Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d052030_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:4:176898108:176900484:1 gene:Zm00001d052030 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGGCCGCTGCCGCGCGCTCGCGCCTCGCCGGCCTCCGCCTCGACCTCGCCTCCCGCACG GCACCAAACCCTAAGCCCCTCCTCTCCTCCGCCTTCTCCTCCTCGACCATCTCCGCGCCT CCCGCGGCCGGCCGGGTCCGCGAGGACGAGAGTGGCCTCCTCTCGCGGCGCCTGCTCCGG CTCCGCTTCCGCTCGCCGGCCGGGACCGCCGCGGCTGCCGTCGAGAGATGGGCCCAGGAC CGCGTCCACGTCTCGCAGCCGGAGCTTCGGCGCGCAATCGGGATGCTCCGGCGCGAACGT CGCTACGAGCAGGCCCTCGAGATTTTCTCTTGGATGGAATCATGCAGCTCCCTTCGACTG TCGTCATGGGATCATGCAGCAAGACTGGACTTGATTGCTAAAGCTTACAGTACTTCTCAA GCCGAGGAATACTACAACAAACTACAGAGCCCTGCTACCAGACAAGCAGCATCGTTCCCT CTCCTCCATTGCTATGTTATGGAAAGAGATGTACAGAAGGCTGAAACCTTCATGGCTCAG TTGCAGAGTCATGGGTTGCCCGTTGATCCTCACTCTTTCAATGAAATCATGAAGCTCTAT GTTGCAACCTGTCAGTATGAGAAGGTCCTTAGTGTAATTGACCTCATGAAACGGAACAAC ATTCACAGAAATGTTCTCTCCTACAACCTTTGGATGAATGCTTGTGCTGAAGTCTCTGGT GTTGACTCGGTACAATCAGTGTTCCAGGTGATGTTGAATGATGAGACGGTCAAGGTTGGT TGGAGCACATACTGCACATTAGCCAACATTTTCAGGAAGAATGGACTGAACAATGAAGCG CAAGCGTGCCTTGTGAAAGCTGAAGCAAAATTGTCACCTGCAGGGCGCTTAGGATACTCT TTTGTAATGACATGTTATGCGGCTCTGAATGACAGCGATGGAGTTATGAGAATGTGGGAG GCTAGCAAAAGTGTGCCAGGTAGAATTCCCACTGCATACTACATGGCTGCTATGTCATGT TCAATAAAAGTTGGCGACATCAGCCAGGCCGAGTGTATCTTTGGAAAGTGGGAAGCAGGG TGCAGGAAGCATGATGTGAGGGTTTCAAATGTTCTTCTTGGTGCTTATGTGAGGAATAGG TGGATTGAAAAGGCTGAGAGGCTCCACCTCCACATGCTAGAGAAAGGAGCGTGTCCAAAT TACAAGACATGGGAGATATTGATGGAGGGCTATGTTCAAAGCAGGCAAATGGACAAAGCT GTGGGTTGCATGAAGAAAGGTTTGTCTCTGTTGAAGAGTTGCCATTGGAGACCTCCAGTT GAACTGATGGAGGCCATTGGCAAACATTTCGAGGAGCAAGGAAGTGCTGACGATGCATAT CGATATATTAAGGTTCTCCAGAGATTTAACTTGACAAGCTTGCCCCTGTACAAGTCATTG ATTCGAGCATATATCAATGCTGACGTTGTGCCACCAAATGTCCTTGAGATGATTGCAAAA GATCAGATTGATATGGATGAAGAAATGGACCGGTTGATCATAATCGCTGGCAAGATAGAC ATCACATGCAATGGATAG

Peptide Sequence

PEP ID	Zm00001d052030_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:4:176898108:176900484:1 gene:Zm00001d052030 transcript:Zm00001d052030_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	MAAAARSRLAGLRLDLASRTAPNPKPLLSSAFSSSTISAPPAAGRVREDESGLLSRRLLR LRFRSPAGTAAAAVERWAQDRVHVSQPELRRAIGMLRRERRYEQALEIFSWMESCSSLRL SSWDHAARLDLIAKAYSTSQAEEYYNKLQSPATRQAASFPLLHCYVMERDVQKAETFMAQ LQSHGLPVDPHSFNEIMKLYVATCQYEKVLSVIDLMKRNNIHRNVLSYNLWMNACAEVSG VDSVQSVFQVMLNDETVKVGWSTYCTLANIFRKNGLNNEAQACLVKAEAKLSPAGRLGYS FVMTCYAALNDSDGVMRMWEASKSVPGRIPTAYYMAAMSCSIKVGDISQAECIFGKWEAG CRKHDVRVSNVLLGAYVRNRWIEKAERLHLHMLEKGACPNYKTWEILMEGYVQSRQMDKA VGCMKKGLSLLKSCHWRPPVELMEAIGKHFEEQGSADDAYRYIKVLQRFNLTSLPLYKSL IRAYINADVVPPNVLEMIAKDQIDMDEEMDRLIIIAGKIDITCNG

Transcript Sequence

Transcript ID	Zm00001d052030_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:4:176898108:176900484:1 gene:Zm00001d052030 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	CAACGACAAACCAGGCCCACGTGCGATGGCCGCTGCCGCGCGCTCGCGCCTCGCCGGCCT CCGCCTCGACCTCGCCTCCCGCACGGCACCAAACCCTAAGCCCCTCCTCTCCTCCGCCTT CTCCTCCTCGACCATCTCCGCGCCTCCCGCGGCCGGCCGGGTCCGCGAGGACGAGAGTGG CCTCCTCTCGCGGCGCCTGCTCCGGCTCCGCTTCCGCTCGCCGGCCGGGACCGCCGCGGC TGCCGTCGAGAGATGGGCCCAGGACCGCGTCCACGTCTCGCAGCCGGAGCTTCGGCGCGC AATCGGGATGCTCCGGCGCGAACGTCGCTACGAGCAGGCCCTCGAGATTTTCTCTTGGAT GGAATCATGCAGCTCCCTTCGACTGTCGTCATGGGATCATGCAGCAAGACTGGACTTGAT TGCTAAAGCTTACAGTACTTCTCAAGCCGAGGAATACTACAACAAACTACAGAGCCCTGC TACCAGACAAGCAGCATCGTTCCCTCTCCTCCATTGCTATGTTATGGAAAGAGATGTACA GAAGGCTGAAACCTTCATGGCTCAGTTGCAGAGTCATGGGTTGCCCGTTGATCCTCACTC TTTCAATGAAATCATGAAGCTCTATGTTGCAACCTGTCAGTATGAGAAGGTCCTTAGTGT AATTGACCTCATGAAACGGAACAACATTCACAGAAATGTTCTCTCCTACAACCTTTGGAT GAATGCTTGTGCTGAAGTCTCTGGTGTTGACTCGGTACAATCAGTGTTCCAGGTGATGTT GAATGATGAGACGGTCAAGGTTGGTTGGAGCACATACTGCACATTAGCCAACATTTTCAG GAAGAATGGACTGAACAATGAAGCGCAAGCGTGCCTTGTGAAAGCTGAAGCAAAATTGTC ACCTGCAGGGCGCTTAGGATACTCTTTTGTAATGACATGTTATGCGGCTCTGAATGACAG CGATGGAGTTATGAGAATGTGGGAGGCTAGCAAAAGTGTGCCAGGTAGAATTCCCACTGC ATACTACATGGCTGCTATGTCATGTTCAATAAAAGTTGGCGACATCAGCCAGGCCGAGTG TATCTTTGGAAAGTGGGAAGCAGGGTGCAGGAAGCATGATGTGAGGGTTTCAAATGTTCT TCTTGGTGCTTATGTGAGGAATAGGTGGATTGAAAAGGCTGAGAGGCTCCACCTCCACAT GCTAGAGAAAGGAGCGTGTCCAAATTACAAGACATGGGAGATATTGATGGAGGGCTATGT TCAAAGCAGGCAAATGGACAAAGCTGTGGGTTGCATGAAGAAAGGTTTGTCTCTGTTGAA GAGTTGCCATTGGAGACCTCCAGTTGAACTGATGGAGGCCATTGGCAAACATTTCGAGGA GCAAGGAAGTGCTGACGATGCATATCGATATATTAAGGTTCTCCAGAGATTTAACTTGAC AAGCTTGCCCCTGTACAAGTCATTGATTCGAGCATATATCAATGCTGACGTTGTGCCACC AAATGTCCTTGAGATGATTGCAAAAGATCAGATTGATATGGATGAAGAAATGGACCGGTT GATCATAATCGCTGGCAAGATAGACATCACATGCAATGGATAGTCTTCAACTGGAACAGG TAATCACCAGTCAAATGATAAATATACTCATTTGACTTTGTCAATTAGAGATGCAAAGTG AAGCAACAAGTTGAACCTGCAAATTACTAGATGCAAAAAAGGCACTCCTGGATACCTTGT TTGGTGTTCATGCAGTCCTGCTAATATGAACAACTCCATCTTCTTGTGAATCTTAAGTAT ATTTGGAAAATGTGGAAAACACGAAAACCTGAACCAGCACAAGAATGCTTACAACTTCTC AAGGATCACCTGAACCTTTGGACTATCAGAACTTCATCGAACCTGAATCAACATTCCCCG GTCATCACCTGTAATTAGTGGCGTAACCATTCTTATGATGCAAGCACATAGCTTGCTTAT TTGTTCCTTAAATCATCACTATTCACGAAAAGCTGGTTTGCAGCCACTAACATCTCTTAT GAATTGTTCTTGGAGAATTAATCACTGATCAGCCCCAAAATACTTGCTTCGGCAGTGGTT TTGAACACAGTGAACTGCCAATTTTGGTTTCATTCTCAGAATTTCAG