Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d052240_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:4:184369041:184371794:-1 gene:Zm00001d052240 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pentatricopeptide repeat 5 description: pentatricopeptide repeat 5
Sequence	ATGCTTGCCTGCCCAAGCACATCAAGTCCATGGCCGCAGCGGCAGCCGCCGTCCCCGTGC CCGGGCGGGGGTGGCGGCGCCACGCGCCACGTGGCGCTCGCGGCCAGGAGCAAGCGGCGG GGTGCGGGCCCCGCGGCGGCGGAGGGGGTGGACGAGGCGGCGGCGGAAGCGGCGGAGCTG GTGCGCTCGCTGCTGCGGAGGACGGCGGGCGGCAAGGAGAGGCTGGTGCCGGTGCTGGAC CGGCACGTGCGGGTGGTCCGCACCGAGCACTGCTTCCTCCTCTTCGAGGAGCTCGGCCGT CGCGACGCCTGGCTCCAGTGTCTCGATGTATTCAGATGGATGCAGAAACAACGGTGGTAT GTTGCTGACAACGGCATCTACTCCAAGTTAATATCTGTGATGGGAAGGAAAGGGCAGATA CGGATGGCAATGTGGCTGTTCTCTCAGATGCGGAACAGCGGGTGCAAGCCTGACACTTCT GTATATAACTCCCTTATCGGCGCACATCTGCATTCACGAGACAAGACTAAGGCTTTGGCC AAAGCTCTCGGCTATTTTGAGAAGATGAAGTGTATAGAGAGATGTCAGCCGACTATTGTG ACATACAACATTCTGCTAAGGGCTTTTGCACAGGCTGGTGACACAAAGCAGGTAGACATG TTGTTCAAGGATCTGGATGAAAGTGTAGTATCGCCTGACGTATATACTTACAATGGGGTG CTTGACGCATACGGGAAGAATGGCATGATCAAAGAGATGGAATCTGTGTTGGTGCGGATG AAAAGCACGCAATGCCGTCCAGATGTGATCACATTCAACATACTCATAGATTCATACGGG AGAAAGCAGACATTTGATAAGATGGAGCAGGTGTTCAAGAGCCTACTGCGGTCAAAGGAG AGGCCTACACACCCGACGTTTAATTCCATGATAACAAATTATGGGAGAGCAAGGCTCAGA GAGAAAGCGGAGTCTGTGGTTGAGAAGATGGAAGAATTGGGATTCAAACCAAACTATGTG ACACAGGAATGCCTCATCATAATGTACGCTCATTGTGATTGTGTATCAAAGGCCCGGCAA GTGTTTGATGAGCTTGTGACCTCGCAAACCAAAGTGCACCTTTCTTCGTTGAACTCGATG CTTGAAGCCTACTGCATGAACGGCTTGCACACAGAAGCAGATCGGCTGCTGGATACTGCA CTGCAGCAATGTGTTGTGCCCAATGGTTCCACCTACAAGCTGCTCTACAAGGCCTACACC AAGGCGAACGATAAGTTACTAGTGCAGAAGTTGCTCAAGAGAATGAATAAACAGGGGATT GTCCCGAACAAAAAGTTCTTCCTGGACGCTTTGGAAGCATTTGGCACCTCTGACAGGAAA CCCAGGACATCGCCAGGCATAAACTCTGCAAGCAAGCCAAGTACAGATTCTGCTGGTGAT TCAGAAACAGCTACTTCTGACAAACCAGAGGTAAGCGTTTGGCATGTAGCTGCTACATAA

Peptide Sequence

PEP ID	Zm00001d052240_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:4:184369041:184371794:-1 gene:Zm00001d052240 transcript:Zm00001d052240_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pentatricopeptide repeat 5 description: pentatricopeptide repeat 5
Sequence	MLACPSTSSPWPQRQPPSPCPGGGGGATRHVALAARSKRRGAGPAAAEGVDEAAAEAAEL VRSLLRRTAGGKERLVPVLDRHVRVVRTEHCFLLFEELGRRDAWLQCLDVFRWMQKQRWY VADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKTKALA KALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGV LDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKE RPTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQ VFDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYKLLYKAYT KANDKLLVQKLLKRMNKQGIVPNKKFFLDALEAFGTSDRKPRTSPGINSASKPSTDSAGD SETATSDKPEVSVWHVAAT

Transcript Sequence

Transcript ID	Zm00001d052240_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:184369041:184371794:-1 gene:Zm00001d052240 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pentatricopeptide repeat 5 description: pentatricopeptide repeat 5
Sequence	GCGTGTTCGATTCACGTCGGGTTCAAATCCCCGATCCAACCGGATCTTTTTTTGCTAAAA TTGTCGATTCGTCTTCTCCACCGTTCGTCAACCGCTAAAAACATTTCCAACAGCCGATCC TCTTTTTCGCTAAAATTTCTGTAACTCATATTTTTTCCCCAGCTACAACTTTTCTGTAAC TCGTCTAATCTGTAATCTGCACGGCTCCACCCCTATCCCCTTCCTCTCCCCTACCCAAGC AGGCAGGCAGACATCGCAATTCTTCAATTGCCAACCACAGCGCAGTCCAATGCAGCACTA GAGCCGGCGCAGCCTTTCTTTGGTCCAACCCGATGCTTGCCTGCCCAAGCACATCAAGTC CATGGCCGCAGCGGCAGCCGCCGTCCCCGTGCCCGGGCGGGGGTGGCGGCGCCACGCGCC ACGTGGCGCTCGCGGCCAGGAGCAAGCGGCGGGGTGCGGGCCCCGCGGCGGCGGAGGGGG TGGACGAGGCGGCGGCGGAAGCGGCGGAGCTGGTGCGCTCGCTGCTGCGGAGGACGGCGG GCGGCAAGGAGAGGCTGGTGCCGGTGCTGGACCGGCACGTGCGGGTGGTCCGCACCGAGC ACTGCTTCCTCCTCTTCGAGGAGCTCGGCCGTCGCGACGCCTGGCTCCAGTGTCTCGATG TATTCAGATGGATGCAGAAACAACGGTGGTATGTTGCTGACAACGGCATCTACTCCAAGT TAATATCTGTGATGGGAAGGAAAGGGCAGATACGGATGGCAATGTGGCTGTTCTCTCAGA TGCGGAACAGCGGGTGCAAGCCTGACACTTCTGTATATAACTCCCTTATCGGCGCACATC TGCATTCACGAGACAAGACTAAGGCTTTGGCCAAAGCTCTCGGCTATTTTGAGAAGATGA AGTGTATAGAGAGATGTCAGCCGACTATTGTGACATACAACATTCTGCTAAGGGCTTTTG CACAGGCTGGTGACACAAAGCAGGTAGACATGTTGTTCAAGGATCTGGATGAAAGTGTAG TATCGCCTGACGTATATACTTACAATGGGGTGCTTGACGCATACGGGAAGAATGGCATGA TCAAAGAGATGGAATCTGTGTTGGTGCGGATGAAAAGCACGCAATGCCGTCCAGATGTGA TCACATTCAACATACTCATAGATTCATACGGGAGAAAGCAGACATTTGATAAGATGGAGC AGGTGTTCAAGAGCCTACTGCGGTCAAAGGAGAGGCCTACACACCCGACGTTTAATTCCA TGATAACAAATTATGGGAGAGCAAGGCTCAGAGAGAAAGCGGAGTCTGTGGTTGAGAAGA TGGAAGAATTGGGATTCAAACCAAACTATGTGACACAGGAATGCCTCATCATAATGTACG CTCATTGTGATTGTGTATCAAAGGCCCGGCAAGTGTTTGATGAGCTTGTGACCTCGCAAA CCAAAGTGCACCTTTCTTCGTTGAACTCGATGCTTGAAGCCTACTGCATGAACGGCTTGC ACACAGAAGCAGATCGGCTGCTGGATACTGCACTGCAGCAATGTGTTGTGCCCAATGGTT CCACCTACAAGCTGCTCTACAAGGCCTACACCAAGGCGAACGATAAGTTACTAGTGCAGA AGTTGCTCAAGAGAATGAATAAACAGGGGATTGTCCCGAACAAAAAGTTCTTCCTGGACG CTTTGGAAGCATTTGGCACCTCTGACAGGAAACCCAGGACATCGCCAGGCATAAACTCTG CAAGCAAGCCAAGTACAGATTCTGCTGGTGATTCAGAAACAGCTACTTCTGACAAACCAG AGGTAAGCGTTTGGCATGTAGCTGCTACATAAGGCTGTTGGTTTGAGCAAGCTCGTCGAA TTACCTGACATCAGGAAGAACACATTTGATCTGCACCAGAAACCGTTAATACAGTGTACT TGGAGCTACAGGAGTTCCTCTACTCCCAACAGGACGCTCCTTTCTTAACGGAAGAATGCT AAAACCTTTCGTGTTTCGGCAAAATCTGCTTGTACATGTACTCTGTTATCAAACGTAGGT ATTTTGTTTCTAGTCATTATTGGGCATCACAAAAATTCTGGCTCTCTGTACTCGTCGATT GTTATTACATGCCTGTTCCTTCAATCCTTCTGTGGTCTCTATTTACTGAGCATCTCCCGA TACATAAAACTGGGAACTGGAATGACATGCATGCTGCAGCACGTTGTTTCAGAAAAATGC TCCTTTTTTGTAAATCGCAAGCAGCATAAGGCCACGTTTGAATTGATCAGTTCGCT