Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052263_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:185228834:185234452:1 gene:Zm00001d052263 gene_biotype:protein_coding transcript_biotype:protein_coding description:Starch synthase 2 chloroplastic/amyloplastic
Sequence

ATGCCGGGGGCAATCTCTTCCTCGTCGTCGGCTTTTCTCCTCCCCGTCGCGTCCTCCTCG
CCGCGGCGCAGGCGGGGCAGTGTGGGTGCTGCTCTGCGCTCGTACGGCTACAGCGGCGCG
GAGCTGCGGTTGCATTGGGCGCGGCGGGGCCCGCCTCAGGATGGAGCGGCGTCGGTACGC
GCCGCAGCGGCACCGGCCGGGGGCGAAAGCGAGGAGGCAGCGAAGAGCTCCTCCTCGTCC
CAGGCGGGCGCTGTTCAGGGCAGCACGGCCAAGACTCAGGCTGTGGATTCTGCTTCACCT
CCCAATCCTTTGACATCTGCTCCGAAGCAAAGTCAGAGCGCTGCAATGCAAAACGGAACG
AGTGGGGGCAGCAGCGCGAGCACCGCCGCGCCGGTGTCCGGACCCAAAGCTGATCATCCA
TCAGCTCCTGTCACCAAGAGAGAAATCGATGCCAGTGCGGTGAAGCCAGAGCCCGCAGGT
GATGATGCTAGACCGGTGGAAAGCATAGGCATCGCTGAACCGGTGGATGCTAAGGCTGAT
GCAGCTCCGGCTACAGATGCGGCGGCGAGTGCTCCTTATGACAGGGAGGATAATGAACCT
GGCCCTTTGGCTGGGCCTAATGTGATGAACGTCGTCGTGGTGGCTTCTGAATGTGCTCCT
TTCTGCAAGACAGGTGGCCTTGGAGATGTCGTGGGTGCTTTGCCTAAGGCTCTGGCGAGG
AGAGGACACCGTGTTATGGTCGTGATACCAAGATATGGAGAGTATGCCGAAGCCCGGGAT
TTAGGTGTAAGGAGACGTTACAAGGTAGCTGGACAGGATTCAGAAGTTACTTATTTTCAC
TCTTACATTGATGGAGTTGATTTTGTATTCGTAGAAGCCCCTCCCTTCCGGCACCGGCAC
AATAATATTTATGGGGGAGAAAGATTGGATATTTTGAAGCGCATGATTTTGTTCTGCAAG
GCCGCTGTTGAGGTTCCATGGTATGCTCCATGTGGCGGTACTGTCTATGGTGATGGCAAC
TTAGTTTTCATTGCTAATGATTGGCATACCGCACTTCTGCCTGTCTATCTAAAGGCCTAT
TACCGGGACAATGGTTTGATGCAGTATGCTCGCTCTGTGCTTGTGATACACAACATTGCT
CATCAGGGTCGTGGCCCTGTAGACGACTTCGTCAATTTTGACTTGCCTGAACACTACATC
GACCACTTCAAACTGTATGACAACATTGGTGGGGATCACAGCAACGTTTTTGCTGCGGGG
CTGAAGACGGCAGACCGGGTGGTGACCGTTAGCAATGGCTACATGTGGGAGCTGAAGACT
TCGGAAGGCGGGTGGGGCCTCCACGACATCATAAACCAGAACGACTGGAAGCTGCAGGGC
ATCGTGAACGGCATCGACATGAGCGAGTGGAACCCCGCTGTGGACGTGCACCTCCACTCC
GACGACTACACCAACTACACGTTCGAGACGCTGGACACCGGCAAGCGGCAGTGCAAGGCC
GCCCTGCAGCGGCAGCTGGGCCTGCAGGTCCGCGACGACGTGCCACTGATCGGGTTCATC
GGGCGGCTGGACCACCAGAAGGGCGTGGACATCATCGCCGACGCGATCCACTGGATCGCG
GGGCAGGACGTGCAGCTCGTGATGCTGGGCACCGGGCGGGCCGACCTGGAGGACATGCTG
CGGCGGTTCGAGTCGGAGCACAGCGACAAGGTGCGCGCGTGGGTGGGGTTCTCGGTGCCC
CTGGCGCACCGCATCACGGCGGGCGCGGACATCCTGCTGATGCCGTCGCGGTTCGAGCCG
TGCGGGCTGAACCAGCTCTACGCCATGGCGTACGGGACCGTGCCCGTGGTGCACGCCGTG
GGGGGGCTCCGGGACACGGTGGCGCCGTTCGACCCGTTCAACGACACCGGGCTCGGGTGG
ACGTTCGACCGCGCGGAGGCGAACCGGATGATCGACGCGCTCTCGCACTGCCTCACCACG
TACCGGAACTACAAGGAGAGCTGGCGCGGCCTGCAGGCGCGCGGCATGGCGCAGGACCTC
AGCTGGGACCACGCCGCCGTGCTGTATGAGGACGTGCTCGTCAAGGCGAAGTACCAGTGG
TGA

Peptide Sequence

PEP ID

Zm00001d052263_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:185228834:185234452:1 gene:Zm00001d052263 transcript:Zm00001d052263_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Starch synthase 2 chloroplastic/amyloplastic
Sequence

MPGAISSSSSAFLLPVASSSPRRRRGSVGAALRSYGYSGAELRLHWARRGPPQDGAASVR
AAAAPAGGESEEAAKSSSSSQAGAVQGSTAKTQAVDSASPPNPLTSAPKQSQSAAMQNGT
SGGSSASTAAPVSGPKADHPSAPVTKREIDASAVKPEPAGDDARPVESIGIAEPVDAKAD
AAPATDAAASAPYDREDNEPGPLAGPNVMNVVVVASECAPFCKTGGLGDVVGALPKALAR
RGHRVMVVIPRYGEYAEARDLGVRRRYKVAGQDSEVTYFHSYIDGVDFVFVEAPPFRHRH
NNIYGGERLDILKRMILFCKAAVEVPWYAPCGGTVYGDGNLVFIANDWHTALLPVYLKAY
YRDNGLMQYARSVLVIHNIAHQGRGPVDDFVNFDLPEHYIDHFKLYDNIGGDHSNVFAAG
LKTADRVVTVSNGYMWELKTSEGGWGLHDIINQNDWKLQGIVNGIDMSEWNPAVDVHLHS
DDYTNYTFETLDTGKRQCKAALQRQLGLQVRDDVPLIGFIGRLDHQKGVDIIADAIHWIA
GQDVQLVMLGTGRADLEDMLRRFESEHSDKVRAWVGFSVPLAHRITAGADILLMPSRFEP
CGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFNDTGLGWTFDRAEANRMIDALSHCLTT
YRNYKESWRGLQARGMAQDLSWDHAAVLYEDVLVKAKYQW

Transcript Sequence

Transcript ID

Zm00001d052263_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:185228834:185234452:1 gene:Zm00001d052263 gene_biotype:protein_coding transcript_biotype:protein_coding description:Starch synthase 2 chloroplastic/amyloplastic
Sequence

GGGGAGCTATTCCCGGGCGGGGAATTCCCCGTTGCCATCCCTACGCTCCAGGCTCTCGTT
TCCTGGTAGGCGCTGGTACAAGCGGAAGCAGCAGTAGCGTGAGGCATCCCCATGCCGGGG
GCAATCTCTTCCTCGTCGTCGGCTTTTCTCCTCCCCGTCGCGTCCTCCTCGCCGCGGCGC
AGGCGGGGCAGTGTGGGTGCTGCTCTGCGCTCGTACGGCTACAGCGGCGCGGAGCTGCGG
TTGCATTGGGCGCGGCGGGGCCCGCCTCAGGATGGAGCGGCGTCGGTACGCGCCGCAGCG
GCACCGGCCGGGGGCGAAAGCGAGGAGGCAGCGAAGAGCTCCTCCTCGTCCCAGGCGGGC
GCTGTTCAGGGCAGCACGGCCAAGACTCAGGCTGTGGATTCTGCTTCACCTCCCAATCCT
TTGACATCTGCTCCGAAGCAAAGTCAGAGCGCTGCAATGCAAAACGGAACGAGTGGGGGC
AGCAGCGCGAGCACCGCCGCGCCGGTGTCCGGACCCAAAGCTGATCATCCATCAGCTCCT
GTCACCAAGAGAGAAATCGATGCCAGTGCGGTGAAGCCAGAGCCCGCAGGTGATGATGCT
AGACCGGTGGAAAGCATAGGCATCGCTGAACCGGTGGATGCTAAGGCTGATGCAGCTCCG
GCTACAGATGCGGCGGCGAGTGCTCCTTATGACAGGGAGGATAATGAACCTGGCCCTTTG
GCTGGGCCTAATGTGATGAACGTCGTCGTGGTGGCTTCTGAATGTGCTCCTTTCTGCAAG
ACAGGTGGCCTTGGAGATGTCGTGGGTGCTTTGCCTAAGGCTCTGGCGAGGAGAGGACAC
CGTGTTATGGTCGTGATACCAAGATATGGAGAGTATGCCGAAGCCCGGGATTTAGGTGTA
AGGAGACGTTACAAGGTAGCTGGACAGGATTCAGAAGTTACTTATTTTCACTCTTACATT
GATGGAGTTGATTTTGTATTCGTAGAAGCCCCTCCCTTCCGGCACCGGCACAATAATATT
TATGGGGGAGAAAGATTGGATATTTTGAAGCGCATGATTTTGTTCTGCAAGGCCGCTGTT
GAGGTTCCATGGTATGCTCCATGTGGCGGTACTGTCTATGGTGATGGCAACTTAGTTTTC
ATTGCTAATGATTGGCATACCGCACTTCTGCCTGTCTATCTAAAGGCCTATTACCGGGAC
AATGGTTTGATGCAGTATGCTCGCTCTGTGCTTGTGATACACAACATTGCTCATCAGGGT
CGTGGCCCTGTAGACGACTTCGTCAATTTTGACTTGCCTGAACACTACATCGACCACTTC
AAACTGTATGACAACATTGGTGGGGATCACAGCAACGTTTTTGCTGCGGGGCTGAAGACG
GCAGACCGGGTGGTGACCGTTAGCAATGGCTACATGTGGGAGCTGAAGACTTCGGAAGGC
GGGTGGGGCCTCCACGACATCATAAACCAGAACGACTGGAAGCTGCAGGGCATCGTGAAC
GGCATCGACATGAGCGAGTGGAACCCCGCTGTGGACGTGCACCTCCACTCCGACGACTAC
ACCAACTACACGTTCGAGACGCTGGACACCGGCAAGCGGCAGTGCAAGGCCGCCCTGCAG
CGGCAGCTGGGCCTGCAGGTCCGCGACGACGTGCCACTGATCGGGTTCATCGGGCGGCTG
GACCACCAGAAGGGCGTGGACATCATCGCCGACGCGATCCACTGGATCGCGGGGCAGGAC
GTGCAGCTCGTGATGCTGGGCACCGGGCGGGCCGACCTGGAGGACATGCTGCGGCGGTTC
GAGTCGGAGCACAGCGACAAGGTGCGCGCGTGGGTGGGGTTCTCGGTGCCCCTGGCGCAC
CGCATCACGGCGGGCGCGGACATCCTGCTGATGCCGTCGCGGTTCGAGCCGTGCGGGCTG
AACCAGCTCTACGCCATGGCGTACGGGACCGTGCCCGTGGTGCACGCCGTGGGGGGGCTC
CGGGACACGGTGGCGCCGTTCGACCCGTTCAACGACACCGGGCTCGGGTGGACGTTCGAC
CGCGCGGAGGCGAACCGGATGATCGACGCGCTCTCGCACTGCCTCACCACGTACCGGAAC
TACAAGGAGAGCTGGCGCGGCCTGCAGGCGCGCGGCATGGCGCAGGACCTCAGCTGGGAC
CACGCCGCCGTGCTGTATGAGGACGTGCTCGTCAAGGCGAAGTACCAGTGGTGAGCGAAT
TAATTGGCGACGCCGACGCCGCTCCTGTCGCAGGACCTGGACGTTATTTAGAAGGCTCTT
CTCCCTGGCGGCTTTGATGCGTGCGTCGCATTTGCGCCGGGCGGACGGGCGACGGTGGTT
GGCCTACCGCCTACGTCGGCTGCGTGCCCTGGGAATTTGGGCGGGCACGATGATGCCACT
GGGCACCGGGCGCGGGGTAGTATGATATGAAACCGACGGCGATGGAGATGAGGCGCATGG
CATTTTCCCACTGATAAATGGGGAGTTGTATGCTACTTTAATATCGCCACTCCTGTTAGT
ATTTATATTGATGCTGTCAAGTTTTCCACTCCAAGAACAAATGACGGTAGCCGGTAAGTA
TAGGCCTATTTGTAGAGCTAGTTAGAAGTACATGTGCCCAAACCGACAACATTGTACGTA
CATTATAAAGCACGGCACTATTTGTTACTGTC