Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052145_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:4:181028188:181033091:1 gene:Zm00001d052145 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein CPR-5
Sequence

ATGAACGGGGCCCATATCGCCGCCGCCTCGCCGGAGGCCGGCGGGTCGTCCTCGTCGGCC
TCGTCTTCCGGCGTCTCGGCGTCCGGGCGCTCCTGGCTGCTCAAGGGGGTGCACCTGCGG
CGGCGGCGCCGGTGGCGGCGGCAGGTGGCCGTTAGGGGAGGGGTGAGAGCCGATGGCGGC
GATGTGCAGGATCTTGCGCTGCCTCTCGGGATGTCCTTCGCGGCGGTGCTTGCCCAGGTT
GTAAATAGATGCGCTGGTTCTGAAGGGGGATTACGACCTGATGTCCTCTCAAAGATGTGT
ACCTCGGCAGTGAAGGAGTCCTTAACAAATATTTATGGTGACAGATTTCATAGCTTCATG
AGTAACTTTGAGAAAGCTTTTGGTAGTACATTGAGAACCATTCACCTTATCAATGAAACG
CCTGTTTTTGAGCAAGATGTGGAGCAATGTTCTTACAAAGATGATGATTCTGTACCTCAA
ATCAAGTTGGGTGGTGCTGATTCATTACCTGAAATAAAGGTTGGTGGTGCTGATTCACAA
AGTCAGATACATGATGTCCAGACTGACATGCCCTCGAGTTCAATGAATAGCCAGATTGTT
CTTCATACAGGCATCAATGATCAGTTGGTTCATCTTACTTGTAGCAGGTCTAATCCAGAA
ATTGGTCAGCACATCCTTAGTGTATTTGAGAGATCGCTGAATGAGCAAGCTCGTTCAAAT
GAGCTCAAAGAGCTTGAAATAGGACTTACTATGAGAAAATTGCAATTGAGTCGATCTCAG
TTAGCTCTGAGCTCTGAATCACAAATGTTAGAGAAGATCAAAGTTCATATGGGATTTCAG
AAAGCCTCATTCAAAGAGAAGAAATTCAAGACTGAAATGGAGGATACAAAGCATGCAGAA
CTTTTCAGGAAACTTATAGATATGCTCCTTACTGCAGTGGTACTCATGTCTGTCTGTTTT
GGATATGGAACATATATTTATTCGTACCAGCGGATAACTGCTGCTACTTCAGCTTGTGCA
GCAATTTCAAGGGAGTATACATCTTGGTGGATGCCAAGTTCAGTGTCAGCAATCAACTCC
GGTTTGCTGCTTTTCAAATGCCATGTGATAGCCGCAACAAGGATATTCTTTGGAATTTTG
ATGCTCCTACTAATCGGTTGGTTGATATTCCAGCGTTCTGCAATGACTGGACCAAACATG
CCAGTAACATTCAATGTTATGATATTGGGAGTTCTTTGTGGTTATTTTGGAAGCTGCTGT
GTTGACACACTGGGCGGGGATGGAAATGTATGGCTTATATACTGGGAGGCCCTTTGCTCC
ATCCATTTACTTGGAAATATTTGGCCATCTCTTTTACATCACATGCTGTATGGTCCTATT
TCTGTGACTCACAGGACCAAGGCTGGTCATTTGCCATATTGGGCCCGCCGATACACATTT
TACATTTTGGTGTCACTTATTCTGCCATGCTTGGCTGGTTTGCTGCCATTTGCATCTCTG
TCAGACTGGAAAGAGCTTGCTGTTCAATATTTGAAGTCCAGATTCAGTGGAATTAATATT
GAGGATTGA

Peptide Sequence

PEP ID

Zm00001d052145_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:4:181028188:181033091:1 gene:Zm00001d052145 transcript:Zm00001d052145_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein CPR-5
Sequence

MNGAHIAAASPEAGGSSSSASSSGVSASGRSWLLKGVHLRRRRRWRRQVAVRGGVRADGG
DVQDLALPLGMSFAAVLAQVVNRCAGSEGGLRPDVLSKMCTSAVKESLTNIYGDRFHSFM
SNFEKAFGSTLRTIHLINETPVFEQDVEQCSYKDDDSVPQIKLGGADSLPEIKVGGADSQ
SQIHDVQTDMPSSSMNSQIVLHTGINDQLVHLTCSRSNPEIGQHILSVFERSLNEQARSN
ELKELEIGLTMRKLQLSRSQLALSSESQMLEKIKVHMGFQKASFKEKKFKTEMEDTKHAE
LFRKLIDMLLTAVVLMSVCFGYGTYIYSYQRITAATSACAAISREYTSWWMPSSVSAINS
GLLLFKCHVIAATRIFFGILMLLLIGWLIFQRSAMTGPNMPVTFNVMILGVLCGYFGSCC
VDTLGGDGNVWLIYWEALCSIHLLGNIWPSLLHHMLYGPISVTHRTKAGHLPYWARRYTF
YILVSLILPCLAGLLPFASLSDWKELAVQYLKSRFSGINIED

Transcript Sequence

Transcript ID

Zm00001d052145_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:181028188:181033091:1 gene:Zm00001d052145 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein CPR-5
Sequence

ACCGGAGCTTCCTTCCGCATTTGCTTCAGCGGCTAACTCGGCGTCATTACGACGCCGTTT
CGCTATCGCGTTCCCATCTCCAGTTCGTTTCATAGCCGGCGAAGAATTTCTTCGTTACTT
TACTTCCAAGCGGAGTCCAGGGCAAAATTTCACAGTAGTGCGCAGCTTCAGTTCAATATA
CCCTAGCGCCTCTCTTCCCCCACAGGGCTCTTTCCCGTATGAACGGGGCCCATATCGCCG
CCGCCTCGCCGGAGGCCGGCGGGTCGTCCTCGTCGGCCTCGTCTTCCGGCGTCTCGGCGT
CCGGGCGCTCCTGGCTGCTCAAGGGGGTGCACCTGCGGCGGCGGCGCCGGTGGCGGCGGC
AGGTGGCCGTTAGGGGAGGGGTGAGAGCCGATGGCGGCGATGTGCAGGATCTTGCGCTGC
CTCTCGGGATGTCCTTCGCGGCGGTGCTTGCCCAGGTTGTAAATAGATGCGCTGGTTCTG
AAGGGGGATTACGACCTGATGTCCTCTCAAAGATGTGTACCTCGGCAGTGAAGGAGTCCT
TAACAAATATTTATGGTGACAGATTTCATAGCTTCATGAGTAACTTTGAGAAAGCTTTTG
GTAGTACATTGAGAACCATTCACCTTATCAATGAAACGCCTGTTTTTGAGCAAGATGTGG
AGCAATGTTCTTACAAAGATGATGATTCTGTACCTCAAATCAAGTTGGGTGGTGCTGATT
CATTACCTGAAATAAAGGTTGGTGGTGCTGATTCACAAAGTCAGATACATGATGTCCAGA
CTGACATGCCCTCGAGTTCAATGAATAGCCAGATTGTTCTTCATACAGGCATCAATGATC
AGTTGGTTCATCTTACTTGTAGCAGGTCTAATCCAGAAATTGGTCAGCACATCCTTAGTG
TATTTGAGAGATCGCTGAATGAGCAAGCTCGTTCAAATGAGCTCAAAGAGCTTGAAATAG
GACTTACTATGAGAAAATTGCAATTGAGTCGATCTCAGTTAGCTCTGAGCTCTGAATCAC
AAATGTTAGAGAAGATCAAAGTTCATATGGGATTTCAGAAAGCCTCATTCAAAGAGAAGA
AATTCAAGACTGAAATGGAGGATACAAAGCATGCAGAACTTTTCAGGAAACTTATAGATA
TGCTCCTTACTGCAGTGGTACTCATGTCTGTCTGTTTTGGATATGGAACATATATTTATT
CGTACCAGCGGATAACTGCTGCTACTTCAGCTTGTGCAGCAATTTCAAGGGAGTATACAT
CTTGGTGGATGCCAAGTTCAGTGTCAGCAATCAACTCCGGTTTGCTGCTTTTCAAATGCC
ATGTGATAGCCGCAACAAGGATATTCTTTGGAATTTTGATGCTCCTACTAATCGGTTGGT
TGATATTCCAGCGTTCTGCAATGACTGGACCAAACATGCCAGTAACATTCAATGTTATGA
TATTGGGAGTTCTTTGTGGTTATTTTGGAAGCTGCTGTGTTGACACACTGGGCGGGGATG
GAAATGTATGGCTTATATACTGGGAGGCCCTTTGCTCCATCCATTTACTTGGAAATATTT
GGCCATCTCTTTTACATCACATGCTGTATGGTCCTATTTCTGTGACTCACAGGACCAAGG
CTGGTCATTTGCCATATTGGGCCCGCCGATACACATTTTACATTTTGGTGTCACTTATTC
TGCCATGCTTGGCTGGTTTGCTGCCATTTGCATCTCTGTCAGACTGGAAAGAGCTTGCTG
TTCAATATTTGAAGTCCAGATTCAGTGGAATTAATATTGAGGATTGATTATTGAGAGATT
GGTTGTGGTTACCGGTGTAATCTCAATCCCATTTTGCGAAGGTGTAAAGGTTTTTTCTGT
TTGTCACATATGAATTGTATATCATTGTAGCGAAGGAGGGAAGATTTTTTTGTTTGGCTT
CCTTTCATCCTCGGACTGAAGATATGTAAACAAAGTTGTTGGAATGACAACAAAATATCT
CCTTTCCTTGGTAGTGGAATATCAGATGGGCTAGGTTCTGATAGTTGTGCTCCTATGCGC
ACTGCTACAGATATCAAGAGCAAGGCACTTCATATCGGGAAGCTTAGAAATATAATACAG
TGTGCAATTTCATTGCAGATTTTTTGTGACCCTTTTTGTGCAAGGACATTGTCCACAGTG
ATTGTTATCTGATGATTTCTCTTCCCCTCTCTTCTCAATCATCTAGGTTGCAGTTCTTCT
CTTCAGTGGGAATCCACTCTACATTGAAAGTTTTGCTTGCATATAGTCCTTCAGATGCAT
GTATGTTGTAAAAGGATGCTCAGAAGCGCAATGTATCATTTCTATTTAGT