTCTAAAAGAATGCATA
GAATCTTTTAGTGTTCTCCCTAGAAACTCTGAGACGAATCCTAGACTATTCTCACGGAGA
TTTTTAAATATTGTTGATCCACTAAAGCAGAGTAATAATCTTGGACGCAGTGTCAGTAAA
GGAAACTTTTACCGGATACGCAGCGCATTTGATTTTGGTGCTCGTAAGCTTGGCAAGATT
CTTCAAGTGCCTTCTTGTCTCACTGTTGGTGAAGTCAATCAGTTTTTCAGGAACACTCTA
AAGAGAAACCGTACTGGTTTAAGGCCAGATGTTTTGGTTGTCTCTTCTGACCTTGTTACA
AATGATCCTGTATCATCAGACTTAGATGTGGAAAGAGTCAACAATGTTGCGCCTAACAAT
TCCTGTGATGTTCTGTCTAATCAGCTCAGTAACATCAACATTTCAGATTCCAATAATCAT
GGCTCAATAAAGCAAAAAGAATGTAACTCTATGGCTGATCACAAGGAGACAAAATCTGTT
TCTTTGGGTTTGCTAGATAGTGATGCCACAAATCATGCAACTACCGATTCATTAAGTATA
AGGGGTGGTGGCAACTTCTCTGAAGCTTCACCAGTACCTAGTGAAACCAGTACCTTGCAA
TCAGAAACAGGCAAGAAAGTTGATGTTAGAAATGACACAACCCCATCATACTATGGGGTT
TCAGCAAAGCAGTTTACAGGCAGATCTCACCACTATATTGAAGATACTAAGCATAATGCT
TACCCCTATTCTACTGGTTTAGTTGATGGTCTGGGCACATCTAATTCAGTTTTAACATCG
GATACACAACCTGGAGGTAACAACAATGACACAGTGCCAAATCTCACTGGAGATTTCGAT
ACAAATTTGCATAATCTTCTGTATGCACGGGGGTTCCATCAGGACAATCCTATGACTCAA
TTATACTATCCAATGCCCATGCCACCACCCCTGCAATATCAGAACATGCACCCATCAAAT
GGCCATGGCAGAAAAAATCCGTATGGATATGCTGGTAGGAATGGGGTTGTCCCTGGTCAT
GTTTATCCACCTAGCTATTTTGTGTATAGGCCATTGTATCAAGCAGATGATCATATGACT
TTGAGGACTCGTGGAACAGGCACCTACTTTCCTGACCCAAATTTGCGCAAGGACCGACCA
CCTACTGGACGTGGGGAGAGAGGAAGGAATCATTCCCATCAGAATAATTATCATAAGTTT
CACCACCACACCCGACCGGGATCCTTTGAATGTACCAATGCATTCCCCATCTTCCCATGT
CCGAAAGGATAA

Peptide Sequence

PEP ID

Zm00001d052344_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:4:187581688:187595662:-1 gene:Zm00001d052344 transcript:Zm00001d052344_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:PAP/OAS1 substrate-binding domain superfamily
Sequence

MVDISECSPVPESVPAHPDPASVSPDAWRRFETAALAVVNKIQPTAASEHLRAAVVDYVQ
RLFWFQARYQVFPFGSVPLKTYLPDGDIDLTLFGPAISDENLANEVCTILKSEERRKDSE
FEVKDVQYVPAEVKLVKCLVQNIVVDISVNQIGGLCTLCFLEKVDQHFGKDHLFKKSIIL
IKDWCYYESRILGAHHGLISTYALETLVLYIFHIFHKSLDGPLAVLYRFLDYYSKFDWDN
KGISLFGPVSLSSLPELVTDPPDIQDDDFLQREEFLKECIESFSVLPRNSETNPRLFSRR
FLNIVDPLKQSNNLGRSVSKGNFYRIRSAFDFGARKLGKILQVPSCLTVGEVNQFFRNTL
KRNRTGLRPDVLVVSSDLVTNDPVSSDLDVERVNNVAPNNSCDVLSNQLSNINISDSNNH
GSIKQKECNSMADHKETKSVSLGLLDSDATNHATTDSLSIRGGGNFSEASPVPSETSTLQ
SETGKKVDVRNDTTPSYYGVSAKQFTGRSHHYIEDTKHNAYPYSTGLVDGLGTSNSVLTS
DTQPGGNNNDTVPNLTGDFDTNLHNLLYARGFHQDNPMTQLYYPMPMPPPLQYQNMHPSN
GHGRKNPYGYAGRNGVVPGHVYPPSYFVYRPLYQADDHMTLRTRGTGTYFPDPNLRKDRP
PTGRGERGRNHSHQNNYHKFHHHTRPGSFECTNAFPIFPCPKG

Transcript Sequence

Transcript ID

Zm00001d052344_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:187581688:187595662:-1 gene:Zm00001d052344 gene_biotype:protein_coding transcript_biotype:protein_coding description:PAP/OAS1 substrate-binding domain superfamily
Sequence

CTGCGTCGCCCGCCTCCTCCAGCGGCTGCTTGGCGGCGTCTCCAGCTCTGGGGAAGAAGC
AAGCGGCTAGCGGCTCTCTCCCGGCGCCCATGGTGGACATCAGCGAGTGCTCGCCGGTGC
CCGAGTCCGTGCCGGCGCACCCGGACCCCGCGTCCGTTTCTCCGGACGCCTGGCGGCGCT
TCGAGACCGCCGCGCTCGCCGTGGTGAACAAGATCCAGCCCACCGCCGCCTCCGAACACC
TCCGCGCCGCCGTCGTCGACTACGTCCAGCGCCTCTTCTGGTTCCAAGCCCGGTATCAGG
TCTTTCCATTTGGATCTGTTCCATTGAAAACATATCTTCCAGATGGAGATATTGACCTGA
CATTATTTGGCCCTGCTATTTCTGATGAGAATCTAGCAAATGAAGTATGCACTATTCTAA
AATCGGAAGAGCGAAGGAAAGATTCTGAATTTGAGGTTAAAGATGTCCAGTATGTCCCTG
CTGAGGTCAAGCTGGTTAAATGTTTGGTACAAAACATTGTTGTAGACATCTCAGTTAATC
AGATTGGTGGGCTGTGCACACTATGTTTTCTTGAGAAGGTTGATCAACACTTTGGAAAAG
ATCACCTATTTAAGAAAAGCATAATTCTTATAAAAGACTGGTGTTACTATGAAAGCCGGA
TTCTTGGTGCTCACCACGGCCTAATTTCCACGTATGCCTTGGAGACTCTAGTTCTATACA
TTTTCCATATCTTCCACAAGTCTTTGGATGGTCCATTGGCTGTTCTCTATAGGTTTCTAG
ACTATTATAGTAAATTTGATTGGGATAATAAGGGGATCAGCTTATTTGGACCTGTTTCCT
TATCTTCACTACCTGAGCTAGTTACTGACCCACCAGATATCCAAGATGATGATTTTCTTC
AACGGGAGGAATTTCTAAAAGAATGCATAGAATCTTTTAGTGTTCTCCCTAGAAACTCTG
AGACGAATCCTAGACTATTCTCACGGAGATTTTTAAATATTGTTGATCCACTAAAGCAGA
GTAATAATCTTGGACGCAGTGTCAGTAAAGGAAACTTTTACCGGATACGCAGCGCATTTG
ATTTTGGTGCTCGTAAGCTTGGCAAGATTCTTCAAGTGCCTTCTTGTCTCACTGTTGGTG
AAGTCAATCAGTTTTTCAGGAACACTCTAAAGAGAAACCGTACTGGTTTAAGGCCAGATG
TTTTGGTTGTCTCTTCTGACCTTGTTACAAATGATCCTGTATCATCAGACTTAGATGTGG
AAAGAGTCAACAATGTTGCGCCTAACAATTCCTGTGATGTTCTGTCTAATCAGCTCAGTA
ACATCAACATTTCAGATTCCAATAATCATGGCTCAATAAAGCAAAAAGAATGTAACTCTA
TGGCTGATCACAAGGAGACAAAATCTGTTTCTTTGGGTTTGCTAGATAGTGATGCCACAA
ATCATGCAACTACCGATTCATTAAGTATAAGGGGTGGTGGCAACTTCTCTGAAGCTTCAC
CAGTACCTAGTGAAACCAGTACCTTGCAATCAGAAACAGGCAAGAAAGTTGATGTTAGAA
ATGACACAACCCCATCATACTATGGGGTTTCAGCAAAGCAGTTTACAGGCAGATCTCACC
ACTATATTGAAGATACTAAGCATAATGCTTACCCCTATTCTACTGGTTTAGTTGATGGTC
TGGGCACATCTAATTCAGTTTTAACATCGGATACACAACCTGGAGGTAACAACAATGACA
CAGTGCCAAATCTCACTGGAGATTTCGATACAAATTTGCATAATCTTCTGTATGCACGGG
GGTTCCATCAGGACAATCCTATGACTCAATTATACTATCCAATGCCCATGCCACCACCCC
TGCAATATCAGAACATGCACCCATCAAATGGCCATGGCAGAAAAAATCCGTATGGATATG
CTGGTAGGAATGGGGTTGTCCCTGGTCATGTTTATCCACCTAGCTATTTTGTGTATAGGC
CATTGTATCAAGCAGATGATCATATGACTTTGAGGACTCGTGGAACAGGCACCTACTTTC
CTGACCCAAATTTGCGCAAGGACCGACCACCTACTGGACGTGGGGAGAGAGGAAGGAATC
ATTCCCATCAGAATAATTATCATAAGTTTCACCACCACACCCGACCGGGATCCTTTGAAT
GTACCAATGCATTCCCCATCTTCCCATGTCCGAAAGGATAATTTTCATGGCAATGGTTTT
ATGCTCCCGCAAGACAGTAAACTTGAGTTTGGGACCTTGGGGGCATTGCCTTCGGAAGTT
GCCTCTAAAGACCATGCCAACAGATCAGGTTCTGTCTCCAACAATCAAGCTTCTGGGCCT
GTGAGCCCCATGTCTGTGGCCAAAAATACTGGAATGGGTTCCAATGGAATGAGGAATGTT
CAGCCATACCGTCTCAAGGACAGTGGTGACTTCCCGCCACTGTCCAGTTGATGTCGATTC
CGTGTGTATGAGAGGCAGCAGGATAATGATGAGTGGTGTGCTTCCGACACGAATGGGACA
TCGTGTAATGGCGCCGAGTTCTTTGGCAGAAGCATACGCCATGATGTACATCCTGTTTTT
TTTTTCCTTCCCTTTTCTCTAGTTGCCATTAAGCACCACCACTGCAACGCAGCCTGTGCT
TTCTTGCGACAAGAGAGAAGGCAGAAGTAAAAAGAGATGAAAAACGAGAGAAGGAAAAAT
GTAAGGGAAAAAAATGAAAGCAAAAGGGTGGAGATACTTTTAGGGGTATAGTCCCGTTGT
TTCAGTTCTACAGCTCAAGAGGAACAGATGGTGCTGGTGAAAGATAGATCTAGCTAGCTA
GCTAGTTTTGTTGTTTTGATTGACCTCAGGGTGATTGGAGAACTGGATTTTGTCGTCCAT
GTCCACGTGTAACGAGGATAGAGTTGTAGCTCCCTGTTTGCATTTAGAGGGGGGGAGGCC
TTGGTGTTGAAAGGCCCCAAAGTTTGAAGCTACTTTAGCTGCTTGAAAATGGATTAGGTA
CACAGAATGTGTTAAATCTGCTGTCCAAACGAAAATGCGCTTGCTGTGTGTTTCCGTTTA
TGCATAATCTGTAACCATTGTTTCAG