Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d052033_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:4:176969204:176972630:1 gene:Zm00001d052033 gene_biotype:protein_coding transcript_biotype:protein_coding description:OSJNBb0045P24.5 protein
Sequence

ATGTTTGACGTGTGGAGTGTCGTGGGATGGTGGGACAGGTGGCAGCTGCGCGTCCTCGTC
CTCGGCAGCCTCGGCATCCAGTGGTTTCTGCTGGTGGCTGCCCCCATGCGCAAGTACACC
ATCCGCCCCGGCCTCAGGCTATGCATCTGGCTTGCCTACATCAGCAGCGACGCTCTGGCC
ATCTACGCGCTCGCCACCCTCTTCAACCGCCACGCCAGGGCGACCAGCAGCAGCAGTTGT
GACGGCGGTGCCAACAGCAAGGCGAGGATCCTGGAGGTCCTCTGGGCTCCTGTCCTGCTC
ATCCATCTCGGCGGGCAGGAGGAGCTGACCGCCTACACCATCGAAGACAACGAGCTGTGG
ACACGGCACACCGTGACCCTCGTGTCCCAGGTCGCGGTTGCCCTCTACGCCTTCTACAAG
TCCTGGCCCAACCCCAGCGACTGGAAGCTGCTGGCGTCCGCGATCCTGCTCTTCATCATC
GGGGTCGTCAGCTTCAGCGAGAAGCCATGGGCGCTCAAGAAAGCCAGCATCAACAGGCTG
GCGTCTGTGTCGGCCACGATACAGGGGACCAAGAAGCGCACGAGGCTGGCGGTGTACTTG
GACGATCTTCTCTTCTCCGATTGGTACAGCTGCTCCAGAGCCACCGAGAAGAGTAGCAGC
AGCGGTAGTAGCCTCCCCGCAGCCGCAGCCGCGGCAGGTGTGGGTTGGCACGACTGCTTC
TCCTTCACCGAGCCGAGCAATAAGGGGCACGGCGATCATGTGGGCTTGTCGGAGGCAGAT
AAAGTCTACATGGTGCTCTCGGACATGTCGCTGTCCGCGGCCGCCGACGACCTTGTGCTG
CGAGGCAGGGCTCGAAATGTGGAGGATGTTCTTCGGCCCCTGAGCACCAAGGCGGAGCAG
GCACTCAAGCGCTGGCTGCGTGGCGCGTTTGGGCTCATATACACCAGAGCCAACCTGGTC
TTCACTCGCACGTACCTGGTGTACCATGTGCTGGTGGTGCCGATCCTGCACGTCGCCGCC
CTCACGCTGTTCGCGACGAGCGACAAGCACGGGTACGACCGCACCGACGTGAAGATCACG
TACGTCCTCCTGTGCCTCACCGCCGCGCTGGACGTCCTTGCGGTGTTCGTCCGCCAGCTG
CTGTACGGGGCCATGTCCGCCAAAGGTGTCCCGGCGCTGTGCGAGACGGTGCCAGGCTAC
AACCTCGTGGACGCGGTCACCCGGCGGAGGCAGAAGGACATTGGGTGGCTGTTCAGGTGC
GCCGCCGCCATGGGCTGCAAGGAGGAGTACTTGGAGTACTGCAAGTGCGGCGGGGGGCAG
CAGCACTACACACTGTACAAGAATGTGTCGAAGATGGTCCTTGCGGATCTGGTGGACGCA
CAGGGCCGCGACCTCGCCAACTACAGAGTCTTCACGGTGCCCTACGCATCACCTGCAAGC
ACTGCTGCCGGGCCGGCCGTGGAGCAGCAGCGCGCATCGCCAGCAGGCGCGGCCAACTGG
GCTCTCAGCGAGGAGCAGCAGAAGCTGTGCGGCCGCAAGGTCCGGGACACCCTGCGTGGG
TCCTTCGACAGGAGCGTCCTCGTCTGGCACATCGCCACCGACCTCTGCTTCCGCATGGAA
CAAGTTCCTCCTGACGCCGACAAGGAAGAAGACTCGCACTGGCTCCGCATCAAGTGCACG
GAAGCGATATCCTGCTACATGGCTCGCCTGCTCGACTCCCACCCCGACATGCTGCTCACC
GGCAGCAGGCGGCACCTGGTCAGCGAAGCCTTGGATGAACTCGAGTCCATCTTTGACCGC
ACCATGGTAGATCGCAGCGGCAAGCCACCGGGCAAAGACGACCTGCACAAGATCATCGAC
GACGTGGCGCGGGTACGTTTCCAGGTGCCCGTCGGCGTCGCTCATGGAGCTGCAGACGAC
GACGGGGAGGAGGCGGTACAGTCTTTCTTCCACATCCCCGAGGCATGCGGGCTTGCAATG
GAGCTGCTGCAGCTTGAAGCGTCCACGCGCTGGAGGGTGATGTATCGGGTGTGGCTGGGC
ATGCTCTTCTACTCCGCCAGCATGTGCAGGGGCTACCTGCACGCTAAGAGCTTGGGTGAA
GGACACTATCTCTAA

Peptide Sequence

PEP ID

Zm00001d052033_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:4:176969204:176972630:1 gene:Zm00001d052033 transcript:Zm00001d052033_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:OSJNBb0045P24.5 protein
Sequence

MFDVWSVVGWWDRWQLRVLVLGSLGIQWFLLVAAPMRKYTIRPGLRLCIWLAYISSDALA
IYALATLFNRHARATSSSSCDGGANSKARILEVLWAPVLLIHLGGQEELTAYTIEDNELW
TRHTVTLVSQVAVALYAFYKSWPNPSDWKLLASAILLFIIGVVSFSEKPWALKKASINRL
ASVSATIQGTKKRTRLAVYLDDLLFSDWYSCSRATEKSSSSGSSLPAAAAAAGVGWHDCF
SFTEPSNKGHGDHVGLSEADKVYMVLSDMSLSAAADDLVLRGRARNVEDVLRPLSTKAEQ
ALKRWLRGAFGLIYTRANLVFTRTYLVYHVLVVPILHVAALTLFATSDKHGYDRTDVKIT
YVLLCLTAALDVLAVFVRQLLYGAMSAKGVPALCETVPGYNLVDAVTRRRQKDIGWLFRC
AAAMGCKEEYLEYCKCGGGQQHYTLYKNVSKMVLADLVDAQGRDLANYRVFTVPYASPAS
TAAGPAVEQQRASPAGAANWALSEEQQKLCGRKVRDTLRGSFDRSVLVWHIATDLCFRME
QVPPDADKEEDSHWLRIKCTEAISCYMARLLDSHPDMLLTGSRRHLVSEALDELESIFDR
TMVDRSGKPPGKDDLHKIIDDVARVRFQVPVGVAHGAADDDGEEAVQSFFHIPEACGLAM
ELLQLEASTRWRVMYRVWLGMLFYSASMCRGYLHAKSLGEGHYL

Transcript Sequence

Transcript ID

Zm00001d052033_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:4:176969204:176972630:1 gene:Zm00001d052033 gene_biotype:protein_coding transcript_biotype:protein_coding description:OSJNBb0045P24.5 protein
Sequence

ATGTTTGACGTGTGGAGTGTCGTGGGATGGTGGGACAGGTGGCAGCTGCGCGTCCTCGTC
CTCGGCAGCCTCGGCATCCAGTGGTTTCTGCTGGTGGCTGCCCCCATGCGCAAGTACACC
ATCCGCCCCGGCCTCAGGCTATGCATCTGGCTTGCCTACATCAGCAGCGACGCTCTGGCC
ATCTACGCGCTCGCCACCCTCTTCAACCGCCACGCCAGGGCGACCAGCAGCAGCAGTTGT
GACGGCGGTGCCAACAGCAAGGCGAGGATCCTGGAGGTCCTCTGGGCTCCTGTCCTGCTC
ATCCATCTCGGCGGGCAGGAGGAGCTGACCGCCTACACCATCGAAGACAACGAGCTGTGG
ACACGGCACACCGTGACCCTCGTGTCCCAGGTCGCGGTTGCCCTCTACGCCTTCTACAAG
TCCTGGCCCAACCCCAGCGACTGGAAGCTGCTGGCGTCCGCGATCCTGCTCTTCATCATC
GGGGTCGTCAGCTTCAGCGAGAAGCCATGGGCGCTCAAGAAAGCCAGCATCAACAGGCTG
GCGTCTGTGTCGGCCACGATACAGGGGACCAAGAAGCGCACGAGGCTGGCGGTGTACTTG
GACGATCTTCTCTTCTCCGATTGGTACAGCTGCTCCAGAGCCACCGAGAAGAGTAGCAGC
AGCGGTAGTAGCCTCCCCGCAGCCGCAGCCGCGGCAGGTGTGGGTTGGCACGACTGCTTC
TCCTTCACCGAGCCGAGCAATAAGGGGCACGGCGATCATGTGGGCTTGTCGGAGGCAGAT
AAAGTCTACATGGTGCTCTCGGACATGTCGCTGTCCGCGGCCGCCGACGACCTTGTGCTG
CGAGGCAGGGCTCGAAATGTGGAGGATGTTCTTCGGCCCCTGAGCACCAAGGCGGAGCAG
GCACTCAAGCGCTGGCTGCGTGGCGCGTTTGGGCTCATATACACCAGAGCCAACCTGGTC
TTCACTCGCACGTACCTGGTGTACCATGTGCTGGTGGTGCCGATCCTGCACGTCGCCGCC
CTCACGCTGTTCGCGACGAGCGACAAGCACGGGTACGACCGCACCGACGTGAAGATCACG
TACGTCCTCCTGTGCCTCACCGCCGCGCTGGACGTCCTTGCGGTGTTCGTCCGCCAGCTG
CTGTACGGGGCCATGTCCGCCAAAGGTGTCCCGGCGCTGTGCGAGACGGTGCCAGGCTAC
AACCTCGTGGACGCGGTCACCCGGCGGAGGCAGAAGGACATTGGGTGGCTGTTCAGGTGC
GCCGCCGCCATGGGCTGCAAGGAGGAGTACTTGGAGTACTGCAAGTGCGGCGGGGGGCAG
CAGCACTACACACTGTACAAGAATGTGTCGAAGATGGTCCTTGCGGATCTGGTGGACGCA
CAGGGCCGCGACCTCGCCAACTACAGAGTCTTCACGGTGCCCTACGCATCACCTGCAAGC
ACTGCTGCCGGGCCGGCCGTGGAGCAGCAGCGCGCATCGCCAGCAGGCGCGGCCAACTGG
GCTCTCAGCGAGGAGCAGCAGAAGCTGTGCGGCCGCAAGGTCCGGGACACCCTGCGTGGG
TCCTTCGACAGGAGCGTCCTCGTCTGGCACATCGCCACCGACCTCTGCTTCCGCATGGAA
CAAGTTCCTCCTGACGCCGACAAGGAAGAAGACTCGCACTGGCTCCGCATCAAGTGCACG
GAAGCGATATCCTGCTACATGGCTCGCCTGCTCGACTCCCACCCCGACATGCTGCTCACC
GGCAGCAGGCGGCACCTGGTCAGCGAAGCCTTGGATGAACTCGAGTCCATCTTTGACCGC
ACCATGGTAGATCGCAGCGGCAAGCCACCGGGCAAAGACGACCTGCACAAGATCATCGAC
GACGTGGCGCGGGTACGTTTCCAGGTGCCCGTCGGCGTCGCTCATGGAGCTGCAGACGAC
GACGGGGAGGAGGCGGTACAGTCTTTCTTCCACATCCCCGAGGCATGCGGGCTTGCAATG
GAGCTGCTGCAGCTTGAAGCGTCCACGCGCTGGAGGGTGATGTATCGGGTGTGGCTGGGC
ATGCTCTTCTACTCCGCCAGCATGTGCAGGGGCTACCTGCACGCTAAGAGCTTGGGTGAA
GGACACTATCTCTAA