Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d052247_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:4:184666747:184669386:-1 gene:Zm00001d052247 gene_biotype:protein_coding transcript_biotype:protein_coding description:Shikimate kinase 1 chloroplastic
Sequence	ATGGAGGCGGGGGGCGTGGGCCTGGCGCTGCAGACGCGGGCGGCGGCCTTCGGCTCCGGC CAGCGCCGGGGCGGCCTACAGTCGCCCATCGGGAGGCTGAGAGTCGCTGAACCGGCGGGA GCTGCGGTTGCCGTGCGGGTTCGCGGGTCCAAGCCCGTCGTACCGCTCCGTGCGAAGAAA TCATCCGGAGGTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGAGA AAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAGTGGGAATGATG GGTTCTGGAAAAAGTACTGTGGGGAAGATCATGTCTGAAGTCTTGGGTTATTCGTTCTTT GATAGTGACAAATTAGTGGAGCAAGCTGTTGGAATGCCTTCAGTTGCTCAAATATTCAAA GTTCACAGTGAAGCCTTCTTTCGGGATAATGAGAGTAGCGTCTTGAGGGATCTGTCCTCC ATGCGACGATTAGTTGTTGCCACCGGAGGTGGTGCTGTCATCCGACCAGTTAACTGGAAA TATATGAAGAAGGGCCTATCCGTTTGGTTAGATGTGCCCTTGGATGCTCTTGCTAGGCGC ATTGCTAAAGTGGGAACCGCTTCTCGTCCTCTTCTGGACCAACCGTCCGGTGATCCATAC ACAATGGCCTTTTCTAAGCTCAGCATGCTTGCAGAGCAAAGGGGTGATGCTTATGCAAAT GCGGATGTAAGGGTTTCTCTGGAAGAGATTGCATCTAAACAAGGTCATGGCGATGTCTCT AAGCTGATGCCGACTGATATCGCAATTGAGTCACTTCATAAGATCGAGAGTTTCGTCATC GAGCACGCTGCTGATAATCCAGCTAGCGACTCGCAAGCTGAGTCACAGATCCAAAGGATA CAGACCTTGTAA

Peptide Sequence

PEP ID	Zm00001d052247_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:4:184666747:184669386:-1 gene:Zm00001d052247 transcript:Zm00001d052247_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Shikimate kinase 1 chloroplastic
Sequence	MEAGGVGLALQTRAAAFGSGQRRGGLQSPIGRLRVAEPAGAAVAVRVRGSKPVVPLRAKK SSGGHENLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVGKIMSEVLGYSFF DSDKLVEQAVGMPSVAQIFKVHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPVNWK YMKKGLSVWLDVPLDALARRIAKVGTASRPLLDQPSGDPYTMAFSKLSMLAEQRGDAYAN ADVRVSLEEIASKQGHGDVSKLMPTDIAIESLHKIESFVIEHAADNPASDSQAESQIQRI QTL

Transcript Sequence

Transcript ID	Zm00001d052247_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:184666747:184669386:-1 gene:Zm00001d052247 gene_biotype:protein_coding transcript_biotype:protein_coding description:Shikimate kinase 1 chloroplastic
Sequence	GTCACTATTTTACGTGCCCACATTTCCGCCACCGCCACCGCCACCGGCTACCACCTGCCG CCTGCGCCCTGCCCTCCCTCTGTTTTTCTAGACCCCCGGATCGCTCAGAGATTGAGTCGT AGTCGTACCCGACTAGTCGCCGCGTCCTCCTTTCCCCGCGCAGCAGCAGAGCACCACCCG GTGACCGAGCAATGGAGGCGGGGGGCGTGGGCCTGGCGCTGCAGACGCGGGCGGCGGCCT TCGGCTCCGGCCAGCGCCGGGGCGGCCTACAGTCGCCCATCGGGAGGCTGAGAGTCGCTG AACCGGCGGGAGCTGCGGTTGCCGTGCGGGTTCGCGGGTCCAAGCCCGTCGTACCGCTCC GTGCGAAGAAATCATCCGGAGGTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCC TGTTGAAGAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAG TGGGAATGATGGGTTCTGGAAAAAGTACTGTGGGGAAGATCATGTCTGAAGTCTTGGGTT ATTCGTTCTTTGATAGTGACAAATTAGTGGAGCAAGCTGTTGGAATGCCTTCAGTTGCTC AAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGAGTAGCGTCTTGAGGG ATCTGTCCTCCATGCGACGATTAGTTGTTGCCACCGGAGGTGGTGCTGTCATCCGACCAG TTAACTGGAAATATATGAAGAAGGGCCTATCCGTTTGGTTAGATGTGCCCTTGGATGCTC TTGCTAGGCGCATTGCTAAAGTGGGAACCGCTTCTCGTCCTCTTCTGGACCAACCGTCCG GTGATCCATACACAATGGCCTTTTCTAAGCTCAGCATGCTTGCAGAGCAAAGGGGTGATG CTTATGCAAATGCGGATGTAAGGGTTTCTCTGGAAGAGATTGCATCTAAACAAGGTCATG GCGATGTCTCTAAGCTGATGCCGACTGATATCGCAATTGAGTCACTTCATAAGATCGAGA GTTTCGTCATCGAGCACGCTGCTGATAATCCAGCTAGCGACTCGCAAGCTGAGTCACAGA TCCAAAGGATACAGACCTTGTAATATCTTAATCCTTCTGTTTTGTACCGAAGCGTACCCC CTAGAGCATCGTTGGTTTATTTGTTCGTTGAAGTGTCACGAGGGAGAGAAAAAAAACCCT GAAGTATTTCTTCTTGTAAGTTGTAAAGGAATGGAATAAAGGAGCTAATAATCCGAAGTG TACCGTTGGCTGAAACA