Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d052138_T004
CDS Infomation	cds chromosome:B73_RefGen_v4:4:180623149:180630064:1 gene:Zm00001d052138 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase COP1
Sequence	ATGGGCGACTCCTCGGTGGCCGGCGCGCTTGTGCCGTCCGTGCCCAAGCCGGAGACCGCG CCGTCCGGTGACAACTCTACGGCGGCGCTGGCGCTGCCGGAAGAGGCGGGGACGCGCGCG GCGTCGGCGTCGCCGCAGGGACCTGCGGAGGAAGAGGGCCCCGCCGATAGGGACCTCCTC TGCCCGATCTGCATGGCCGTCATCAAGGATGCCTTCCTCACCGCCTGCGGCCACAGCTTC TGCTACATGTGCGTCGTCACGCACCTCAGCAACAAGAGCGACTGCCCCTGCTGCGGGCAC TACCTTACCAAGGCCCAGCTCTACCCAAACTTTCTCCTTGACAAGGTTCTGAAGAAAATA TCAGCCCGACAAATCGCAAAAACAGCGTCACCGGTCGATCAATTTCGATGTGCATTGCAA CAGGGAAATGAAATGGGAGTTAAAGAGTTAGATAGCCTTATGACTTTGATTGCTGAGAAG AAGCGGCAAATGGAACAACAAGAATCGGAGACAAATATGCAAATATTGTTAGTCTTCTTG CACTGCCTTAGAAAGCAAAAGCTGGAAGAGTTGAATGAGATCCAAAGTGATCTACAGTAC ATCAAAGAGGATATAAGTGCTGTGGAGAGACATAGGGTAGAATTATACCGCACAAAAGAA AGGTACTCCATGAAGCTGCGCATGCTTTTAGATGAGCCTACTGCACAAAAAATGTGGCCC TCTCCTATGGACAAAGCTAGTTGTCGCTTTCCTCCCAACTCTCGGACACCACTTGGCGGA TCATGTCCAGGAACTTTACAGAATAAGAAGCTTGATCCGAAAGCTCAAGTAAGCCATCAA GGATTTCAAAGGAGAGATGCTCTAACTTCTTCTGACCCTCCTAACTCCTCTATTCAATCG GGTAATGTCATTGCTAGGAAGAGACGAGTTCAAGCACAGTTCAATGAGCTTCAAGAATAC TACCTGCAAAGACGGCGTACTGGAGCACAGGCACGCAGACAAGAAGAAAGAGAGACCGTT GCAATGAATAGAGAAGGCTATCATGCAGGTCTTCAGGATTTCCAGTCTGTGCTAACAACA TTCACTCGATATAGTCGTCTACGTGTCATTGCGGAACTAAGACATGGAGACTTGTTTCAC TCTGCCAATATTGTGTCCAGTATTGAATTTGATCGTGATGATGAACTATTTGCTACTGCT GGAGTCTCGAAACGTATTAAAGTCTTCGAATTTTCTACTGTTGTTAATGAACCATCAGAT GTGCATTGCCCGGTTGTTGAAATGGCTACCAGATCTAAACTTAGCTGCCTAAGCTGGAAC AAGTACTCAAAAAATATTATCGCAAGCAGTGACTATGAGGGTATAGTAACTGTGTGGGAT GTCCAGACCCGCCAGAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTT GATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAGGTGAAA GTGTGGTGCACAAAACAAGAAGCAAGCGTGATCAATATTGATATGAAAGCAAATATTTGT TCGGTTAAATATAATCCTGGGTCAAGCTTCTATGTTGCAGTCGGATCTGCTGATCACCAT ATTCATTACTTCGATTTACGTAATCCAAGTGCGCCTGTCCATGTTTTTGGGGGGCACAAG AAAGCAGTATCGTATGTCAAATTCTTATCTAACAATGAGCTTGCATCTGCATCAACAGAT AGCACGTTACGTTTATGGGATGTCAAGGATAATTTGCCGGTACGGACATTCAGAGGGCAC AAAAATGAAAAGAACTTCGTTGGATTGTCTGTGAACAATGAGTATATTGCTTGTGGAAGT GAAACAAATGAGGTTTTTGTTTATCACAAGGCTATCTCAAAACCAGCAGCAAGCCATAGA TTTGTATCCTCTAACCTGGATGATGCCGATGATGATCCTGGTTCTTATTTCATTAGTGCT GTCTGCTGGAAGAGTGATAGCCCCACCATGTTAGCTGCTAACAGTCAGGGAACCATAAAA GTTCATGTACTTGCTCCTTGA

Peptide Sequence

PEP ID	Zm00001d052138_P004
PEP Infomation	pep chromosome:B73_RefGen_v4:4:180623149:180630064:1 gene:Zm00001d052138 transcript:Zm00001d052138_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase COP1
Sequence	MGDSSVAGALVPSVPKPETAPSGDNSTAALALPEEAGTRAASASPQGPAEEEGPADRDLL CPICMAVIKDAFLTACGHSFCYMCVVTHLSNKSDCPCCGHYLTKAQLYPNFLLDKVLKKI SARQIAKTASPVDQFRCALQQGNEMGVKELDSLMTLIAEKKRQMEQQESETNMQILLVFL HCLRKQKLEELNEIQSDLQYIKEDISAVERHRVELYRTKERYSMKLRMLLDEPTAQKMWP SPMDKASCRFPPNSRTPLGGSCPGTLQNKKLDPKAQVSHQGFQRRDALTSSDPPNSSIQS GNVIARKRRVQAQFNELQEYYLQRRRTGAQARRQEERETVAMNREGYHAGLQDFQSVLTT FTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSKRIKVFEFSTVVNEPSD VHCPVVEMATRSKLSCLSWNKYSKNIIASSDYEGIVTVWDVQTRQSVMEYEEHEKRAWSV DFSRTEPSMLVSGSDDCKVKVWCTKQEASVINIDMKANICSVKYNPGSSFYVAVGSADHH IHYFDLRNPSAPVHVFGGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGH KNEKNFVGLSVNNEYIACGSETNEVFVYHKAISKPAASHRFVSSNLDDADDDPGSYFISA VCWKSDSPTMLAANSQGTIKVHVLAP

Transcript Sequence

Transcript ID	Zm00001d052138_T004
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:180623149:180630064:1 gene:Zm00001d052138 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase COP1
Sequence	GCTCCACACGGCCACACCCACAGAACCCAATTCCCTCGCGCGCTCCCCCTTCGGCCCTTG AGCCCTTCCACCCTCTCCCAGGCATCACACATTCCACCACCACCGCCGCCGCCATCACCA CTGTGACCACCAGCCCCACACTCGTATGTGATTATTGGCACCCGGACGCCACCGCCTCCG CCTCCACCACCGACTGCGCCATGGGCGACTCCTCGGTGGCCGGCGCGCTTGTGCCGTCCG TGCCCAAGCCGGAGACCGCGCCGTCCGGTGACAACTCTACGGCGGCGCTGGCGCTGCCGG AAGAGGCGGGGACGCGCGCGGCGTCGGCGTCGCCGCAGGGACCTGCGGAGGAAGAGGGCC CCGCCGATAGGGACCTCCTCTGCCCGATCTGCATGGCCGTCATCAAGGATGCCTTCCTCA CCGCCTGCGGCCACAGCTTCTGCTACATGTGCGTCGTCACGCACCTCAGCAACAAGAGCG ACTGCCCCTGCTGCGGGCACTACCTTACCAAGGCCCAGCTCTACCCAAACTTTCTCCTTG ACAAGGTTCTGAAGAAAATATCAGCCCGACAAATCGCAAAAACAGCGTCACCGGTCGATC AATTTCGATGTGCATTGCAACAGGGAAATGAAATGGGAGTTAAAGAGTTAGATAGCCTTA TGACTTTGATTGCTGAGAAGAAGCGGCAAATGGAACAACAAGAATCGGAGACAAATATGC AAATATTGTTAGTCTTCTTGCACTGCCTTAGAAAGCAAAAGCTGGAAGAGTTGAATGAGA TCCAAAGTGATCTACAGTACATCAAAGAGGATATAAGTGCTGTGGAGAGACATAGGGTAG AATTATACCGCACAAAAGAAAGGTACTCCATGAAGCTGCGCATGCTTTTAGATGAGCCTA CTGCACAAAAAATGTGGCCCTCTCCTATGGACAAAGCTAGTTGTCGCTTTCCTCCCAACT CTCGGACACCACTTGGCGGATCATGTCCAGGAACTTTACAGAATAAGAAGCTTGATCCGA AAGCTCAAGTAAGCCATCAAGGATTTCAAAGGAGAGATGCTCTAACTTCTTCTGACCCTC CTAACTCCTCTATTCAATCGGGTAATGTCATTGCTAGGAAGAGACGAGTTCAAGCACAGT TCAATGAGCTTCAAGAATACTACCTGCAAAGACGGCGTACTGGAGCACAGGCACGCAGAC AAGAAGAAAGAGAGACCGTTGCAATGAATAGAGAAGGCTATCATGCAGGTCTTCAGGATT TCCAGTCTGTGCTAACAACATTCACTCGATATAGTCGTCTACGTGTCATTGCGGAACTAA GACATGGAGACTTGTTTCACTCTGCCAATATTGTGTCCAGTATTGAATTTGATCGTGATG ATGAACTATTTGCTACTGCTGGAGTCTCGAAACGTATTAAAGTCTTCGAATTTTCTACTG TTGTTAATGAACCATCAGATGTGCATTGCCCGGTTGTTGAAATGGCTACCAGATCTAAAC TTAGCTGCCTAAGCTGGAACAAGTACTCAAAAAATATTATCGCAAGCAGTGACTATGAGG GTATAGTAACTGTGTGGGATGTCCAGACCCGCCAGAGTGTGATGGAATATGAAGAGCATG AGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGA GTGACGATTGCAAGGTGAAAGTGTGGTGCACAAAACAAGAAGCAAGCGTGATCAATATTG ATATGAAAGCAAATATTTGTTCGGTTAAATATAATCCTGGGTCAAGCTTCTATGTTGCAG TCGGATCTGCTGATCACCATATTCATTACTTCGATTTACGTAATCCAAGTGCGCCTGTCC ATGTTTTTGGGGGGCACAAGAAAGCAGTATCGTATGTCAAATTCTTATCTAACAATGAGC TTGCATCTGCATCAACAGATAGCACGTTACGTTTATGGGATGTCAAGGATAATTTGCCGG TACGGACATTCAGAGGGCACAAAAATGAAAAGAACTTCGTTGGATTGTCTGTGAACAATG AGTATATTGCTTGTGGAAGTGAAACAAATGAGGTTTTTGTTTATCACAAGGCTATCTCAA AACCAGCAGCAAGCCATAGATTTGTATCCTCTAACCTGGATGATGCCGATGATGATCCTG GTTCTTATTTCATTAGTGCTGTCTGCTGGAAGAGTGATAGCCCCACCATGTTAGCTGCTA ACAGTCAGGGAACCATAAAAGTTCATGTACTTGCTCCTTGATGTCGTGGAGGGCGTTCAA GAGATTTACAGCCAGCGCGTGTATGTCGTACTGTCCAGGTGTTCCCTTTCGTGCCATTAT ATTCCCCAAAAGCGAGAATGGAGGCATTATTGATCTCCGGTTAGGGCATGAATTTTTGCA GACGATGGCCAGCTGACGTAGGGTTTTGAGGTATCAGAATGTGCATAATCATGTTTATGT TGTACAGGTGTAAATCAGCCAAGTTATTGATTACAAGTGTGACATGAGAAATACACATTA ATAAAAACTCCAGCTCGGTTGTACAGAGATTGTGT