Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052282_T095
CDS Infomation

cds chromosome:B73_RefGen_v4:4:185936411:185959107:1 gene:Zm00001d052282 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nuclear-pore anchor
Sequence

ATGGAGAAGAGTTATGTCATTAAGTGTGAAGAAGCTGCCAATGCAATTGAATCTAAAGAG
AAGCACATCACTTCTCTCATGAATGAAATTTCTGTTTTAAGAACAGAAGTTTCTCAGAAA
CTACCACAGTTAGAAAAATTGGAAATTGAATTGGCTTTGTCAAAGAGTTCACTTGATGAG
CAGTATAAGCGCTGGCGAACTGCCCAAGATAATTATGAACGCCAGGTTATTCTGCAATCT
GAGACGATACAGGAGTTGACAAATACTTCTAAGCAGCTATCTTCGTTGCAGCATGAAATC
ACTGTACTTCGCCAGACTGCAGATGCACTGAAAAATGAAAATGAATGTCTAAGATCTTCT
GCTGAACAAGAAAAGATAGGCTTATTGAAAGAGAAGGACGATGCCCTGCAGAAGTATAAT
GAGCTTAATGATCAGAATAGAATTCTACACAATCAGTTAGAAGCTTTACACATTCGGTTA
GCCGAGAAAGAACGGAATATTGCTGGGCTTTCATCACATCGTACTGATAATTCACATGCA
GAAGATGATCTACAAAGTGTCATCAGTTATCTGCGCAGATCGAAAGAAATAGCCGAAACA
GAGATATCATTGCTTAAACAGGAGAAGTCTCGGCTTCAGATAGAACTGGAAAGTTCTTTA
AAGTCTGCCAAGGAGGCACAGGACTTGTTGCGAAGTCAAGCTGATAGTGCCAGGGCATTG
ATGTTCAAGGATGAAGAGTTCAAGTCACTGCAGATTCAGGTCAGAGAAATTAACTTGCTT
CGTGAAAGCAACATACAACTTAGGGAGGAGAACAGGCACAATTTTGAAGAATGCCAGAAA
TTCCGTGAAGAAGCTCAAAAGGCTAAAATGGAATCTGAGAGGTTGCAGAACCTTCTACTG
GAGAAGGAGGTAGACGCTGAAATGTGCAAAAGAGAACTGGAAATGCAGAAGGCAGAAATA
GCTAATCTCAACCAAAGTATTTCTGAGCTGATTGAAAATAGCAAAGGCATTGATTTGAAC
ACTTATGAAGCCATGAAGAATGAACTTCAAAATATCAAATCAACCTTGAGAGAGAATTCT
ATGGAGCTTGAAAGTGCAAAGATACTGCTTTCTGAGAAAGAAGTTGCCATAAAAATTTTG
GAGGATAAGCTTTCATTATGTCAATCTGAATTGGATTCCAAGGAAAAGAAGCTGAATGAT
GTAGAGGCGTCCCTTAAATCTGAGATTGACAAGCATAAGAAGATTAATTTAAACTTAAAG
AGAAAGCATGACAATTTGATGAAGGAGAAGGGAGAGATTGCTAAAGAAAATCAAAGCCTT
GTAAAGCAGATGGAGGATCTTAAATCAACTCAGAAGACAACATCTGAAACAACACTTGAG
CAGGCTATTAAAGAAAAGGATTTCAGGATACAGACATTAGAAAGAACTCTGGAAAAGGAA
AGAGATGATAACAAGAAAGAGAAGGCAAAGAGTAGGAGGAATGAGAACACAATCTTTGGT
GCACTTCAGAAGGTGCAACAGGACAAGAAACAAGTAGAGGAGTCTATAGATAAGCATAAG
CAGGCTGTGAGAGAGTTGATTGAGAATTATCCTGGATTATCATCTGAAGTGCCACCTATC
TCTGCACTAGAAGAGCAACTTCTTTCATACTTCCGTGCAGCTAAAGATATGGAGGAATCT
TCTAGTCCCTTCCGTGATGGTGCAGCAACTCAAACTCCAGTTGTTGAAACTGCCCCTGTG
GATGCACCTACTTCAGCTGGAGTTGCAGGACGTCCAGTAGATACTTCGTCAAGGCCAGCT
AAAGCTAAAATGACGGAAGAAAGAGCAGTTCCCAAACCAAGCAGTGAAGTACGTAGGCCT
GGAGGAAGAAGACCCCTTGTTCGTCCTACTCTTGAACGAACTGAAGAACCTCATGCTGAT
ACAGATATATCAGCTGTTGATGCCTCCACAGTTCAGGACAAAGGGGGGCCACCAGCAGAG
CAAGAAACTTCTGGAATTTTACCTGTGTTACAGCCTTTGAGTCGTAAACGGCTTATCACA
TCTTCACAGACGGTAGACAGTGCCTCGCAGGGTGAGGCTAATGATGTCAATCCTCCATCT
AAGAAGCCCAAGGAGGAAGAATCTTCACAAGGGACTAGTGAACTCAAAAGTGGTCAACCA
CCTCTTGGGGATGTAGCGGCACAGGTTAATGTGCTTCCAGCCACTGATGACCTAGATGGA
CAACAGCCTACAGAAGAGATCGATACTGATCAGGCACCTGAGCCAATGGTAGAGGTTGAG
GCAACAAGGGAAGAGGATGGGGGTGATAAAGATGACTCTGGAGATGCATCAACGGACATC
AAAGGCCAGGATGCTGATGCTAATATTGACGCAAATGCAATTCCTTTAGAAGAAGAGCAT
GTAGTGGCAAAGTCAGAGGCAATAATTGAATCATTTGATGATGACCGGAAAACAGAAGAT
TCGAAGGAAGATGCTCAGCGTACTACTGCAACTGATGTTGATGATGACATGGAGGAGGGA
GAGTTGGCAGAGGAACCTGAAGACAAGAGTGACGTTGATATGTCAGAGATCGAGGGTGAG
GCTACAGCCGAACGTGCTGCTGTGGAACCGGACCAAAGTCCTATAACACAACCTGGTGCA
GCTGATGCCTCACCAAGCAGAACTGCAGATGCATCTCCTGCTCGTGAACCTTCCCCTAGT
CCGGTCCAAGCTGGTGCATCTTCTCGACCCCAGAATACTAGCACTGCAACAGAGGCACGT
GAACCTTCCTCTAACCCAGCCCAAGCTGGTGCGTCTTCTGAACAGCGGAACACCAGTACT
GTAGTGGAGGCTGCTGAAACTCGTTCCAGAACAATCAACTTAAGTGAGAGGGCCAGACAA
AACAGGCAAACCAGGTTTCAACGCGCACAACAACCTGGCACTGCTCGGGGTCGTGGCCAG
CAATCTGTTACACTCAGGAAAGATGCTACGGGTCGAGGATCAAGGGGCCGCGGGGGGCGT
GGTCAGTCCTAG

Peptide Sequence

PEP ID

Zm00001d052282_P095
PEP Infomation

pep chromosome:B73_RefGen_v4:4:185936411:185959107:1 gene:Zm00001d052282 transcript:Zm00001d052282_T095 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nuclear-pore anchor
Sequence

MEKSYVIKCEEAANAIESKEKHITSLMNEISVLRTEVSQKLPQLEKLEIELALSKSSLDE
QYKRWRTAQDNYERQVILQSETIQELTNTSKQLSSLQHEITVLRQTADALKNENECLRSS
AEQEKIGLLKEKDDALQKYNELNDQNRILHNQLEALHIRLAEKERNIAGLSSHRTDNSHA
EDDLQSVISYLRRSKEIAETEISLLKQEKSRLQIELESSLKSAKEAQDLLRSQADSARAL
MFKDEEFKSLQIQVREINLLRESNIQLREENRHNFEECQKFREEAQKAKMESERLQNLLL
EKEVDAEMCKRELEMQKAEIANLNQSISELIENSKGIDLNTYEAMKNELQNIKSTLRENS
MELESAKILLSEKEVAIKILEDKLSLCQSELDSKEKKLNDVEASLKSEIDKHKKINLNLK
RKHDNLMKEKGEIAKENQSLVKQMEDLKSTQKTTSETTLEQAIKEKDFRIQTLERTLEKE
RDDNKKEKAKSRRNENTIFGALQKVQQDKKQVEESIDKHKQAVRELIENYPGLSSEVPPI
SALEEQLLSYFRAAKDMEESSSPFRDGAATQTPVVETAPVDAPTSAGVAGRPVDTSSRPA
KAKMTEERAVPKPSSEVRRPGGRRPLVRPTLERTEEPHADTDISAVDASTVQDKGGPPAE
QETSGILPVLQPLSRKRLITSSQTVDSASQGEANDVNPPSKKPKEEESSQGTSELKSGQP
PLGDVAAQVNVLPATDDLDGQQPTEEIDTDQAPEPMVEVEATREEDGGDKDDSGDASTDI
KGQDADANIDANAIPLEEEHVVAKSEAIIESFDDDRKTEDSKEDAQRTTATDVDDDMEEG
ELAEEPEDKSDVDMSEIEGEATAERAAVEPDQSPITQPGAADASPSRTADASPAREPSPS
PVQAGASSRPQNTSTATEAREPSSNPAQAGASSEQRNTSTVVEAAETRSRTINLSERARQ
NRQTRFQRAQQPGTARGRGQQSVTLRKDATGRGSRGRGGRGQS

Transcript Sequence

Transcript ID

Zm00001d052282_T095
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:185936411:185959107:1 gene:Zm00001d052282 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nuclear-pore anchor
Sequence

TTGTACAGTACAAAGAAATCGCACACTCAAATGAAGTTGCGTTGAAGCAATTGGAATCTG
CACATCAGGACTACAAGGCTGAGACCGAGGTTGGCAGGAAAGCCTTGGAAGATGAGATTG
TTAACTTGAGGGATAAGTTATCAGAAATGGAGAAGAGTTATGTCATTAAGTGTGAAGAAG
CTGCCAATGCAATTGAATCTAAAGAGAAGCACATCACTTCTCTCATGAATGAAATTTCTG
TTTTAAGAACAGAAGTTTCTCAGAAACTACCACAGTTAGAAAAATTGGAAATTGAATTGG
CTTTGTCAAAGAGTTCACTTGATGAGCAGTATAAGCGCTGGCGAACTGCCCAAGATAATT
ATGAACGCCAGGTTATTCTGCAATCTGAGACGATACAGGAGTTGACAAATACTTCTAAGC
AGCTATCTTCGTTGCAGCATGAAATCACTGTACTTCGCCAGACTGCAGATGCACTGAAAA
ATGAAAATGAATGTCTAAGATCTTCTGCTGAACAAGAAAAGATAGGCTTATTGAAAGAGA
AGGACGATGCCCTGCAGAAGTATAATGAGCTTAATGATCAGAATAGAATTCTACACAATC
AGTTAGAAGCTTTACACATTCGGTTAGCCGAGAAAGAACGGAATATTGCTGGGCTTTCAT
CACATCGTACTGATAATTCACATGCAGAAGATGATCTACAAAGTGTCATCAGTTATCTGC
GCAGATCGAAAGAAATAGCCGAAACAGAGATATCATTGCTTAAACAGGAGAAGTCTCGGC
TTCAGATAGAACTGGAAAGTTCTTTAAAGTCTGCCAAGGAGGCACAGGACTTGTTGCGAA
GTCAAGCTGATAGTGCCAGGGCATTGATGTTCAAGGATGAAGAGTTCAAGTCACTGCAGA
TTCAGGTCAGAGAAATTAACTTGCTTCGTGAAAGCAACATACAACTTAGGGAGGAGAACA
GGCACAATTTTGAAGAATGCCAGAAATTCCGTGAAGAAGCTCAAAAGGCTAAAATGGAAT
CTGAGAGGTTGCAGAACCTTCTACTGGAGAAGGAGGTAGACGCTGAAATGTGCAAAAGAG
AACTGGAAATGCAGAAGGCAGAAATAGCTAATCTCAACCAAAGTATTTCTGAGCTGATTG
AAAATAGCAAAGGCATTGATTTGAACACTTATGAAGCCATGAAGAATGAACTTCAAAATA
TCAAATCAACCTTGAGAGAGAATTCTATGGAGCTTGAAAGTGCAAAGATACTGCTTTCTG
AGAAAGAAGTTGCCATAAAAATTTTGGAGGATAAGCTTTCATTATGTCAATCTGAATTGG
ATTCCAAGGAAAAGAAGCTGAATGATGTAGAGGCGTCCCTTAAATCTGAGATTGACAAGC
ATAAGAAGATTAATTTAAACTTAAAGAGAAAGCATGACAATTTGATGAAGGAGAAGGGAG
AGATTGCTAAAGAAAATCAAAGCCTTGTAAAGCAGATGGAGGATCTTAAATCAACTCAGA
AGACAACATCTGAAACAACACTTGAGCAGGCTATTAAAGAAAAGGATTTCAGGATACAGA
CATTAGAAAGAACTCTGGAAAAGGAAAGAGATGATAACAAGAAAGAGAAGGCAAAGAGTA
GGAGGAATGAGAACACAATCTTTGGTGCACTTCAGAAGGTGCAACAGGACAAGAAACAAG
TAGAGGAGTCTATAGATAAGCATAAGCAGGCTGTGAGAGAGTTGATTGAGAATTATCCTG
GATTATCATCTGAAGTGCCACCTATCTCTGCACTAGAAGAGCAACTTCTTTCATACTTCC
GTGCAGCTAAAGATATGGAGGAATCTTCTAGTCCCTTCCGTGATGGTGCAGCAACTCAAA
CTCCAGTTGTTGAAACTGCCCCTGTGGATGCACCTACTTCAGCTGGAGTTGCAGGACGTC
CAGTAGATACTTCGTCAAGGCCAGCTAAAGCTAAAATGACGGAAGAAAGAGCAGTTCCCA
AACCAAGCAGTGAAGTACGTAGGCCTGGAGGAAGAAGACCCCTTGTTCGTCCTACTCTTG
AACGAACTGAAGAACCTCATGCTGATACAGATATATCAGCTGTTGATGCCTCCACAGTTC
AGGACAAAGGGGGGCCACCAGCAGAGCAAGAAACTTCTGGAATTTTACCTGTGTTACAGC
CTTTGAGTCGTAAACGGCTTATCACATCTTCACAGACGGTAGACAGTGCCTCGCAGGGTG
AGGCTAATGATGTCAATCCTCCATCTAAGAAGCCCAAGGAGGAAGAATCTTCACAAGGGA
CTAGTGAACTCAAAAGTGGTCAACCACCTCTTGGGGATGTAGCGGCACAGGTTAATGTGC
TTCCAGCCACTGATGACCTAGATGGACAACAGCCTACAGAAGAGATCGATACTGATCAGG
CACCTGAGCCAATGGTAGAGGTTGAGGCAACAAGGGAAGAGGATGGGGGTGATAAAGATG
ACTCTGGAGATGCATCAACGGACATCAAAGGCCAGGATGCTGATGCTAATATTGACGCAA
ATGCAATTCCTTTAGAAGAAGAGCATGTAGTGGCAAAGTCAGAGGCAATAATTGAATCAT
TTGATGATGACCGGAAAACAGAAGATTCGAAGGAAGATGCTCAGCGTACTACTGCAACTG
ATGTTGATGATGACATGGAGGAGGGAGAGTTGGCAGAGGAACCTGAAGACAAGAGTGACG
TTGATATGTCAGAGATCGAGGGTGAGGCTACAGCCGAACGTGCTGCTGTGGAACCGGACC
AAAGTCCTATAACACAACCTGGTGCAGCTGATGCCTCACCAAGCAGAACTGCAGATGCAT
CTCCTGCTCGTGAACCTTCCCCTAGTCCGGTCCAAGCTGGTGCATCTTCTCGACCCCAGA
ATACTAGCACTGCAACAGAGGCACGTGAACCTTCCTCTAACCCAGCCCAAGCTGGTGCGT
CTTCTGAACAGCGGAACACCAGTACTGTAGTGGAGGCTGCTGAAACTCGTTCCAGAACAA
TCAACTTAAGTGAGAGGGCCAGACAAAACAGGCAAACCAGGTTTCAACGCGCACAACAAC
CTGGCACTGCTCGGGGTCGTGGCCAGCAATCTGTTACACTCAGGAAAGATGCTACGGGTC
GAGGATCAAGGGGCCGCGGGGGGCGTGGTCAGTCCTAGTAAAGTAGATTGTCTTTTCTCG
TGCAGGGATAATTTTGTCCATTGGGATAGAGACCCTTGTATTTTTAGATTGATCGACGAA
CTTCATGGGGATACAGAGACCCTTGTGTTTTTAGATTGATCGACGAATTTTGTCTCATTG
GTTTTTACTAAATGTTCCCTGACCTGCGTGCGAATCCTTGTGGGTTCTGAGACCGCTATA
TCTAATCCAAACTGTTGTGTTTGTTGGTAC