Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d052110_T051
CDS Infomation	cds chromosome:B73_RefGen_v4:4:179900099:179926879:-1 gene:Zm00001d052110 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:opaque endosperm1 description: opaque endosperm1
Sequence	ATGTTCTTGAAACAGAAACCAATTGGAATTATTGCACTGCTGGATGAAGCCTGTATGTTT CCCAAATCTACGCATGAGACCTTTGCGACAAAGATGTTCAGAAACTTCTCTTCCCATCTT AGGCTCGAGAGGACAAAATTCTCAGAAACAGATTTTACCATCTCACACTATGCTGGGAAG GTCACGTATCAAACAGATTCTTTTCTGGAAAAGAATCGAGATTATATTGTTGCAGAACAC TGCAATCTTCTATCATCTTCAAGGTGCCCATTTGTTTCTGGACTTTTCACTTCATTGCCT GAAGAATCTATAAGATCTTCATACAAGTTCTCATCAGTTGCTTCCAGATTCAAGCTACAA TTGCAAGCCCTGATGGAAACCCTAAACTCGACTGAACCTCACTATGTACGCTGTGTGAAG CCCAACTCTGCTAATCGACCTCAGCTTTTTGAAAATCAAAGTGTATTGCATCAACTTCGT TGTGGGGGTGTCTTAGAGGCTGTCCGTATTAGTCTTGCTGGCTATCCTACCAGAAGGACT TATGCTGAATTTGTTGACCGGTTTGCTGTTCTTGTGCCAGAATTGATGATTGGAAGTTAC GATGAAAAAATGATGACAAAGGGTATTCTCGAAAAGATGAAGCTTGAAAATTTTCAACTT GGTAAAACAAAGGTGTTCCTTAGGGCTGGTCAAATTGCGATTTTAGATATGCGCCGTGCT GAGATTTTGGACAACGCTGCACGGCACATTCAAGGCCGTTTCAGAACATTTATCACACGC AAAGAATTTGTGAAAACAAGGGAGGCTTCAATTTCTATACAAGCATACTGCAGAGGCTGT TTGGCAAGGAAGATGTTCGCAAACAGACGAGAAACAGCAGCAGCTGTAATTGTTCAGAAG TATGTCCGAAGATGGCTGCTACGTAGAGCTCACCTGCAAGCATGTTTGGCAGCTCTCCTT ATTCAGTCTTACATTCGAGGGTTCATCGCTCGCCGCTATTTCTCTGTCATTAGGGAACAT AAAGCTGCTACAGTGATACAGTCCACATGGAGAAGACGGAAGTTTGTCATACTTTTCCAG AATTACCGGCAAGCCACTGTGGCAATTCAGTGTTCTTGGAGACAGAAGCTTGCAAGAAAG GAGCTAAGGAAACTCAAAATGGCTGCAAATGAAGCTGGTGCACTGCGTGAGGCAAAGAAT AAGCTTGAGAAAAAGATGGATGATCTTGCTTTAAGACTTACCCTTGAAAGGAGACTGCGG GCTTCCAGTGAAGAGTCAAAATCAGTAGAAATATTGAAGCGTGACAAAATAATTGAATCA TTAAGTGCAGAATGTGCTGCCGCTAAGTCAGCTGCTCAAAATGAACATGCCAAAAAATTG CTGCTCCAAAAGCAGTTGGATGATTCTTTGAGAGAGATTACTATGTTGCAGAGTAAAAAG ATTATGTCAGCAGAAGCAGCAGAAGAAAACTCCAACCTAAAGAACTTAGTTGAATCATTA TCTACGAAGAACTCAATACTGGAGAATGAACTTATTGTGACTCGCAAAAGTAGTGATGAT ACAATGGAAAAATTGAAGGAAGTCGAGGGGAAATGCAACCATCTACAGCAAAACTTGGAC AAATTGCAGGAGAAACTTACAAACTTGGAAAATGAAAATCATGTCTTAAGACAGAAGGCA TTTAATATGCCGACAATGAACAATCTGTCTGTAGCTCCAAAGACATTATCTGAGAAATTT TCTGCATCAATTGGGCTTCCCAACAGTGAGCCAAAGCATATATATGAAAGCCCAACACCT ACAAAATATCTGGCTTCTCTTCCACAGACTTTGAGTACATCAAGGAGATCGAGGTTGCCT GTTGAAAGGCATGAGCAAAATCATGAAATTTTATTGAGATGCATCAAAGAAAATTTAGGA TATAAGGATGGCAAACCAGTTGCAGCATGTATCATTTACAAATGTCTTTTGCACTGGCGT GCTTTTGAATCAGAGCGAACTGCTATTTTTGATCACGTGATTGAGGCCATAAATGATGTC CTAAAGGGGAACGAAGCTGATGGTAGATTACCTTATTGGTTGTCCAATACCTCTGCATTG CTATGCCTTCTCCAAAGAAATCTGCGGTCAAATGGATTATTCACTACCCCGTCTCGTCGT TCTGGTGGAGCTCTAGGGAAGATAGCACAAACATTGAGGTCTCCTTCAAAGTTTATAGGC CGCAGTGATACTCTACCACATGTTGATGCACGGTATCCAGCCATACTATTCAAACAGCAG CTTACTGCATGTGTCGAAAAGATATTTGGGCAGCTCAGAGATAATCTAAAAAAGGAAATA TCACCTCTTCTTAATGTTTGCATTCAGGCTCCAAAGTCAACACGTGGGCAATCTGGAAAA GCATCCAAGTCATCTGGAGTTGGTGCCCACCCAGCATCGAACTCCAACTGGGACAATATC GTCAATTTCCTTGACTTACTTATGGATACATTGCGCGAAAATTATGTGCCATCCTTCTTT ATACGTAAACTTATCACACAATTATTCTCCTTCATCAATATACAGTTGTTTAACAGTCTT CTTCTCCGACGTGAATGTTGTACATTCTCCAATGGGGAATACGTGAAAGCTGGGCTATCG TTGTTGGAGAAATGGATTACTGATGTCACAGATGAGTTTGCGGGTACATCTTGGCACGAG CTCAATTATATCAGACAAGCTGTTGGATTTTTGGTTATACACCAAAAAAGAAAAAAGACG CTTGAGGAGATCAAGCAAGATCTTTGCCCGTCCTTGAGTGTTCGCCAAATCTATAGAATA TGCTCGATGTATTGGGATGACAAATACGGTACCCAAGGCATTTCAACCGAGGTGGTTGCT GCAATGCGGGAGATGGTCAACAAAGATACCCAGAATCTTGTGTCAAATTCCTTCTTGTTG GATGATGACTTAAGTATACCATTCTCTACCGAGGATCTATCAATGGCAATCCCGTCAATA GATTATGCTGACGTCGATCTTCCAGAATCTCTTCAGCACTATACATCAGTACAGTTTCTA CTAAGGCAGCAGGATCCACAGCCTGCCCAATAG

Peptide Sequence

PEP ID	Zm00001d052110_P051
PEP Infomation	pep chromosome:B73_RefGen_v4:4:179900099:179926879:-1 gene:Zm00001d052110 transcript:Zm00001d052110_T051 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:opaque endosperm1 description: opaque endosperm1
Sequence	MFLKQKPIGIIALLDEACMFPKSTHETFATKMFRNFSSHLRLERTKFSETDFTISHYAGK VTYQTDSFLEKNRDYIVAEHCNLLSSSRCPFVSGLFTSLPEESIRSSYKFSSVASRFKLQ LQALMETLNSTEPHYVRCVKPNSANRPQLFENQSVLHQLRCGGVLEAVRISLAGYPTRRT YAEFVDRFAVLVPELMIGSYDEKMMTKGILEKMKLENFQLGKTKVFLRAGQIAILDMRRA EILDNAARHIQGRFRTFITRKEFVKTREASISIQAYCRGCLARKMFANRRETAAAVIVQK YVRRWLLRRAHLQACLAALLIQSYIRGFIARRYFSVIREHKAATVIQSTWRRRKFVILFQ NYRQATVAIQCSWRQKLARKELRKLKMAANEAGALREAKNKLEKKMDDLALRLTLERRLR ASSEESKSVEILKRDKIIESLSAECAAAKSAAQNEHAKKLLLQKQLDDSLREITMLQSKK IMSAEAAEENSNLKNLVESLSTKNSILENELIVTRKSSDDTMEKLKEVEGKCNHLQQNLD KLQEKLTNLENENHVLRQKAFNMPTMNNLSVAPKTLSEKFSASIGLPNSEPKHIYESPTP TKYLASLPQTLSTSRRSRLPVERHEQNHEILLRCIKENLGYKDGKPVAACIIYKCLLHWR AFESERTAIFDHVIEAINDVLKGNEADGRLPYWLSNTSALLCLLQRNLRSNGLFTTPSRR SGGALGKIAQTLRSPSKFIGRSDTLPHVDARYPAILFKQQLTACVEKIFGQLRDNLKKEI SPLLNVCIQAPKSTRGQSGKASKSSGVGAHPASNSNWDNIVNFLDLLMDTLRENYVPSFF IRKLITQLFSFINIQLFNSLLLRRECCTFSNGEYVKAGLSLLEKWITDVTDEFAGTSWHE LNYIRQAVGFLVIHQKRKKTLEEIKQDLCPSLSVRQIYRICSMYWDDKYGTQGISTEVVA AMREMVNKDTQNLVSNSFLLDDDLSIPFSTEDLSMAIPSIDYADVDLPESLQHYTSVQFL LRQQDPQPAQ

Transcript Sequence

Transcript ID	Zm00001d052110_T051
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:179900099:179926879:-1 gene:Zm00001d052110 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:opaque endosperm1 description: opaque endosperm1
Sequence	AAAGCAAAAATTTCGCGATGAGTCCACCACGACTCCAAGCAGCTGCGGCCGCGCCGCTCT AACCGGAGCTCCGTTAAGACTCCGCCGCCCCAAATCTCAGCGCCTGAGTCCGCCGCTCTC CTCCCGTGCTCGCCGCCACTGGTTTCCGCGCCGGGACTTGGGTTCGGTGGGGCGACGTGG AGCTTAGGGTTTCGGCAGGATGAGCTACCGGAAGGGGTTGAAGGTTTGGGTGGAGGAGAA GGGGGAAGGGTGGGTGGAGGCGGAGGTGGTGGAAGCGAAGGAGCGCGCCGTCGTCGTGTT CTCGAGCCAGCGGAAAAAGCTTGAAAGATTTTTGAGCTGATTGCAGAAGTAGCAAGCTCG GTGTCCTGATGAATATCTGCTACCTTTCCCCCCTCCCTGTCACACCCATTAACATCCTTG CAACTTATGGTTGCTATTAATATTGGATCAATTTTCAGTGAATGTTGAAGCACATTGATT ACAGTTTCACCAGAAAAATTGTTGCCCAGGGATACAGATGAAGATCTGGGTGGGGGTCAT GTGGATGACATGACCAAATTGACATATCTAAATGAACCAGGTGTTCTTTACAATCTGAAG AAAAGATATGCATTGAATGAGATATATACGTACACCGGAAGCATCTTGATTGCCGTTAAT CCTTTTACAAGGCTGCCTCACCTGTACAATGAATACATGATGGAACAATACAAGGGCATC CGATTAGGGGAGCTGAGTCCGCATGTTTTTGCGGTGGCGGATGCATCATACAGGGCTATG GTGAATGATTCTCGAAGCCAATCCATCCTGGTTAGTGGTGAAAGTGGTGCTGGCAAAACC GAAACAACGAAGCTTATTATGCAGTATCTCACCTTTGTTGGCGGTAGAGCCGCTCTTGAT GACCGGACGGTTGAACAACAGGTTCTAGAATCTAACCCTCTTTTGGAGGCATTTGGCAAT GCAAAAACAGTACGCAATGACAATTCAAGTCGATTTGGAAAATTCGTAGAGATACAGTTT GATTCAAGTGGTAGAATATCTGGAGCTGCTATTAGGACCTATCTTTTGGAAAGGTCCCGT GTTGTGCAAATTACTGATCCTGAAAGGAATTTTCATTGCTTCTACCAATTGTGTGCCTCT GGAAAGGACGCAGAGCTGTACAAACTTGGGCATATAAGCAGTTTTCATTACTTGAATCAA AGCAATACACATGATTTGGAAGGGACAAACAATGAAGATGAGTACTGGAAGACAAAAAGG GCAATGGATATTGTTGGGATTAGCAGAGAAGATCAGGACGCTATATTTCGGACATTGGCA GCCATTCTTCATCTTGGCAATATTGAGTTTGTCCCAGGAAAAGATGCTGATTCTTCAAAA ATTAAGGATTCAACCTCAAATTTTCATCTCCAAACAGCAGCTAAATTATTTATGTGTGAT TCAGATCTATTGGTCTCAACGCTATGTAGCCGATCTATACATACTCGTGAAGGAATAATT GTTAAAGCATTGGATTGTGCTGCTGCCGCAGCTAATCGTGATGCTTTAGCGAAGACTGTA TATGCAAGATTATTTGACTGGCTTGTTGAGAATATTAATAAGTCTATTGGTCAAGATGTG GATTCCAAGCTACAAATTGGTGTGCTGGATATCTACGGCTTTGAAAGCTTCAAAAACAAC AGCTTTGAGCAGTTCTGCATTAACTTTGCAAATGAAAAACTTCAGCAACACTTTAATGAG CATGTATTCAAGATGGAACAGGAGGAGTACAAAAGTGAGGAAATTAATTGGAGCTACATT GAGTTCATTGACAATCAGGATGTGCTGGATTTGATTGAAAAGGTTGTTTCTTTACCTTTA TTCATTGGCCTATGCTGAGTGAACTTTGCTGTGTGACCTTGATTTGTTGTATTGAGATCT ATGTTTACATATATAATAATTATTTTGCAATTTGCATCACTTCACATATATTGGCTTGTG CTAGCATTAAATTATCTGCTTGCAAGTTTTTATCAAATTTTGAGCCTCTGTTGCGCGCTT GTCTTGCACCTGCAGTGCTGGGATAGATTGGTGCTCTTCTGCCTTGAGCAAATAACCTTA TGTTGATATTGTGCACATGTGTTAGCTGCCAATGCCGATGTGCCATTTGTGGTGTTCTCC ATGTGGAGTTCTTGTTAATCCACTAATGTTGCCTCATTTTTTCTTGTGCATAGCTGGCAA GTTTTCATATGGCTTGTGCTGTATCCTTGTGCTGTATCCATTTTTGGTACTTTTTTCTCC TGGTTATTTAGTTGTATAGGTTTGAACTGTGTAGGATGTAATAATCATGTAATTGCATGT ATGGACTATATAAATTTTTTGACTTGCGGGGGGTGGGGTAAGACAGCCCTCCGGGTATTG TTTTAAGAAGACTTCATGTAAGTCAAGAAATCCCTTGAACCCCTGTTCCCTCCCATAGTC GAACTCAGGACCTCAAGAGTGCTACTTAGACCATCTAACCAACTTAGAGGTCCTTATGTA AGGATTATGATAGATAAAGTCAGTATCTACCTTTATTTTAAGATCATACAACTGACAACT GTAGGCTTTAGAATAGTCGTTAGTACTCTGGTGTCTGTAACGGGCGCAACATGTTGCTGT TTCCTAAATGCAAGTTTCCGGCATCCTGTTGCCCCAAAACATATAGAAATATATGTTTAC TGTGTCAGGTATTTGAGCGCTAATTTTTTATTTCCGCATGCTGTTAATATTTGCGACATC AGTAGTGTAAGCTGTACTTAGCATGACTACTAAGTCTATTACTTTATTCATTAGGGCATG CTTTCTTTAAGTTTTTTTTTGTTTCATTTGAACACCCTTAGCCATGGCTGGAACTCTGGA GTCTGGGGATAGACCCATGACCTTTTTTACTTTGTCTCACTTGGATGCTCTGGAAAACAT TTTGGCAACTGAAATTGATTGTCTCCGATGTTCTTGAAACAGAAACCAATTGGAATTATT GCACTGCTGGATGAAGCCTGTATGTTTCCCAAATCTACGCATGAGACCTTTGCGACAAAG ATGTTCAGAAACTTCTCTTCCCATCTTAGGCTCGAGAGGACAAAATTCTCAGAAACAGAT TTTACCATCTCACACTATGCTGGGAAGGTCACGTATCAAACAGATTCTTTTCTGGAAAAG AATCGAGATTATATTGTTGCAGAACACTGCAATCTTCTATCATCTTCAAGGTGCCCATTT GTTTCTGGACTTTTCACTTCATTGCCTGAAGAATCTATAAGATCTTCATACAAGTTCTCA TCAGTTGCTTCCAGATTCAAGCTACAATTGCAAGCCCTGATGGAAACCCTAAACTCGACT GAACCTCACTATGTACGCTGTGTGAAGCCCAACTCTGCTAATCGACCTCAGCTTTTTGAA AATCAAAGTGTATTGCATCAACTTCGTTGTGGGGGTGTCTTAGAGGCTGTCCGTATTAGT CTTGCTGGCTATCCTACCAGAAGGACTTATGCTGAATTTGTTGACCGGTTTGCTGTTCTT GTGCCAGAATTGATGATTGGAAGTTACGATGAAAAAATGATGACAAAGGGTATTCTCGAA AAGATGAAGCTTGAAAATTTTCAACTTGGTAAAACAAAGGTGTTCCTTAGGGCTGGTCAA ATTGCGATTTTAGATATGCGCCGTGCTGAGATTTTGGACAACGCTGCACGGCACATTCAA GGCCGTTTCAGAACATTTATCACACGCAAAGAATTTGTGAAAACAAGGGAGGCTTCAATT TCTATACAAGCATACTGCAGAGGCTGTTTGGCAAGGAAGATGTTCGCAAACAGACGAGAA ACAGCAGCAGCTGTAATTGTTCAGAAGTATGTCCGAAGATGGCTGCTACGTAGAGCTCAC CTGCAAGCATGTTTGGCAGCTCTCCTTATTCAGTCTTACATTCGAGGGTTCATCGCTCGC CGCTATTTCTCTGTCATTAGGGAACATAAAGCTGCTACAGTGATACAGTCCACATGGAGA AGACGGAAGTTTGTCATACTTTTCCAGAATTACCGGCAAGCCACTGTGGCAATTCAGTGT TCTTGGAGACAGAAGCTTGCAAGAAAGGAGCTAAGGAAACTCAAAATGGCTGCAAATGAA GCTGGTGCACTGCGTGAGGCAAAGAATAAGCTTGAGAAAAAGATGGATGATCTTGCTTTA AGACTTACCCTTGAAAGGAGACTGCGGGCTTCCAGTGAAGAGTCAAAATCAGTAGAAATA TTGAAGCGTGACAAAATAATTGAATCATTAAGTGCAGAATGTGCTGCCGCTAAGTCAGCT GCTCAAAATGAACATGCCAAAAAATTGCTGCTCCAAAAGCAGTTGGATGATTCTTTGAGA GAGATTACTATGTTGCAGAGTAAAAAGATTATGTCAGCAGAAGCAGCAGAAGAAAACTCC AACCTAAAGAACTTAGTTGAATCATTATCTACGAAGAACTCAATACTGGAGAATGAACTT ATTGTGACTCGCAAAAGTAGTGATGATACAATGGAAAAATTGAAGGAAGTCGAGGGGAAA TGCAACCATCTACAGCAAAACTTGGACAAATTGCAGGAGAAACTTACAAACTTGGAAAAT GAAAATCATGTCTTAAGACAGAAGGCATTTAATATGCCGACAATGAACAATCTGTCTGTA GCTCCAAAGACATTATCTGAGAAATTTTCTGCATCAATTGGGCTTCCCAACAGTGAGCCA AAGCATATATATGAAAGCCCAACACCTACAAAATATCTGGCTTCTCTTCCACAGACTTTG AGTACATCAAGGAGATCGAGGTTGCCTGTTGAAAGGCATGAGCAAAATCATGAAATTTTA TTGAGATGCATCAAAGAAAATTTAGGATATAAGGATGGCAAACCAGTTGCAGCATGTATC ATTTACAAATGTCTTTTGCACTGGCGTGCTTTTGAATCAGAGCGAACTGCTATTTTTGAT CACGTGATTGAGGCCATAAATGATGTCCTAAAGGGGAACGAAGCTGATGGTAGATTACCT TATTGGTTGTCCAATACCTCTGCATTGCTATGCCTTCTCCAAAGAAATCTGCGGTCAAAT GGATTATTCACTACCCCGTCTCGTCGTTCTGGTGGAGCTCTAGGGAAGATAGCACAAACA TTGAGGTCTCCTTCAAAGTTTATAGGCCGCAGTGATACTCTACCACATGTTGATGCACGG TATCCAGCCATACTATTCAAACAGCAGCTTACTGCATGTGTCGAAAAGATATTTGGGCAG CTCAGAGATAATCTAAAAAAGGAAATATCACCTCTTCTTAATGTTTGCATTCAGGCTCCA AAGTCAACACGTGGGCAATCTGGAAAAGCATCCAAGTCATCTGGAGTTGGTGCCCACCCA GCATCGAACTCCAACTGGGACAATATCGTCAATTTCCTTGACTTACTTATGGATACATTG CGCGAAAATTATGTGCCATCCTTCTTTATACGTAAACTTATCACACAATTATTCTCCTTC ATCAATATACAGTTGTTTAACAGTCTTCTTCTCCGACGTGAATGTTGTACATTCTCCAAT GGGGAATACGTGAAAGCTGGGCTATCGTTGTTGGAGAAATGGATTACTGATGTCACAGAT GAGTTTGCGGGTACATCTTGGCACGAGCTCAATTATATCAGACAAGCTGTTGGATTTTTG GTTATACACCAAAAAAGAAAAAAGACGCTTGAGGAGATCAAGCAAGATCTTTGCCCGTCC TTGAGTGTTCGCCAAATCTATAGAATATGCTCGATGTATTGGGATGACAAATACGGTACC CAAGGCATTTCAACCGAGGTGGTTGCTGCAATGCGGGAGATGGTCAACAAAGATACCCAG AATCTTGTGTCAAATTCCTTCTTGTTGGATGATGACTTAAGTATACCATTCTCTACCGAG GATCTATCAATGGCAATCCCGTCAATAGATTATGCTGACGTCGATCTTCCAGAATCTCTT CAGCACTATACATCAGTACAGTTTCTACTAAGGCAGCAGGATCCACAGCCTGCCCAATAG AATGAATGTGGTCAGCCTGCCCTGAAGATCTGTCTGTCCCCTGGTTGTTTCTACCAAGGC AGCAGGATCCACAGCCTGCGGCCTGCCCAATAGAATGGATGTGGTCAGCCTGCCCTGAAG ATCTGTCTGTCCCCTGGTTTTATTGGGGTAACATCCATCTGCGATGTTGTATTGATGTTT AGAGAGTACCTAGTTTGGTGGAGTGGACACAATTTAAAAGCAACCATTGTTGCTAGATGC CAATTCATTGGTGTTCACTCCCCAAGTATTTTTCATTGTACAGGAAATGTTGTAAGTCTG TTGACTAGCGCAAAATTAGTTATATCAGT