Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052314_T051
CDS Infomation

cds chromosome:B73_RefGen_v4:4:186823505:186828360:-1 gene:Zm00001d052314 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin-activating enzyme E1 2
Sequence

ATGAAGCGCCTTTTCGGCTCTAACGTCCTCGTCTCTGGACTCCAGGGACTAGGCGCTGAG
ATCGCAAAAAACCTTGTCCTCGCGGGTGTCAAGTCTGTAACCTTGCATGATGATGGCAAA
GTCGAGCTATGGGACTTGTCAAGCAATTTCTTCCTCTCAGAGAAGGATATTGGGCAAAAC
CGTGCTCAAGCTTGTGTTCCAAAGCTACAGGAGCTTAACAATGCTGTCATCATCTCTACC
ATAACTGGTGATTTAACCAAGGAGCAGCTTTCTAACTTTCAGGCTGTGGTCTTCACTGAT
ATCAGCATAGAAAAAGCAGTTGAGTTTGATGATTACTGTCATAGCCACCAGCCACCAATT
GCTTTCATTAAGTCAGAAGTTTGTGGCCTTTTTGGCAGTGTTTTCTGTGATTTTGGTCCT
GCGTTTACTGTTTTGGATGTTGATGGTGAGGAACCACATACAGGAATTGTGGCATCAATC
AGCAATGACAATCCAGCACTTATTTCTTGTGTGGATGATGAGCGTCTGGAGTTCCAGGAT
GGTGATCTAGTTGTTTTCTCTGAAGTGCATGGAATGACCGAACTTAATGATGGAAAACCA
AGAAAGATTAAGAATGCAAGACCTTATTCTTTTACTCTAGAAGAAGACACCACCTCATAT
GGCACTTATATTAGAGGTGGTATTGTCACTCAGGTGAAGCCACCGAAGGTTCTTAAATTC
AAAACCTTGAAGGAGGCAATCAAGGAGCCAGGAGAATTTCTCATGAGTGATTTCTCCAAG
TTCGACCGCCCACCTCTTTTGCATTTGGCCTTCCAAGCTTTGGACAAGTTTAGGACTGAA
TTGACACGATTCCCTATTGCTGGGTCAGCTGATGATGCACAGAAGCTGATAGATCTTGCT
ATTGGTATTAATGAAACTCTGGGTGAGAGTAAGCTTGAAGAAATTGACAAGAAGCTCTTG
CAGCATTTCGCAAGTGGTTCCAGGGCTGTTTTGAATCCTATGTCTGCAATGTTTGGTGGT
ATTGTAGGTCAGGAGGTTGTTAAAGCATGCTCAGGGAAATTCCATCCACTTTACCAGTTC
TTCTACTTCGATTCTGTGGAATCTCTGCCAGTTGAACCGTTGGAGCCTAGTGATCTGAAG
CCAGAGAACAGTAGATATGATGCACAAATTAGTGTCTTTGGGGCTCAGCTTCAAAAGAAA
CTGGAGCAGTCAAAAATCTTCATGGTTGGTTCTGGGGCTCTTGGATGTGAATTCTTGAAG
AACCTTGCGTTAATGGGTATTTCTTGCAGTCAAAACGGGAAGCTGACTGTGACAGATGAT
GATGTTATAGAGAAAAGCAATCTCAGTCGCCAGTTTCTCTTCCGTGACTGGAACATTGGA
CAGCCCAAGTCCACAGTTGCTGCAACTGCTGCTATGACAATTAATCCCGAGCTTCATGTG
GAGGCCCTTCAGAACAGAGCAAGCCCTGATACTGAAAATGTGTTTAATGATGCCTTTTGG
GAGAGCTTAGATGCTGTTGTTAATGCATTGGACAATGTCACGGCAAGGATGTACATTGAC
TCCAGATGTGTATATTTCCAGAAGCCACTTCTTGAATCAGGTACTCTGGGTGCCAAGTGC
AACACACAGATGGTCATTCCTCACCTAACAGAGAACTATGGGGCATCCAGAGATCCACCA
GAAAAGCAGGCACCTATGTGCACTGTACATTCGTTTCCTCACAACATTGATCACTGCCTG
ACATGGGCTAGATCTGAGTTTGAAGGTCTACTTGAGAAGACTCCCACTGAAGTAAACGCT
TTCCTGTCGAACCCTGGTGGATATGCAACGGCAGCAAGAACTGCTGGTGATGCACAGGCT
AGGGACCAACTTGAGCGAGTTATTGAATGCCTTGAGACAGACAAGTGTGAGACATTCCAA
GATTGCATTACCTGGGCCCGGCTGAAGTTTGAGGATTATTTCTCCAACCGTGTAAAGCAG
CTGACATTCACTTTTCCTGAAGATGCAATGACTAGCTCTGGTGCTCCTTTCTGGTCCGCT
CCTAAGCGGTTCCCGCGACCTCTGGAGTTCTCATCTTCTGACTCAAGTCATCTTAGCTTC
TTGTTGGCTGCTTCTATATTAAGGGCAGAAACATTTGGAATACCCATACCTGATTGGGCG
AAAAACCCAAAGAAACTAGCTGAAGCTGTGGACAAGGTCATTGTTCCGGATTTCCATCCA
AAGCAGGGTGTTAAGATAGAGATAGATGAGAAGGCTACTAGCCTATCCTCTGCATCTGTT
GATGATGCTGCTGTCATTGAAGAGCTTATT

Peptide Sequence

PEP ID

Zm00001d052314_P051
PEP Infomation

pep chromosome:B73_RefGen_v4:4:186823505:186828360:-1 gene:Zm00001d052314 transcript:Zm00001d052314_T051 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin-activating enzyme E1 2
Sequence

MKRLFGSNVLVSGLQGLGAEIAKNLVLAGVKSVTLHDDGKVELWDLSSNFFLSEKDIGQN
RAQACVPKLQELNNAVIISTITGDLTKEQLSNFQAVVFTDISIEKAVEFDDYCHSHQPPI
AFIKSEVCGLFGSVFCDFGPAFTVLDVDGEEPHTGIVASISNDNPALISCVDDERLEFQD
GDLVVFSEVHGMTELNDGKPRKIKNARPYSFTLEEDTTSYGTYIRGGIVTQVKPPKVLKF
KTLKEAIKEPGEFLMSDFSKFDRPPLLHLAFQALDKFRTELTRFPIAGSADDAQKLIDLA
IGINETLGESKLEEIDKKLLQHFASGSRAVLNPMSAMFGGIVGQEVVKACSGKFHPLYQF
FYFDSVESLPVEPLEPSDLKPENSRYDAQISVFGAQLQKKLEQSKIFMVGSGALGCEFLK
NLALMGISCSQNGKLTVTDDDVIEKSNLSRQFLFRDWNIGQPKSTVAATAAMTINPELHV
EALQNRASPDTENVFNDAFWESLDAVVNALDNVTARMYIDSRCVYFQKPLLESGTLGAKC
NTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPTEVNA
FLSNPGGYATAARTAGDAQARDQLERVIECLETDKCETFQDCITWARLKFEDYFSNRVKQ
LTFTFPEDAMTSSGAPFWSAPKRFPRPLEFSSSDSSHLSFLLAASILRAETFGIPIPDWA
KNPKKLAEAVDKVIVPDFHPKQGVKIEIDEKATSLSSASVDDAAVIEELI

Transcript Sequence

Transcript ID

Zm00001d052314_T051
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:186823505:186828360:-1 gene:Zm00001d052314 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin-activating enzyme E1 2
Sequence

GGGCGCGAGACTATGAAGCGCCTTTTCGGCTCTAACGTCCTCGTCTCTGGACTCCAGGGA
CTAGGCGCTGAGATCGCAAAAAACCTTGTCCTCGCGGGTGTCAAGTCTGTAACCTTGCAT
GATGATGGCAAAGTCGAGCTATGGGACTTGTCAAGCAATTTCTTCCTCTCAGAGAAGGAT
ATTGGGCAAAACCGTGCTCAAGCTTGTGTTCCAAAGCTACAGGAGCTTAACAATGCTGTC
ATCATCTCTACCATAACTGGTGATTTAACCAAGGAGCAGCTTTCTAACTTTCAGGCTGTG
GTCTTCACTGATATCAGCATAGAAAAAGCAGTTGAGTTTGATGATTACTGTCATAGCCAC
CAGCCACCAATTGCTTTCATTAAGTCAGAAGTTTGTGGCCTTTTTGGCAGTGTTTTCTGT
GATTTTGGTCCTGCGTTTACTGTTTTGGATGTTGATGGTGAGGAACCACATACAGGAATT
GTGGCATCAATCAGCAATGACAATCCAGCACTTATTTCTTGTGTGGATGATGAGCGTCTG
GAGTTCCAGGATGGTGATCTAGTTGTTTTCTCTGAAGTGCATGGAATGACCGAACTTAAT
GATGGAAAACCAAGAAAGATTAAGAATGCAAGACCTTATTCTTTTACTCTAGAAGAAGAC
ACCACCTCATATGGCACTTATATTAGAGGTGGTATTGTCACTCAGGTGAAGCCACCGAAG
GTTCTTAAATTCAAAACCTTGAAGGAGGCAATCAAGGAGCCAGGAGAATTTCTCATGAGT
GATTTCTCCAAGTTCGACCGCCCACCTCTTTTGCATTTGGCCTTCCAAGCTTTGGACAAG
TTTAGGACTGAATTGACACGATTCCCTATTGCTGGGTCAGCTGATGATGCACAGAAGCTG
ATAGATCTTGCTATTGGTATTAATGAAACTCTGGGTGAGAGTAAGCTTGAAGAAATTGAC
AAGAAGCTCTTGCAGCATTTCGCAAGTGGTTCCAGGGCTGTTTTGAATCCTATGTCTGCA
ATGTTTGGTGGTATTGTAGGTCAGGAGGTTGTTAAAGCATGCTCAGGGAAATTCCATCCA
CTTTACCAGTTCTTCTACTTCGATTCTGTGGAATCTCTGCCAGTTGAACCGTTGGAGCCT
AGTGATCTGAAGCCAGAGAACAGTAGATATGATGCACAAATTAGTGTCTTTGGGGCTCAG
CTTCAAAAGAAACTGGAGCAGTCAAAAATCTTCATGGTTGGTTCTGGGGCTCTTGGATGT
GAATTCTTGAAGAACCTTGCGTTAATGGGTATTTCTTGCAGTCAAAACGGGAAGCTGACT
GTGACAGATGATGATGTTATAGAGAAAAGCAATCTCAGTCGCCAGTTTCTCTTCCGTGAC
TGGAACATTGGACAGCCCAAGTCCACAGTTGCTGCAACTGCTGCTATGACAATTAATCCC
GAGCTTCATGTGGAGGCCCTTCAGAACAGAGCAAGCCCTGATACTGAAAATGTGTTTAAT
GATGCCTTTTGGGAGAGCTTAGATGCTGTTGTTAATGCATTGGACAATGTCACGGCAAGG
ATGTACATTGACTCCAGATGTGTATATTTCCAGAAGCCACTTCTTGAATCAGGTACTCTG
GGTGCCAAGTGCAACACACAGATGGTCATTCCTCACCTAACAGAGAACTATGGGGCATCC
AGAGATCCACCAGAAAAGCAGGCACCTATGTGCACTGTACATTCGTTTCCTCACAACATT
GATCACTGCCTGACATGGGCTAGATCTGAGTTTGAAGGTCTACTTGAGAAGACTCCCACT
GAAGTAAACGCTTTCCTGTCGAACCCTGGTGGATATGCAACGGCAGCAAGAACTGCTGGT
GATGCACAGGCTAGGGACCAACTTGAGCGAGTTATTGAATGCCTTGAGACAGACAAGTGT
GAGACATTCCAAGATTGCATTACCTGGGCCCGGCTGAAGTTTGAGGATTATTTCTCCAAC
CGTGTAAAGCAGCTGACATTCACTTTTCCTGAAGATGCAATGACTAGCTCTGGTGCTCCT
TTCTGGTCCGCTCCTAAGCGGTTCCCGCGACCTCTGGAGTTCTCATCTTCTGACTCAAGT
CATCTTAGCTTCTTGTTGGCTGCTTCTATATTAAGGGCAGAAACATTTGGAATACCCATA
CCTGATTGGGCGAAAAACCCAAAGAAACTAGCTGAAGCTGTGGACAAGGTCATTGTTCCG
GATTTCCATCCAAAGCAGGGTGTTAAGATAGAGATAGATGAGAAGGCTACTAGCCTATCC
TCTGCATCTGTTGATGATGCTGCTGTCATTGAAGAGCTTATTGC